Array 1 61260-60133 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNSH01000002.1 Klebsiella grimontii strain 620255534809-17 620255534809-17_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61259 29 100.0 32 ............................. CTAAGGTTCAGCTCTGCAAACAGGCATTCATC 61198 29 100.0 32 ............................. GCGCTGCCGGTCAGGTAGTTGCTCTTTCCAAT 61137 29 100.0 32 ............................. GTCCAGACTACGACCAGTTGATGAAGAGTAGC 61076 29 100.0 32 ............................. CTAGCAATACGAAAGGTGGAAACCTTTTGCGC 61015 29 100.0 32 ............................. CGCCAGAAAACGATTGAGGCGATACAGGCTCA 60954 29 100.0 32 ............................. CGGTAACATGTTATCACCGCCGATGATTAAAG 60893 29 100.0 32 ............................. AACCTTAGCCATGATATAAAATTGGTCTTCAT 60832 29 100.0 32 ............................. TAAGTTGTCAGTTGCTCAGGCTGACGAGGTAA 60771 29 100.0 32 ............................. CGTACCCGGTTTATCAGGCGTGCTGGGCTTAC 60710 29 100.0 32 ............................. GTGTCTCCATCCATAAGAACGAAGTGAGTGAC 60649 29 100.0 32 ............................. CAACCTGGACGCTGCAATGGATATTCACGCTG 60588 29 100.0 32 ............................. TTCTTTTGAGCAATACTACCTGAACCGTAAGG 60527 29 96.6 32 .G........................... GGATATTCCTTACGTGCTTCCTCAGGTCACAA 60466 29 100.0 32 ............................. GTGATATCCCTTACCCAGGCTTCAAAAAGTTG 60405 29 100.0 32 ............................. TGCGCGCGCTTCTTCTTCATCCGCTCCTTTGG 60344 29 100.0 32 ............................. GACTTATAGCCATCGCCCATGTCGAATACCCA 60283 29 100.0 32 ............................. GGGCGGCCGGTAGTCGTCCTTTCCAATAATGA 60222 29 96.6 32 .............T............... AACAGCCCACAAAACTTTTTGCATGGGGCCGC 60161 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTCTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : CAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCCTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202584-204015 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNSH01000007.1 Klebsiella grimontii strain 620255534809-17 620255534809-17_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202584 29 100.0 32 ............................. ATAACGACCTCAGGATCATAAAGTCCGGTTGC 202645 29 100.0 32 ............................. CAATGTCTCTCATGGCGCAGCTGAACGCCTAC 202706 29 100.0 32 ............................. CCCCATTAGGAGGTTAACGCTTGAGGTTACGG 202767 29 100.0 32 ............................. AAAGTAAAATCGACGTCGCTGGTCATTGTGCT 202828 29 100.0 32 ............................. ATACCGCAGGCGATGAAAGACGTTATAAACGC 202889 29 100.0 32 ............................. TCTGCAGAACGGGCTGACGACCGCGAACCAGA 202950 29 100.0 32 ............................. CCTGTTGGAATTCAGCCAGACGTTGAGCTGCT 203011 29 100.0 32 ............................. GCATGTACCACATGCTCTTGCCACATTTAGAT 203072 29 100.0 32 ............................. CTGTCTTCTGCATCAGGTGACAGGCGACTGCT 203133 29 100.0 32 ............................. GTCTGGACGGCTACTACTGGCACCAGAATACA 203194 29 100.0 32 ............................. GGTAGGTGAGAACAGGGTCGGGGAATCCATGA 203255 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 203316 29 100.0 32 ............................. TTCCTGGTCTGGTTCTTCGGCGGAATCTTCAG 203377 29 100.0 32 ............................. CCACTTGGCCTACGCCTTTAATCATACAAACT 203438 29 100.0 32 ............................. GTTACGAGTACATGTACGGTGGCAATGATGAC 203499 29 100.0 32 ............................. GCATTTCGTTTGCATCTAATGAATCGAATCTG 203560 29 100.0 32 ............................. CTGTATGTCACGATTTCCTTCACACCACCGCC 203621 29 100.0 32 ............................. GGGGCGGGATGATTCAGGACGCATTTATAAGG 203682 29 93.1 32 ...........G.T............... GCGAACGTTGTCGGGAATCTGGGCGGGCTGTG 203743 29 89.7 32 .T.........G.T............... AGGCGGCTATCCTGCCCGACAAGATGAAGCTG 203804 29 89.7 32 .T.........G.T............... CCTGCGGCGCGACGCAGTATCGGGATCGATAT 203865 29 89.7 32 .T.........G.T............... GGTTAGGCGCTGAGTTTAACGCCGTTGCTGAA 203926 29 89.7 32 .T.........G.T............... CTCCCGCTGGACGCTTCGACATGTCTGCGAAT 203987 29 79.3 0 .T...G.....GT........G.T..... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.1 32 GAGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : GTACTTGCTGCAGGTGAAATCCAGCCGCCGTTACCGCCTGAAGATTCGCAACCTGTTGCTATCCCACTTCCTGTCTCTTTGGGGGACTTTGGGCATCGGAGTAGCTAGCGATGAGTATGTTGGTTGTTGTGACTGAAAATGTGCCTCCGCGGCTACGAGGGCGGCTGGCTGTCTGGTTGTTGGAAATCCGAGCGGGTGTTTATGTTGGTGATGTTTCCGCAAGAATCCGTGAAATGATATGGCAGCAGATTTCTGTTCTTGCTGAGGAAGGGAATGTCGTAATGGCATGGGCGACTAATTCTGAATCAGGATTCGAATTTCAAACCTTTGGGGAAAACCGACGTATTCCGGTAGATGTGGATGGGTTGAGATTGGTTTCTTTTCTTCCTTTTGAAAATCAGTAGGTTACACGTTCTTTAATAAGGTGGATTTGTTACTAATAGGTTGGTACATTGTTGGCCGTTGAAAAATGTAATAGAAAACAGATATATATGTTTAGA # Right flank : GGTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCTATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //