Array 1 388303-388602 **** Predicted by CRISPRDetect 2.4 *** >NC_011365.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 388303 36 100.0 30 .................................... TCAGCCGGCTGGGCATTGCCCTACGAGAGG 388369 36 100.0 30 .................................... AGGGGAGCGCGTCACCTTCGACAAGGGCCT 388435 36 100.0 30 .................................... CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG 388501 36 100.0 30 .................................... TCCGCACGTTCACGCGTACCAGCATCGCGG 388567 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCGTCCTGGCCGCAACCGAAGCGGTAGCCATGTCCGTGGTGCGCGCCATCGAGCATGGCAGTGCCGCGCTTCTCTCGACTCCAACTCTGAAAGCCCGGGATTGACGGTGCGCGATGAAAGCCGAGGACATCCGGTTCATGTGGCTTCTCGTATTTTTCGACCTTCCGGTTCGCACCAAAGAGCAGCGACGACGCGCCAGTCGCTTTCGCCATTTCCTCAAGGATGACGGCTTCTTGATGTTGCAATTTTCGGTTTACGCACGCATCTGCCGAGGACAGGACGCTGTGGAAAAGCATGTTCGGCGGGTGCGGTCGAATCTTCCAAAGGAAGGTAGCGTTCGGACACTACAAATCACGGACAGGCAATACGGACGGATGGAATTGATGCTGGGCCTTGCGCCAAAAACCGAGCGAATCGGACCTTCTCAGATGGTGCTGTTGTGATTTCGGCGTCAAAAAACGCGGAAATCACAACAGTTCCAATTACTTCCCTGCAAGGT # Right flank : CTGCTCTTAGCTGTGCCGGTGGATTTTGTGGGCACGAAGAACTCATGATTTTCATCCAATTCTTCCGGGTTTTCCACGCTGCTGGGCGGGTTCCCTCTGGCGCGGCGGGGCCGGTGTCGCTACATCGCCCTGCATGATCGACCGTGACGCCATCGCCGCCGCCATTCCCATGCCCATCCTGGTCGCGCCGCAGGCCATCCTGCGGCAGAAGGCGCGCCCCGTCCGGCCCGAGGATGCGGCGGGCGTGCGCGATGCCCTGCCGCGCATGTTCGCCGCCATGTACCAGGCCCCGGGGATCGGCCTGGCGGCCCCGCAGGTCGGGATGGGCCTGCGATTTGCCATCGTGGATTTGGGCGAGGAAGGCGAGCGCCAGCCGCTGATCCTGATCAACCCGGACGTGATCGCGGAATCGGACAGCCTGGCCTCGCGCGAGGAAGGGTGCCTGTCCCTGCCCAACCAATATGCCGAGGTGATCCGCCCCGACCGTGTCCGCGTGCGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 461969-460172 **** Predicted by CRISPRDetect 2.4 *** >NC_011365.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461968 29 100.0 32 ............................. ACGCCCATGTGTGTGTCAGGATATTCCCCACG 461907 29 100.0 32 ............................. CACAAGCAGGCGCTCCAGGCGCAGGTCTTCGC 461846 29 100.0 32 ............................. AGCATCGTTTCGATCTGGTGCCATTCCACGTT 461785 29 100.0 32 ............................. AATTGGGGGATTGCGAAAAACCCCCTTAACTG 461724 29 100.0 32 ............................. CTGCGCCTGATATTGTGCTTCGTTTGACGCAA 461663 29 100.0 32 ............................. ATCGTTCGCGGCATCACCGCCGAACGGATGGT 461602 29 100.0 32 ............................. ACCGACGACCTTGATTCCCGCCACGCCGCGCT 461541 29 100.0 32 ............................. GTCAGGAACGTGGACAGCACGCGCGAGAACGT 461480 29 100.0 32 ............................. TAGTTGTTCGCACCCAATTCAATGGGGGTCGG 461419 29 100.0 32 ............................. GCCGTAGACAGTCAGGCCATCACTTCGTCGGG 461358 29 100.0 32 ............................. TAGAGGATCAGCGCGATCGTGATCCAGTTAAG 461297 29 100.0 32 ............................. GTCCCCGGCTGGGCGGTGCTGCGGGCTACGCC 461236 29 100.0 32 ............................. GCCATGTCGTCCGCTAAGATGGTCCCGAGCCA 461175 29 100.0 32 ............................. AAACGTCACATGGGGAGGGTGCCGGGTCAATG 461114 29 100.0 32 ............................. GTGCGGCGATTGGCCGCCATCACCTCCAGCAC 461053 29 100.0 32 ............................. GTTGCCGAGGGTGTGCGCGATCTGGTCGAGCG 460992 29 100.0 32 ............................. GATAAAACATGGCCGACATTACCGTATCGAAT 460931 29 100.0 32 ............................. GCGCTGCAATTCCGCGATTTGAGAGCGACGGC 460870 29 100.0 32 ............................. TCGTTCAGCCGCCACGCGAATATTTTTTGAGG 460809 29 100.0 32 ............................. GCTTCTAAAACCCTCCTGCTGCTTCAACAGAT 460748 29 100.0 32 ............................. TCCTGCATGATCGGAATCTCATAGACCCGCGT 460687 29 100.0 32 ............................. GTTCTTGCATGGAGAGTGTCGGCTGAGAAAAG 