Array 1 302141-301645 **** Predicted by CRISPRDetect 2.4 *** >NC_022080.4 Geobacillus genomosp. 3 strain JF8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 302140 36 100.0 29 .................................... GGTACGGTGATAACCTAGTCCGTGTATTT 302075 36 100.0 30 .................................... TTGTCCTCCTGTTCACTTGCTGTTCGTTAT 302009 36 100.0 30 .................................... CACGATCTCAGCCATGCCTTCATGGTATTA 301943 36 100.0 30 .................................... GCTTCGAGAAGGCCTCTCTCGCGCCCGTAG 301877 36 100.0 30 .................................... TCGGCTGGCGCATGTTCGAGGAACACGCCG 301811 36 100.0 29 .................................... GAGCATGATGAGATTACCACGTTGCAGGA 301746 36 100.0 30 .................................... TACAAGAAACGGTATTTCTGTTTTGAATTT 301680 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGCTTCGTCACCGCAAGCCGGAGCCAGGATCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCATTGCAACTGCACGTGTATGAGTAAATTCATGCGGTTGCTCGTCTTTTTTGACCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGGTTTCGTACATTCCTGCTAAACGAAGGATACGATATGTTGCAGTTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAGGCAACGGACAAACACTTGGCGAGGTTAAAACACAACTTACCCCCTCAAGGGTCGATTCGGGCAATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTTGGGGAACCCACAGCACAGGAAAAGAAAATAACATCTACCCAGCTGACGCTTTTTTAAAAAAACCGAAATGGTTCCCCTTTTTGCATAAGCACATTTGCATTTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATAGCAGGCTTTTTTGGATACGT # Right flank : CATCATCCCCCATGTTTGGCAAATCGGCGGCGACGGGGTTGTTATGGTGAATGTACTCGCCACGGCAATTTGCGCAATTCCACCGCCAGAAAGCGGAAGTCGAGAACCGTCCAAAATGGAAATTGAATCATCAATAAGGAAGATCCATCGTAGTGTTCATGGCAGCTGAAGACGGTGATGTCCCCCAACTTTTTCCGAAATGGTACTTTCAAGTTTCGTGAACACAATAAGAGGAAGGTGCTCCGCTCTTTTTCCGGCACCTTCCCCTGATCGGTCTGTGGAAAGACAAGGTGCGCGCTACCCTTTTATATCCCTCGCCAGCCTCTCGATGATCGCTTCTTGATAGCCGGCTTTTTTCGTTCGCTCGATGGCCTCTTTCACTGGCCGCAGCGGCTCGGACGCCACGGATGCGAGTTTGGCGAGGCGCTCAGGAGGGAGGTCCACGACCGGGTTGGCGGCCATATAATCGTCCAAGGAAAAACGCCAAAGGGTGACGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1885564-1885394 **** Predicted by CRISPRDetect 2.4 *** >NC_022080.4 Geobacillus genomosp. 3 strain JF8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1885563 30 100.0 42 .............................. CAGCAATGACAACGGACAATATTATATTTATGACATTCGCAA 1885491 30 100.0 38 .............................. CTTCGTTTCCTTCCATAATCCCACGCACATACATATTG 1885423 30 96.7 0 .......................C...... | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 98.9 40 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAGCTCGGGCCGAACGACCGCCTCGTCGCTCCGGCGACGCAATACAGTGCGCTGTTGGGCAGCGTCCCCGCTGGTCTTGCCAAAGGCATTGCCGCGCTGCTCTTGTTTGATCATCCGGAAGACAGCGAGGCGGCCGAGCTCCAACAAACGATCCGACAACGCGGGGTCGAAGAGGCGCTTCGGCAATATGCCGGGCTCGAAAGTGCTCACCCGCTTGTGGGACCGGTGAAGGAAGAGTACGAAAAAATGGCTGAAAAGAAAAGATCATAACGATGTATGATGGCATACCGTTGTCGTCGACCTCCAATCATGCCAAAACCCCGGGGGATCGACGACAATGTTTTTTGCGTCAAAATCCTACAGCCAACACGGCTGAACGCTATTGACAGAATTTTTGAAACTTGATATTCTGAAAACAGCTTAAAGGGAAAAGCTTGATTCTATGCGCATTCTTTGGG # Right flank : ACTGTGTAGTACGGCACAACTTTTTTTGTCTCCAATGCAGGATTTTCCCCTCCTGCTGGCGAATGGATATAGTTGAACACGTTCAAAGAGGGGTGATGGAATGGCCATTGACCATGACCGGTTGTTCAAAGAACTGATCCAAACGTTTTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAGCTGTTCACGGATGTGACCGCAGGAGAAAAGTACCGCGTTGATCTGTTGGTCGAGACGAAGCTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTAGAGAATCAAAGCTACGTGCAGCCGTCTTTTCCGGAGCGCATGTTTGTCTATTTCAGCCGTCTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCCGTCTTCAGCCATGATGCCCTCCGCGGGGAGCCGTCCGTGTTTTCGATCGAGTTTCCCTTTGGCCAGGTGCTGCAGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //