Array 1 133210-131168 **** Predicted by CRISPRDetect 2.4 *** >NC_015865.1 Thermococcus sp. 4557, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 133209 29 100.0 37 ............................. GCGAACTACATCGAGAACATAAGCGAGGACTACGAGA 133143 29 100.0 41 ............................. TGTAATTCCTCAGGCGGCGGCCGATGACCTCAGGGAAGTAG 133073 29 100.0 38 ............................. ATTATCCCTTAGACCAAAATAAACTTCATTGTTGTCAT 133006 29 100.0 37 ............................. TTGGCCTTCTTCACATTCAGGTGCTTCTCAAAGTTCT 132940 29 100.0 38 ............................. AGGACCGCCGCCCTATACTCTCCGCAAAAACACACCGG 132873 29 100.0 42 ............................. AGGACCTCCTTCTTCTTTTCCTCGTCGTCCGATGCAGCCAAT 132802 29 100.0 36 ............................. ACAACCTCATTCACCTATCCTCACCTCCCATCTTTT 132737 29 100.0 36 ............................. TAACTTCCCAGAACCGCCCGAACCGTGGGAGGAGTA 132672 29 100.0 38 ............................. GGAAGTCGTCTAGTGCCTCCAAATGCTCAACTTTCTCT 132605 29 100.0 39 ............................. CCGTCCTCGAAATCGGCGTAACCTCCTCGGTAGTGAACA 132537 29 100.0 36 ............................. CGCCGTGTTCCCTCATGCTCACGACGACGGCCGCGG 132472 29 100.0 36 ............................. CGCCGTGTTCCCTCATGCTCACGACGACGGCCGCGG 132407 29 100.0 37 ............................. AAGTGGTTGCTAATCGTCCGCAAGCTCGCCCATAAGC 132341 29 100.0 43 ............................. AGGGTGATTGGGTGGTCCGGGTCGGCGTTATCGCTTTCCTGAA 132269 29 100.0 38 ............................. AGCTCCTCAAGCGTGCGCCTAATCGCCTCTTCTCTGTT 132202 29 100.0 36 ............................. ACTCCGTCCACTCTGAGGACCCTTCAGTTATCCCAG 132137 29 100.0 35 ............................. TGCCCGGAGCGTATGTCGACTTGTGGGTGACAAGG 132073 29 100.0 36 ............................. TACCACCCCCGAAGTTTTGTCGTTAGAACTATGTTC 132008 29 100.0 37 ............................. CCAGGCTCATGTGGTCCATCAGTAGCGAGGCCACCGG 131942 29 100.0 38 ............................. TCAAGGTGGCTGAAGAGTTAGGCGACCTTTTGCAAATC 131875 29 100.0 40 ............................. ATCTCCACCACTATGTACACCGGTTCCGGCGTCGGTTCCC 131806 29 100.0 40 ............................. AAAACTTTTCTCCCCCTGCGCCCACAGCCTGCATGTTTTG 131737 29 100.0 38 ............................. AGGTTCGAGAGTTCGGAAATGGGTTATTCCAACGTCTT 131670 29 100.0 42 ............................. GAGGAGGTCGGGAGCCAATGAGCGAGGAGAAACCGCTTTTTG 131599 29 100.0 39 ............................. AGGTTGGCGAAAAGGGCCTTTGCCTCGTCGTTGGTCGGG 131531 29 100.0 36 ............................. TGGAACGTATGACATGGGGATAACCTCGGACCCTCT 131466 29 100.0 38 ............................. AGGAGTTTGAGGAGAAGGAAAGGCTCGCGGTCCTCGAA 131399 29 100.0 41 ............................. AATAACCTGCCATACAACCGTGCTTGTGGGTCAGAGGAATA 131329 29 100.0 37 ............................. CAGAGACCCCCGCACCCACGACTGCTTTTGGTATGAC 131263 29 100.0 38 ............................. CTATGGGTAACCGACGACGCCCAAACCGGCTTTTGTAG 131196 29 86.2 0 .......................CC..TA | ========== ====== ====== ====== ============================= =========================================== ================== 31 29 99.6 38 GTTTCCGTAGGACAGAATTGTGTGGAAAG # Left flank : GTGCTACTCTTTGATGGAGAACCTGTGTTCGCTCTTTGATTTTTTCAGTTTTACCTTTGTCGCGTCTATTTTGTTATATAAATCGACCATACCAGAGAACTAATGGTAAGAAGGCAAAAACGGGTTTTTCAAATGTGGGGTGTGGGGGGCTTCTGCGGGTGTCCGCTGGATTGGGGAGAATGGGAATACTGCTATCTATCCCCCAGTTTTTAAAACAACGCTAGGACGGGAGAGGTTGAACCCTCAACCGCACATTGGAGGGCGGTATCACGTTATTAAACGCCAAAGGGGAATAGTTTAACCCTCAGACCAGTTTCGATTACACCAATTGCAATATAAGGACAGTATGAGGCTTCAATGGCCAAGATACTGGATCACATGCCGTTTTAGTTTGTGTATCAGGTTTATAAACAGCCAGCGATGTTACGGATTCTCGGAGAAAACATTAAATAGAGAGTCTCAGGATAGTTTATTGTACAATACAAGGAGAAAAAGAGAAA # Right flank : AGAAGCTTAAGCAAAACCCCGGTTGGTGGTTTCATGAAACGGCCGGTGTATATCACCCAGATGGGGATACTCGAAAGGAGGGGCAATACTCTATTCTTCGAGAACGAGAACGGCAAGAAAGCCATCCCCATAAACTCCACCAGCGAAATACACTGTTTCAAACCCGTGACTTTAACGAGCGGGGCTATAAAACTTCTCTCAGAGAAAAATGTCCCTGCCCACTTCTACAACAAGTACGGCTATTATAGGGGTTCGTATATGCCGATTGAGGGGCAGATAAGTGGAACGGTCGTAATAAAACAGGCCGAGCACTACCTCGACCCGGAAAAGCGCATCTACATAGCCTCTCAGTTCCTGGGGGGGATAAAAGCCTCGATGGTGGCTTTTCTGAAATCACAGAGGGCGGATTATGGCACCATCTCGGAAATCGAGGTTAAGGGTGAAACGCCCACCGAGCTGATGGGGGTCGAGAGCCAGTTGTGGAGGGAGTTCTACGGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 140106-137547 **** Predicted by CRISPRDetect 2.4 *** >NC_015865.1 Thermococcus sp. 4557, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 140105 29 100.0 36 ............................. CGGGGTCCCTCTCCATGCTCGCGGGTCCTTCATCGA 140040 29 100.0 39 ............................. AAATCCAAACTCCGAGCGGACCCCTCGACTTATGTATGT 139972 29 100.0 36 ............................. TGATAGCGGAGACGTCGGCCTGAGTAACGGTAAGCT 139907 29 100.0 39 ............................. AAGCATACTTCGTCGACCCAGCCTTTGAGCAGTTATTTG 139839 29 100.0 38 ............................. CACGGGGACGCCATCTTTTCACCACCCGGAGTGAACGG 139772 29 100.0 36 ............................. TAAAGGTCCTTCCGTGTGATGCTACCGCCGGCCCGA 139707 29 100.0 39 ............................. TACGCGCGCCCTCAGCGATTCAGAAATCGCCCAAATCTA 139639 29 100.0 40 ............................. ACCGCACGCTTTGCAGATGGCCTCTATCGTCTTGTCGAGG 139570 29 100.0 41 ............................. AGCGGAACACATATTGATAATGAGTTGCCTCATCAACTACC 139500 29 100.0 37 ............................. AAAAAGTACCCTTCCTTTATCTTTTCATCAATAAGAA 139434 29 100.0 36 ............................. CCCATCCTCTGCGTTCACTTCCGCGTACACGTCTTT 139369 29 100.0 37 ............................. ACGAACTCGGCCGCGAGGGTCCTCGGGTCCTCGGTCC 139303 29 100.0 37 ............................. ACCACATCATCCACCCTCTCCCAGGGCACATGATAAT 139237 29 100.0 39 ............................. AACATAATTTTCATTTAGACCCTCGCGAACTTCCGCAAG 139169 29 100.0 37 ............................. TGACCGGTATCGGGAAGGGCTGAGGAACGCCCTCATA 139103 29 100.0 35 ............................. TAATGAATACCGCCGTATTCATCACGAACACCCAC 139039 29 100.0 39 ............................. ATGTCCCCCACCTTGTAGCGCTTCTTGACCGGGCGGCCT 138971 29 100.0 41 ............................. ACTCCTCCCGGCGCTGATGGCTCGAGCAGGGGGCTGCTTTT 138901 29 100.0 36 ............................. TTCGCCTTGTCGTCAGGAACGCCAGCAGGTCAAGAA 138836 29 100.0 36 ............................. TCCATCTGACTGGGTGTGGGTTTAGCGGGCGCGTCA 138771 29 100.0 37 ............................. GACGGCCGCCTCGCCGGGTGGACTTCCATCACATCGA 138705 29 100.0 37 ............................. GCGGGTGGGGTGCATCTAACGGAAGCATTACGACGTT 138639 29 100.0 37 ............................. TGTAAACATCGAGCTTATAACCGGCCGGCTCCTTTCC 138573 29 100.0 38 ............................. TTTTTGCAATTGCATTCCACACAGCGGCCCGTATCTCT 138506 29 100.0 38 ............................. TCGTAGCATTATACAATAATTACAGCCGGATAAGGGCG 138439 29 100.0 35 ............................. TCCTAACTGAGGCCCTCGGCCTAACTGATACTATG 138375 29 100.0 37 ............................. TTGGACTACCTGCAAACCCCGTCTGATGCCCTACCAT 138309 29 100.0 40 ............................. TCAAAGCTCACGTATGAGTAATTGGAGTACGCTGCATCGA 138240 29 100.0 36 ............................. CAGGTTTCCTTAGCCTCTTCCACATGGCGCAGGGCG 138175 29 100.0 37 ............................. ACGCGCTCGCCGTCGAGCTTCTCAACGTCGCAGTAGT 138109 29 100.0 35 ............................. AGCGTCTCGGTGAGGATTTTCCCCGGCCCTATCCT 138045 29 100.0 43 ............................. TGATTCTAAGGAGGATTGAGGAATGACGCGCTGGGCTCAGCTC 137973 29 100.0 35 ............................. CATGACCCGATGGAACGCGCCCTTTGCATGCTCTA 137909 29 100.0 37 ............................. GCAGGAGGCCAGCGGTGCTTTACTCGGGTGGAAAGGA 137843 29 100.0 37 ............................. ACGCCTTCCCTCGCAAGAAGGAGTACACGGTGAAGGA 137777 29 100.0 38 ............................. CTCGCCCCTACGTTCGCGTTGACAACTCCAAAGTTCTC 137710 29 100.0 39 ............................. GATACTCGTCCGAGAGGAACAGGATGAGCGTTTCGAGGC 137642 29 100.0 38 ............................. AGTAAAACTTAGTAATTGGGGGCCTGGCACATGGTGAG 137575 29 86.2 0 ..............A.A.....C.A.... | ========== ====== ====== ====== ============================= =========================================== ================== 39 29 99.6 38 GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Left flank : GTGATACACAGGGTGTCTTTCGGGGTCATGTACTTCTTATCCAGCCTAAACACTATTGGTCTGGCTTTATTCCGGCTGCAAGATGATATCATGGGGCCATCACAATTTCTGGTTCCCTCCAGCCGTCTTTGTCTCCGGTTCACCCTACTGGTAGTAACTGTCCCCTGGATGTATCCATTTTGCAGAGATGCCCCCAGGGGCACCTGCGGGGCTAAATCTCCGATGACACCACAGTTTGAACGGTTGAATGGCCCCAGTTGCAGGGGAATTTATTTTTCCGGAGATTTCAAGACCCGGATTTTCTCAAAGAGGTTTTCGATCGCAGGATTCGGGATTTTAAGCACTATAAGGTTCCAAACAATGAGTCCTGACAACCACGTAATTTCTCCGTTTCCGGGGCAGGATTTTAAATGAAACACAGTGCCACAGGTTCCCCAAGAAAGGCTTAAATACACATTCTATGATGGGAATATTTGAGAAAATAAAAGAAATCAGAGAGA # Right flank : GAAACCCTCCACATAATTACCCCCTATGGTTCTACACACCTACAGTGCAGAGTGAGATTCAATGACTCACGGTGCATAGACAAGTTTATAAGTAGGACGTTTAAATTCACATCTGCACTTACAATGAGCATCAGGTGCATATTATGAGGCTCAAAGTGTCCTTTAGGGCACCCTCTGATACCGGCCCCCTCCGCCCCAACAAGCACGCGGTGCAGGGCTTCATATACAACATGCTGAAAGGTACTGAGTACGGCGCCAGACACGATCAGCCCCGTTTCAAGTTCTTCACGTTCTCTGACTTCTTCAAGGAGAACTCCAGATGGACGTTCCTTGTATCATCACCCGATAGAGACTTCATAAGGGCCCTGTACTCGGCGATCAAGGAGAAGGACAGACTGTACATCGGCACCCACGAGCTTTATCTGGCCGAACTCAGGAAGTTCAACCTCCCGTTAAAGAATCGCTTTCAGACGGGTTCCCCGGTGGTTCTGTACCTGGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 345768-346602 **** Predicted by CRISPRDetect 2.4 *** >NC_015865.1 Thermococcus sp. 4557, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 345768 30 100.0 36 .............................. TGGGCTTAGCGATAAGCCAAAGCGGTATTTTCGTAT 345834 30 100.0 38 .............................. TGAGGATGAGTCCACCGGCTATGATTATCTTAGTCCGG 345902 30 100.0 38 .............................. AAAACGCAGCTGTGCCCTTGTTGAGGTACTCTGTGAAC 345970 30 100.0 37 .............................. TCCGCCGGGGGGTGGGCCTCTTTGCGGGTTCTCCCCT 346037 30 100.0 37 .............................. GGTCGGGCAGGCTGGTGAGGGCCAGGTTCTATTATGC 346104 30 100.0 37 .............................. TATGCTCCTCTATACTTTCCTTTCCATGCTCATGCTT 346171 30 100.0 36 .............................. GCCCGATACGGGCTACTGGAGGATTCTGCTTTAATT 346237 30 100.0 35 .............................. TCATCACGAAGAGGGAGAGGGTTATCACCCTCGAA 346302 30 100.0 37 .............................. CGTATTCGTCGTCCCTGTGCGGTGGCGTCTTAAAGTG 346369 30 100.0 36 .............................. GTGAGCTCGTACTCTGCAAGATCGTTCAGTTCAATC 346435 30 100.0 38 .............................. TCGGCTGGGTTGGCGGGTTTATACGCGCGTGGTCAAAA 346503 30 96.7 39 .............................C TTGGCAACCATGTAAGCCACAATCATTCCAAACAGTATG 346572 30 70.0 0 .............C.C.T..ACCCA....C | C [346584] ========== ====== ====== ====== ============================== ======================================= ================== 13 30 97.4 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TACAACCCAAGGATAAGGTACTGATTCGTTTCCATCACGCTGATTCTTCTCTTTTCTGAATTTCCGGGCAGGTTATGTCGTTTTATCCAGAACAAACCTTCGTATGGGTCCGGGAATCCAGTTCTTGCAGTTCCGAAAATGTAACATCAGGTAATCCCGACACTTTTTTAATATGACGAATTTTCTTCGAATTTCGGGGCGGAGACATTAGGACGCTGGCTTGAACTGTTCCTCCATGAAAATCGGCTCTTCTTGAAAATGTGGGCATTCAAAATGGCTGCGGCCGATTTAACGGGCTGTGTGGGGTCAGGAAGTCTCCGGCACATACACTGCCCCCAGTAACAGGGTGCTGTGATGCGTTTTCTGCCCGTATTCATCCCGCAGCGGCCGCGCTTCTTGGAGACCTGATTGAGGGACCCAAAGGGGGGCTTTCTGCAAAAAGGTTTTATATCGAGGCGCCCATTAAACTCCATTAGGAGAACGGGGCAAAAAACCGCCCT # Right flank : CAAAATCAAAGGGAGCTCACTCCCACTCCCCCATATCGAAGGGATACTTGGTTTTCAGCACCACTATCGTCATCAGACCCGCGCCTATGTACTCCATTATGATGTCCCGAATCTTGTTGTTTATCGGTCGTCCACGTGGGGCAGTATGGTGAGCGAGGCTACGAGCTCTATAAACTCCCACAGGACGCCGATTACGAGGAGCGCCGCCATCGAGTATTTGACGATTGTCTTCGCGCTCCAGCCCTTGTTGTTGATCTTGGAGTATTCCAGGGCCATCTTGGCGAATATCGTCCACATCATCAGGCCGCCGAGGGAGTGCCTATGATGTCGCCGTTCTCGTAGACGTTGTAGAGGTCAACGTTGAGTATCGGGACGTTGAGGAGCGTCACGTGGAAGAGGAAGAACACCGCGACGATTATCATGACGCCGTTGTCATATATCGGGCTTATCCAGGGCCATATCTTCCTGCTCGGGTTGGGTAGAACTTCCTGACGGAGAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 701929-703706 **** Predicted by CRISPRDetect 2.4 *** >NC_015865.1 Thermococcus sp. 4557, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 701929 30 100.0 36 .............................. TTACGACCACCTCCGTGTGGGTTTTCAGTACTCTTT 701995 30 100.0 37 .............................. CGCTTTGTTAGCTTCCGCTGTAACAATCGCGGTTGTT 702062 30 100.0 39 .............................. GATGACCTTAAACGTGGTCCCATCCTGCCGTATCTCCAT 702131 30 100.0 37 .............................. CAGAGGGACCACTCCCCCCTGTTTCATCTCTGCGTAT 702198 30 100.0 38 .............................. AGGACGTGGAAAAAGTCGTCAGGGACTTTTTCGGGTGG 702266 30 100.0 38 .............................. ACTTCGCGAAGTACCACCCCAGGCTGTACAAGCGGCTG 702334 30 100.0 37 .............................. TAATCTCCAGTGGAAAAATAAAACCCCTTACTCACCC 702401 30 100.0 37 .............................. CAGTTTTCTCGTTGAGAGGCCAGAGCACGTCGAGAAG 702468 30 100.0 37 .............................. TAACCTGAACTTCCTGAAGATATAAGTCATTTCCCCA 702535 30 100.0 38 .............................. TTGAAGTAGTCGTCCCATATCTCGTTAGCCAGGCGAAC 702603 30 100.0 36 .............................. TGAATTATTTCCACACTTTAAAAAGAACCGCAAAAA 702669 30 100.0 38 .............................. CACTAAGGTGAAACTGACCCCCAAGGGGTTCCTTTACC 702737 30 100.0 37 .............................. TTAGCAGATACTGGGTATGACATTCGTGATATTGAGA 702804 30 100.0 37 .............................. TTTTTATCCTCTCTACGACCTTTAAAGCCTCCTTCTC 702871 30 100.0 37 .............................. AACGACGGCCTCACAATTGGGGCGTTCATCACCGGCG 702938 30 100.0 37 .............................. GTTGGTTGATGCTGGGGTTATTTATCGTTGGAGGACC 703005 30 100.0 36 .............................. CACTTGAGAACGGCCACGCCACGGACGAGGACATAG 703071 30 100.0 36 .............................. TTCTGACCACCTCCACCGTCCGTGAAGCCGACCTTG 703137 30 100.0 37 .............................. CGAGGAGAACGTCTATTTCAACGAGTATGACGTGGCA 703204 30 100.0 37 .............................. AACATCGTCGAGAAAATCGTCGCGAGCATCGCCCCGG 703271 30 100.0 36 .............................. CGACTCCCTCGCTGAAGAACTACCAGTTTGATCTTC 703337 30 100.0 37 .............................. TGCATCGATAAGGGTGTGCTCGCCCGTGAGGTTCGTG 703404 30 100.0 37 .............................. TTGTTTATCACGGGCGGGGCCGTCATTTGGTATCCGG 703471 30 100.0 38 .............................. GTAGACTCTAATGTCGCCAGCGTCGTATTCGTCAATAG 703539 30 100.0 40 .............................. TGAAAATCCACCAATTCTGACCTGCGCCCCACACGGTTAA 703609 30 100.0 38 .............................. TAGCCGCGGCTCCTTTCAACCCCACCACGGTGATGACG 703677 30 90.0 0 .............C...A...........A | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AGAACCGGAGCTTTTAGGGGTTGCGATAGTGTGGTATCACATTCAAACCCCCGAAATTCAGTGAAAACGGGCGTTCAAGATGGATATTCAAAAATTGGGCCCGATGAAGGCAGGGGAAGTCTTAAATAACCAGGCGTTATCATATCACGTTCCGTTACTAAATTTTCTTCCAATGTAACGAAATTTTTTCAGAAACGGCAGAAACGGCATGGTGGGGCCAGAAATAGGCCACACTCCAGGGAAATGAGTTGCTTGGCCTATTGAAGGAGTATAAGTCCAGATTTGGACAAATAGAGCGAGAAAAAGGCGCGGGAACCCACAGTGAATGGGCGCGAACCATACGAACGTGCCCGAATCTTTCCCCAAAGGCCTCAGATCTCAGGGGAGAAAGCCCGAATTGATGGTTCCAACGGGTTTCCCAAAAACCCCTCCAAAGAAAGGCTTATAAAAATAAACGCGTTTTATTTCTTTACAGGGCAAAAGAAAGTAAAAGCCGCCCT # Right flank : ACGAAGAACCAGAATCTACTCCCTCTGCGCAAGCTCCATCTCGAAGACCCTTTCGAAAACCGCCTTGTGGTTTCCGAAGGCCTCGAACATTCTGCCGGAGTAGTTCTCGGAGGTGGTTTCGAGGAACAGCCGAAGGTTTTTGCTTATCTCGTCGCTCATGGGGACGTGGAGGGGTGAGGGTTCGTAGTAGTCGAGGCCCTTCATGAGGGCCGTTGAGAAGTACCAGAGCGTTTTCCTGACCTTCCTGCCCTTTATCGTGGAGAAGCTTGCCTCCATGCAGTTGAACGCCGCGTGAAGGAGGACTATCATGTCGATCTCGACGCCGCGCTCCAGAAGCCTCTTCCTGCCGGCGTCCTTTCTGAGGTCCGTTATCCTGTAGCCGCTTCTCGTCTGTTCATCGTAGGGCACCTCAATGCCGTAGATGCCCTCCACCCTGGGGTCGTAGACAAGGACCTCCGTTCCGCCGACGATGTAGAGCTTTCCGTCGCGAACCTCAACGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 5 1907425-1908328 **** Predicted by CRISPRDetect 2.4 *** >NC_015865.1 Thermococcus sp. 4557, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1907425 30 100.0 37 .............................. TCGGGAACGCCCAAGTTTATTACGCGGCCGATTACCT 1907492 30 100.0 38 .............................. CGGTTGGCTCATCGGTAGAAACGGGCTCATCTATAATC 1907560 30 100.0 35 .............................. GAGGACGTGGAAAAAGTCGTCAGGGACTTTTTCGG 1907625 30 100.0 36 .............................. AGATGAAACGCCGTCTGGACATTGACGATGAAGAAA 1907691 30 100.0 39 .............................. CGAAAACGGGTCGGGCTCGAACTCATCAAGCTCAAAGGC 1907760 30 100.0 36 .............................. TTTACTAGCTCTGGTGCTATCAACGCCCAGGTGTAT 1907826 30 100.0 38 .............................. GGAGGACGACGGAGCCCCTCATAGTCGAGGGGAAAGGA 1907894 30 100.0 37 .............................. AGTAGGTCCCAGTTTTGTTAAGTAGCGGCTCAATCTC 1907961 30 100.0 38 .............................. TTGGCCTCGGTCGCGTTCACCTGGGTAAAGGTCGCGTT 1908029 30 96.7 38 .............................C TGGTAGAATGTGTTAGGTCCTGGGTTGAGCGTCTAAAG 1908097 30 96.7 36 .............................C TGGAATACTTTGTGGACAGCATTCACGCACAAGACG 1908163 30 100.0 35 .............................. CAGGCGCTCAGGGCCGGGGACATACGGGTCGGCCG 1908228 30 90.0 38 .......C........A............T GGTGACGATGATGGCCCTGTCCTCCCTGCTCCACTTGG CT [1908240] 1908298 30 86.7 0 .............C.CA.......C..... | C [1908310] ========== ====== ====== ====== ============================== ======================================= ================== 14 30 97.9 37 GTTGCAATAAGACTCTGGGAGAATTGAAAG # Left flank : GTCTGGAAGCTGAGGGAGCTCGGGTTTGAGGTCCTATCACGCTGAGGTTTCGCCGTTCTAAGTTTTCTCCGCCATAACTCCTGGAATTTCGAAAAGCCCTTTTCTTCACTCCTTGGAAGGCGATTATTTGGGGCCTGGAACTGTGCCCACATGTTACTGTTATGCCAATTCATTATAACGAAAATTTTTCGGAGATTGAAATACCGGCGGCACGGAGGAGAGGGCATGGATATCCCCACCATAAGTGAGTCTTTTCCAGTTTATGGGGGAGTTACCGGCCTGTTTTAAATTCCGAGCCCTTTGAAGTCCGGGGAACCCTCATGCACATCTTTGTTCGCCCGAGGATCGCGGCCGTTTCATCCGCCCGATAACTTAAAGGACTCATGTAGTTGCCGGAATTGAGCGCCTGTCGCTGTTCCCCTGACGGGGACTTCCAGAAATGCTTAAATATCGGAAGTTCCTCAAAGCTTTACTGGGCAAAGTGGGGGAAACTCCCGCCT # Right flank : GACAGGGAAACATCGAGAAGATTTGCTACTCACAGGAACTCCCCGAACAGGAGGTCCTCCCTCGTCCCGCCCGCCTTCCTGAATACCCTCTCGCTCCAGGAAACGCCGCCCACCTCCCTCGGTGAGTGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCACTCCCGGATGAAGTCGATGTCCGGGACCCTGTAACGGGAGCTTATCTCAAAGGCCTTGCCCCTAGCCTCCGCCAGCTCGAGTATTTCCTCCAGCTCGTCGGCGGACGGGAAGCCGATGTAGGGGAAGCTGGCCCCGAAGTGGCCGATGATGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGCTCCACGTATTCCTCCGGCCTCTCGAGCCACTGGTGGACGCTCGCTATCACGTAGTCGAGCTTCTCCGCCATGAAGTCCGGGACATCGACGCCCCTGGGGGTTATGTTGCCCTCAATCCCGGCCAGAATCGTCAGCCCCGCGTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //