Array 1 472385-473695 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIYA01000002.1 Gardnerella vaginalis strain 14019_MetR contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 472385 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 472446 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 472507 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 472568 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 472629 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 472690 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 472751 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 472812 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA G [472834] 472874 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 472935 28 100.0 34 ............................ CCCGATGCGCAATGAGTGATTATGATTTTAGAGC G [472957] 472998 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 473059 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 473120 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 473181 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 473242 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 473303 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 473364 28 100.0 32 ............................ TAATCAAATTATTCGGATACTAAAAACCAACC 473424 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 473485 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT G [473507] 473547 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA G [473569] 473609 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 473670 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.7 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIYA01000004.1 Gardnerella vaginalis strain 14019_MetR contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 52 28 82.1 34 ......................GTGAT. CCTTGTATTCTCAATCAGAGAATACTTTGAGTAT 114 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 175 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 236 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 297 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 358 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 419 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 96.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : ATACGCGGGGGGTGATCCCCCAATGGCTTCCTCATCTCTAGCACGCTGCGCG # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //