Array 1 101155-101302 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLJ01000004.1 Escherichia coli strain G50 NODE_4_length_269290_cov_107.698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101155 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 101215 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 101275 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTGTTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127875-126871 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLJ01000005.1 Escherichia coli strain G50 NODE_5_length_198799_cov_114.069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127874 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 127813 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 127752 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 127691 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127630 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127569 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127508 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 127447 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127386 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127325 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127264 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 127203 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127143 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127082 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127021 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126960 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126899 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154823-153574 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLJ01000005.1 Escherichia coli strain G50 NODE_5_length_198799_cov_114.069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154822 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 154761 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 154700 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 154639 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 154578 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 154517 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 154456 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 154395 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 154334 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 154273 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 154212 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 154151 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 154090 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 154029 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 153968 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 153907 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 153846 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 153785 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 153724 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 153663 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 153602 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65112-65987 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLJ01000009.1 Escherichia coli strain G50 NODE_9_length_176054_cov_53.6905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65112 28 100.0 33 ............................ TTTACAGCCGCGAGCAGTCAGGGCTTAACCACG 65173 28 92.9 33 ...............TT........... TAGTTAATAACACAGGATATAACTATGCAGCTC 65234 28 100.0 33 ............................ CTAAAGAAGTTTGCAACAGATTACGAGCCTCCC 65295 28 100.0 33 ............................ TCAAATCATCAACAATGGCTCCGCCAAGCTCTC 65356 28 96.4 33 ...............A............ TGTCACGCTGTAATTTCGCAGGACATCCATCCT 65417 28 89.3 33 ..........T...A..C.......... TAACGGCGATGAAACGCCGGATTGCGGACAAGC 65478 26 82.1 33 .A.........AA..--........... AAGGTGGAAATAATCGCGAAGCCAAACAGGAAC 65537 28 100.0 33 ............................ GCCATTATGCGTTATTCTCAGTCCGTTGTTCCC 65598 26 89.3 33 ...........A...--........... TTTTTTACCCTCCAAAAGTGTCCTGTTTTTTCC 65657 28 100.0 33 ............................ GCTAAATCACCACAAACTGGAAGATTAGATAAC 65718 28 96.4 33 ....G....................... AAGGCCACCACTCCCGGCACGTTCGCCCACCGC 65779 26 92.9 33 ...........--............... GCATTTTTGCCATTGCTAATCGCAGGCGCCGAT 65838 28 96.4 33 ...............A............ CAGTCCGTGAATTACAAAGACTCCGGGATAATC 65899 28 96.4 33 ...............A............ GCGGTAGACAGAACAGACAGCGAAAAAAGTTTC 65960 28 96.4 0 ...............A............ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 95.2 33 CGATAACCCCCGCACGCAGGGGAAACAC # Left flank : GAACAATCTCATTAACAGGCTCATTCTCCGCGCCGCGCAAAACCGGGGGGATTACCGAGACACGAGCAAACAACGGCGAGCTTTCGCTGATCAACTTTTTCAGCGCAAGCAGTTCGTCGGTAAGTTGTTCAAATGTCTTTCTTAAATCCATAACGGATACCCCTGTTGGTTTATACAGTATGTATTTTAACCAACAAGGGTATTTGTAGCAATAAAACTGTTTTGCTAAATCCTATTCTGATTTTCTCGCTAAAAAATCCTATTCATTTTTACCATGCGTTTACCCCAAAAAAGGGGATGTATCAATACTTGCATTTCTTACGGCCCGTTAACCCCCAGAAGGGGAATGCTATTGATGGCATATTCCTTCGCCCACAACATCGTTAACCCCGCGAAGAAGGGAAAATACCTCACGTTGCTGTAGTGCCGTGTTTGCGTCTCTCGATAACCCCACGCAGGGGAAACATTCAACAAGCTTCTTCAACCATCGCGTAAAATGC # Right flank : CTCTAATCATATTGCATTGATATAAAAAGGAAAAATAGTTCATATTTTTCCTACCGAGAAATTATGCATCACCGGGCTTTAAAATCAAATCCATCTGCCTTTGCAAAAGCAGCGACCATAGCGGACAGCTCTTCACCTTCGATTTTTACACCGCTAGGGCTAATACTGATCTCGCCGAGGGTGACTGGCGTGAGTTCACCCGGCTTCCATGTCGTGACGCTCCAGTTTGCTTCCACCAGCCCGCAGTTGTGATTCGCATGACCGCCGAGACGCGGTTCAGAAGCGAAACGAACAAGCGCAGAAATAAACAGGCCTGCTTCTTCGTCAGTGGCATTTTTAATGCTCATTCGGTGATTCAGTTCAGCCCCGGCTATGAATGCTTCATAGGGGTCAATAGGACGACGAATGGACTCACGGGCTTCGGATTTTTCATCCTTACGAGACTGAATTTTTTCATCCAGTTCGTTAACTTTTTTCTGCAAATCCGCCTTTGTATCTTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATAACCCCCGCACGCAGGGGAAACAC # Alternate repeat : CGATAACCCCCGCACACAGGGGAAACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 104382-104111 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLJ01000009.1 Escherichia coli strain G50 NODE_9_length_176054_cov_53.6905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 104381 27 100.0 34 ........................... GTAAAACGCGTCGCGGTCATATGCAGCAATAACC 104320 27 100.0 34 ........................... GAGGAGGAGACGGCCAAAAATACTCCGCTGAATC 104259 27 100.0 34 ........................... GGGCTGGCGAACGCTCAAGGCTGGTGGAGTGAAC 104198 27 96.3 34 .............C............. GATACTGATACTAAAACGGGATTTTCGTTGTTTC 104137 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================== ================== 5 27 99.3 34 GTGTTTCCCCTGCGTGCGGGGGTTATC # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGTATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACACTGCCAGAAGGTATTATTGACGGTCGAGAGCTGGTGGAGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCCTTGATGAAGGAAATGTGTTCGGGAGTCAGGCTTTGTTATCGGTAGCGGCGACCCTGAAAAAATGCGGTGTCGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCATGTGCTGATTTTTTATATCGGTGAGTATGAGTCTTTTAAGTTTGAAGTTGCGGCACAGTATGATCGGCGCAGAAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGGATATAGTTAGA # Right flank : TGGGCTATATCGAACGCGTTACTGGGGAGTGATTTTCAGAAGAAAACATTCGCTCGCAAAACACCTACAGCTAAAACCGGTTCGCCGGTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGCAGGGATAATACATCCCTGCGAAACTATTTAAAGAAGGTGACGATAATGACTCAGGTTCAGAAAGGTAAAACGGTTCCCGTTCGGCCACCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAACATGACTCGCCGGAGAAGGCAAAGGCAGCGGCAGACGCTGCGATTGATGCTTATCGGGGTGAAGCATGTGATGGCTGGTCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGACAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //