Array 1 8021-8354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDR010000079.1 Klebsiella pneumoniae strain MRSN28887 MRSN28887_contig00079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8021 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 8082 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 8143 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 8204 29 100.0 32 ............................. CTCATAGGTATAGGCTGAGTTAACTGAACCGG 8265 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 8326 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDR010000080.1 Klebsiella pneumoniae strain MRSN28887 MRSN28887_contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 34 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 95 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 156 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 217 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 278 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 357 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 418 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 479 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 540 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 601 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================================== ================== 10 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCATAGCCGCCGCCCATGCAACGCGCTATCAGG # Right flank : TCGCTGTATTCACTCACCAGCTGGCTGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-2133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDR010000081.1 Klebsiella pneumoniae strain MRSN28887 MRSN28887_contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. CCTACAGTCACAGCAGGCGGCCAGCATGTGGG 95 29 100.0 32 ............................. TTTTACATCTCCCCCAGGAGACCTTGGGGGAA 156 29 100.0 32 ............................. GCGAGCTAATGCCATACCGCTGTTGTAACGAT 217 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 278 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 339 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 400 29 100.0 32 ............................. GCTGATTTAATTGAGTCGTGGACGCCCCCTGA 461 29 100.0 32 ............................. TTGGCGGCCTGCCGGCGGTTTACGCGGCGGGC 522 29 100.0 32 ............................. GTGTATAGCGAAGTGAAGCAAAAAATGGTTAA 583 29 100.0 32 ............................. CAATCGTAATTTCCAGTCAAGGCGGCTTTACG 644 29 100.0 32 ............................. CGGGGATCGAGGATTTCCGTTTTCACGACCTC 705 29 100.0 32 ............................. GCTACGGTCAGCGCAGGTGATGGCTACCCAGT 766 29 100.0 32 ............................. TGGAGTCTGGTGCATTTGACGGCGCGGTATTA 827 29 100.0 32 ............................. ATCTTCGTCATTGCGATACATACTCACTGCCT 888 29 100.0 32 ............................. CCAGCGGATATGCTCCACGACATGATCAGCGC 949 29 100.0 32 ............................. TAAAATCGATACTTCATTCGCTGCCAATAAGC 1010 29 100.0 32 ............................. CGTCGCTGAATCTCCCAGCCCCAGGTTCGCGC 1071 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 1132 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 1193 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 1254 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 1315 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 1376 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 1437 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 1498 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 1559 29 100.0 32 ............................. CAGCCAGCCATCTGCCGTTGAGTCGATGCTGG 1620 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 1681 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 1742 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 1803 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 1864 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 1925 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1986 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 2047 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 2105 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCTCAAATCACAGACGAACGTTTGGCAAAAATG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //