Array 1 511669-512035 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OD940440.2 Enterococcus faecalis isolate WE0254 chromosome contig000001, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ===================================== ============================= ==================
511669 37 100.0 29 ..................................... TCCCTCTGTACATATCAGAATATGGATCC
511735 37 97.3 29 ....................................T GCAGACTTTGGTGGTGCTGGTCGAAGCAT
511801 37 97.3 29 ....................................C GAAGCACGATTGATATTAGCGCAACTATC
511867 37 100.0 29 ..................................... TCAGTTGTCGGGAAATTGCCGGAGCGTGG
511933 37 97.3 29 ....................................T CATAGCAGACCAACCTGCTCCATCGCTTG
511999 37 97.3 0 ....................................C |
========== ====== ====== ====== ===================================== ============================= ==================
6 37 98.2 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA
# Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG
# Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT
# Questionable array : NO Score: 5.86
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT]
# Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0 Confidence: HIGH]
# Array family : II-A/C [Matched known repeat from this family],
//
Array 2 1801601-1801300 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OD940440.2 Enterococcus faecalis isolate WE0254 chromosome contig000001, complete sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ===================================== ============================= ==================
1801600 37 100.0 29 ..................................... CATACTCCGTATACAGGCGCTGACAAGCT
1801534 37 100.0 29 ..................................... GTTTAAACTATCGTAGTTATTTACAAGTA
1801468 37 97.3 29 ....................................G TATCTATCCGAAATTTACTAACCCCGCTT
1801402 37 100.0 29 ..................................... CCTATTACATTCTTCGTATCGCTTGTGCT
1801336 37 78.4 0 .....................A..ACAA..T.TC... |
========== ====== ====== ====== ===================================== ============================= ==================
5 37 95.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC
# Left flank : TGTATATCCTCATCAAGTAGTAAATGCCTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAAACCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAAAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG
# Right flank : ACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTCTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAATCCAATTTGCGATGACAACAGTTTTCCACTTTTTCTTCGTACCGTTTTCAATAGGATTAGCACTTGTT
# Questionable array : NO Score: 5.82
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT]
# Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,4.5 Confidence: HIGH]
# Array family : II-A/C [Matched known repeat from this family],
//