460626 29 100.0 32 ............................. GATATTAGGATGAGATGGGAATCCGGTGACTC 460565 29 100.0 32 ............................. CGGACTGGTTCCGGCGTCGGCGCAGGATCAGG 460504 29 100.0 32 ............................. GCGTCGAACAACCTCCCCTTCACCGTCGCGGC 460443 29 100.0 32 ............................. CGGACTGGTTCCGGCGTCGGCGCAGGATCAGG 460382 29 100.0 32 ............................. GCGTCGAACAACCTCCCCTTCACCGTCGCGGC 460321 29 100.0 32 ............................. ATCTTGAGTTTGGGGTTGCCGAGCAGGGGGAC 460260 28 96.6 32 ........-.................... CAGGGTCTGGTGATCCTGGACGAGGCCGCCTT 460200 29 79.3 0 .......T....TA...A........T.T | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.2 32 GTGTTCCCCGCACGTGCGGGGATGAACCG # Left flank : TCCTTTCGGCAGGCGGTGCCGAGATGCCTCCGGCGCAGGATGAGGCCATGCCCGTGGCGTTCAAGGACGCGAAAGGGCTGGGCGATGCTGGTCATCGTGGTTGAAAACGCACCCCCGCGCTTGCGGGGGCGTCTGGCGGTCTGGCTTCTGGAAGTGCGCGCCGGCGTCTATGTCGGCACGTACGGTCAGCGCGTGCGCGAGATGATCTGGGGACAGGTGTGCGCCTATATCGAGGATGGCAACGCCGTCATGGCATGGGCCGCCCCGAATGACGCCGGATTCGAGTTCGATACCTGTGGACGCAACCGCCGTGTAGCGGTTGACTTCGATGGTCTCCGACTGGTTTCGTTCGGACCGGAAGCCGCCCTTCCGGCACAACCCGGCCCGGCCGCCACCACCCCTCCGCGTCGGCGGGGGCGGGGCGTACTCTAACCCAGGTTAAGATCGGTAGAATCTTTGACAATAAAATAGAGATTTGAGATCAATGTTTTCCACGAAGA # Right flank : GCCGGCCCTGCTGAAATTCGCGGCCGATGTCCTAACTTTGGGCTCAGACGCTCTCCCGGGCCCGCTTTTCGCGCGCCGCCTCGGTTGTCGTCCGACGCATTGCGTCGGCGCCGGACGCCAGGAACACGAAAGAACTGGACGATGTGTGACGCCGTGGGCGGTCGTGATGGAATGGGTGCGCAGGATCAGGTGACACGGCGTGCAGGTGGGGCCAGCCAGAACCCCACAAACGATCCCGCCATGCAGGCGGTCCTATGGTCGGCTGAATATCACCATGTCGCTGCACGCCGCAGGCCAAATATAGGCGAAGCGAGAAGGAGATTCCATGGCAGCCGGCGTCGGCATGGATTGGGACGGGTTGCAGGGCACGCGGATGCGTGTTCCCCGCATCCGCGGGGACGAATCGAGGTGGCAACGGCCCTGTTGCCGAAGGACGCTCTTCATTGCCCGCGCGCCCGGCGCCCCCGGGTCAGTTCCGTCACCACGCCGTGCAGGGTGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1814792-1817998 **** Predicted by CRISPRDetect 2.4 *** >NC_011365.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1814792 32 100.0 35 ................................ AAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGG 1814859 32 100.0 34 ................................ CGGATGGCATCGGGGTGAAATGCGCGAACAGGTC 1814925 32 100.0 33 ................................ GTCAGCATGCTCATAAAATCCGCCAGATTGGGC 1814990 32 100.0 34 ................................ TCGCATCTGCTGACCTGATCAAGCGCAACAAGGT 1815056 32 100.0 34 ................................ CGGTCAGGACGATGGGCAGATCCGCAGACTGTCC 1815122 32 100.0 34 ................................ CGATATGGCATCGGAATGGGGCGTCAGCATTCTG 1815188 32 100.0 34 ................................ GCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGAT 1815254 32 100.0 34 ................................ TACGAGACCGTGACGGCGGCGGTGGCTGACTTTG 1815320 32 100.0 34 ................................ ATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGA 1815386 32 100.0 34 ................................ CCCGGCCAGCGCAAAATATCCCGCGCCGTCCACG 1815452 32 100.0 35 ................................ CGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGA 1815519 32 100.0 34 ................................ GCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAG 1815585 32 100.0 35 ................................ CCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTC 1815652 32 100.0 34 ................................ TGTTGCAGCAGGCCCCACGCAAGGGATGGCCGAT 1815718 32 100.0 35 ................................ TCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAG 1815785 32 100.0 34 ................................ ACGGAATTTTACGCTCCGACATCATCTAACCCGC 1815851 32 100.0 34 ................................ AGGAGGGTGATATCGAACGAATATCCGATCGGAA 1815917 32 100.0 35 ................................ ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC 1815984 32 100.0 34 ................................ CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC 1816050 32 100.0 36 ................................ TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC 1816118 32 100.0 33 ................................ ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC 1816183 32 100.0 34 ................................ TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA 1816249 32 100.0 34 ................................ TGGGTGACGTAGATATACGACCCGTCGCTAACCT 1816315 32 100.0 34 ................................ GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC 1816381 32 100.0 33 ................................ AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG 1816446 32 100.0 35 ................................ GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA 1816513 32 100.0 34 ................................ CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT 1816579 32 100.0 34 ................................ TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG 1816645 32 100.0 33 ................................ GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT 1816710 32 100.0 34 ................................ TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA 1816776 32 100.0 34 ................................ GCGATCACGTTGCGGATCGACCGTTCGGAACGAC 1816842 32 100.0 35 ................................ CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG 1816909 32 100.0 34 ................................ CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA 1816975 32 100.0 34 ................................ GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC 1817041 32 100.0 34 ................................ CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA 1817107 32 100.0 34 ................................ CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG 1817173 32 100.0 34 ................................ CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG 1817239 32 100.0 35 ................................ CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG 1817306 32 100.0 34 ................................ ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC 1817372 32 100.0 35 ................................ CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT 1817439 32 100.0 35 ................................ ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG 1817506 32 100.0 33 ................................ AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG 1817571 32 100.0 33 ................................ TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC 1817636 32 100.0 34 ................................ CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG 1817702 32 100.0 35 ................................ AGGAACAATCACTGCCCGCAATCCAGACAATTCCG 1817769 32 100.0 33 ................................ GTCGATACCCAGCCACTGCGGCATCTCGAAATT 1817834 32 100.0 35 ................................ CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT 1817901 32 100.0 34 ................................ GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT 1817967 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 100.0 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : TACCCAGCATTCGTGTGGAAATAGGCGATGCTGGTGCTGATTACCTATGATGTAAACACCGAGGATGCGGCAGGCCGTAGACGGCTACGGCGCGTAGCACGCGCCTGCCTCGATTTCGGCCAGCGCGTGCAATATTCGGTGTTTGAATGCGAGGTGGACCCCGCACGCTGGACGGCCCTGCGGGCGCGCCTGATCGCAGAGACCGACACCACAAAGGACAGCCTGCGCTTCTATCAGCTTGGAGCGAAAGGAAAGCAGCGGGTGGAACATATCGGTGCAAAGCCCGTCCTGGACCTGGATGGACCGCTTCTGTTCTGATCCTGCGCGATACGAAAGCTGTTGGGCAAACCCCTGCCGATTCGCGCATCTACCATGTGGTTTCCTATCAATGTGTTATGCCCCAACGCAGATCGCTTGCCATACTCACTGCACCAATCTGGCGATGGTTCGCGGAACAGACCCATTTTCCCTTTTCTTGACAAGATGATAGTATGCGCGCC # Right flank : CTTCGACCAGATCATGGCGGGCGGAAGCACTGAAGCGTCCCGGGTTTCGCGGAGGCTCCTATCTGTGAGAAGGAGCTATGATGAACACGATGAGCCAGAGATTTTCGCCTGAGGTCCGTGAGCGTGCGGTCCGTATGGTTGGGGAGCATCGGGCCGATTACGGGTCGGAATGGGCTGCGATGACATCGATTGCTGCCAAGATCGGTTGCACGGCGGAGACCTTGCGCCGCTGGTGCCGCGATGAGGCCAGGCGGCGAGCGGGACCGGCGGGGCAAGCTGGTGACGAACGCGTTCGGCTCAAGGAACTTGAGCGCGAGGTCAAGGAGTTGCGCCGCGCCAACGAGATCCTGCGCAAGGCATCGGCGTATTTTGCGATGGCGGAGCTCGACCGCCGCGGGAAATGATGATGGCGTTCATCGACGCCCATCGCGAGGACTTGGGTATCGAGCCGATCTGCCGCGAACTGGCGATTGCCCCATCCTCCTATCACGAACATGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1819355-1820112 **** Predicted by CRISPRDetect 2.4 *** >NC_011365.1 Gluconacetobacter diazotrophicus PA1 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1819355 32 100.0 33 ................................ TTAGTTTCATGAGTTTGGTGAGTTATACGAACT 1819420 32 100.0 35 ................................ CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT 1819487 32 100.0 34 ................................ AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT 1819553 32 100.0 34 ................................ CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG 1819619 32 100.0 34 ................................ TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT 1819685 32 100.0 33 ................................ ATCGCGCATGGACCGCACCACGGGATTCCGGTC 1819750 32 100.0 34 ................................ TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG 1819816 32 100.0 34 ................................ GGAATGTGAGGGATCGCGATGCGGAATGATTGGT 1819882 32 100.0 35 ................................ CGTCACTGTGACGGGCGCTGACACGTTCACGTATC 1819949 32 100.0 34 ................................ ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA 1820015 32 96.9 34 .........C...................... GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC 1820081 32 81.2 0 .........CAC....A....G.....A.... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.2 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Left flank : TCGTGATCGACGCCTATGCCCGGCGCATCGTCGGCTGGAAGGTCAGCACGTCAGCCACCGCGGGCTTCGTGCTGGACGCCCTGGAGTAGGCGATCCATGCCCGCAGGCCCGGACCCGAGGATGGCTTGATCCACCATAGTGACAGGGGCGTCCAATACCTCGCCATGAATTACACCCAGCGCCTGGCCGAGGCCGATCTGGTACCCTCGGTCGGCAGCGTCGGGGACTCCTATGACAATGCCCTGGCCGAGACCATCAACGGCCTCTACAAGGCCGAGGTCATCTGGCGGCAGCCTTCCTGGCCGACCGTATCGGCCGTGGAAATGGCAACATTGCGCTGGGTCGATTGGTTCAATAACCATCGCCTCTTTGGCCCCATCGGCTATATCCCACCCGCCGAGGCCGAAGCCAACTACTATGCAGCCCTCGAGATCATCGATATGGCTGCGTGACTCAAACCAAATGGCCTCCGGGAAACCCGGGACGCTTCACACGATAAC # Right flank : CACGGCAAGAATGCGCCTCGCATGCAGGGGCATAGATCGAAGCTATACAAGGACTCGGGTTCACTTCAGCGACCATCCCGAGAGAAGCTGCTGTCGGTCTACCCATCCAGCGACTGCAATTCGAACAGGCGGCGATACAGGCCCCCGTCCTGGGTGATCAACTGGGCGTGCGATCCGTCTTCGCGCAGTTCGCCGCGGGCGAAGACCAGGATGCGGTCCAGGCCGACCACGGTGGACAGGCGGTGGGCGATGACCAGTACCGTGCGGCCGACCATCAGGCGTTCCATCGCATCCTGCACCAGGATTTCCGATTCCGAGTCCAGGCTGGACGTGGCCTCGTCGAAGATCAGGATCGGGGCGTTGGCCAGGAAGGCGCGGGCGATGGCCACACGCTGGCGTTCGCCGCCCGACAGCTTGACGCCGCGTTCGCCCACCATGGTGGCGTAACCCTTGGGCAGGCGTTCGATGAAGCCCGCCGCGTTGGCCTGGCGGGCCGCTTC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //