Array 1 145515-139311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWU01000008.1 Gordonia hydrophobica NBRC 16057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 145514 37 100.0 39 ..................................... TTCCGCAATCAGTACGCGGTACCCGTCGACCGGACGCCG 145438 37 100.0 39 ..................................... AGCCTCCGCAAATGGACGCGGCTTGCCGCCGCCGGTAAC 145362 37 100.0 35 ..................................... GGCGGAATGACGCTCGGAGACCTCGAAGCATTCGT 145290 37 100.0 34 ..................................... AGGATATCGTTAACCGACGCACAACGACGCTCAA 145219 37 100.0 34 ..................................... CCGAGACGGGTCACGCCAGCGACAGTGAGACGAA 145148 37 100.0 40 ..................................... AGGGTTGGTGTGGGGTCAGGAGCGGAACCCGGCCTAGCGG 145071 37 100.0 37 ..................................... CGGTCGAGATAATCGACGCCGGTCACAAGGGCTCCTT 144997 37 100.0 38 ..................................... GCGATGGAGCTGAACCAGCTCGCGGACCGCGGCATCCC 144922 37 100.0 36 ..................................... TGGTCGGTGCATTGCCTGGCAGCGGTGTCTCCGGCG 144849 37 100.0 35 ..................................... CAGGACTTCCGACGCCAGCGCCCGCGAGTCTTTGC 144777 37 100.0 38 ..................................... TCTAGTTTACTTGGCGGTACTGCGATCCACTTGTTCGG 144702 37 100.0 35 ..................................... GGCTCATCATCCACCAAAACATCCACCGGATCACG 144630 37 100.0 38 ..................................... GTGAATAGTGGCGCGAAGGGTGGCCGGAATGGCGGTCG 144555 37 100.0 33 ..................................... TCCTTGACACCGTTGCTCCGCCGCCGCCAAGCG 144485 37 100.0 36 ..................................... TTGCCGCCACCAAAGTTCAGGTGGTTGCGGTACGGC 144412 37 100.0 40 ..................................... CGGTCGAGATAATCGACGTCGGTCACAGTGGTTCCTTCGC 144335 37 100.0 35 ..................................... TGTGAAGCGAGTCTAGTGCGCCTAGTGACGTACTC 144263 37 97.3 36 ..........T.......................... GTGGACGCCTTGACCCCGAACTGCGACTCGAGTCCG 144190 37 100.0 38 ..................................... GCAGCGGTGCCGTCTCGGTCAAATACAGTTCGGGAATG 144115 37 100.0 39 ..................................... GACACCCGCCGAAAGATAACGAGCGGTTATTGGTTCGAA 144039 37 100.0 41 ..................................... TGAATGGAAACTCGGTGACGCTTCCCGCGGTCTCGTGGCGG 143961 37 100.0 37 ..................................... CCTCATCCTGCTCGGGGTGGGTGTTCCGGCGGGCGGG 143887 37 100.0 37 ..................................... TTCGTGCGGGGTCTGACCGCAGACGCTAGCGGGTCGA 143813 37 100.0 40 ..................................... AAGCTCGAAGAAGCGTTGCGCGTCCTCAACGAAAGAACAG 143736 37 100.0 40 ..................................... TGGGACTCGATCCGGCCGCGTCGCTCGAACTGATGAAGAA 143659 37 100.0 36 ..................................... CTGACTGCTGCAACATTCAAGGACAATCGCGAAGAC 143586 37 100.0 38 ..................................... CGCCGCCCGCCAGTGCGGCGCGGACGAAGTCGACGAGG 143511 37 100.0 35 ..................................... GTCATCACCCAGAGTGAGTACTCGGGTACGTTCCA 143439 37 100.0 38 ..................................... GCCAAGTTTTACGATCACCTAGGCGTTGATTGTCTTGG 143364 37 100.0 38 ..................................... GGGCTAAGTCGAACCCGATGCCCGAGAGCGTCACCGAC 143289 37 100.0 37 ..................................... GACGGCGCGTTCGCCGAGGTCGGGGTGGATGCGTGCT 143215 37 100.0 38 ..................................... CGGATCGGGCCTGTCGACAAGACGAACCCGCGGATCGA 143140 37 100.0 37 ..................................... AAGCTCGTCACCGATGAGCCCGACTTCTTGCACCTGC 143066 37 100.0 39 ..................................... GAAATCCAGGCACGCCGCTACGAACTCCTATGGGCGGAG 142990 37 100.0 37 ..................................... TCCTTGAGTCGTTCCTGTTCTACAGCGGGTTCGCGCT 142916 37 100.0 41 ..................................... CGGGTGCGGGACTCGATGAGATCGCAGTCCTCCGACTCGGC 142838 37 100.0 37 ..................................... TACGAGACCGGCGACATCCGCCTCTACCTCGGCGACT 142764 37 100.0 38 ..................................... TTGTGTGCGATCCACGCGAGCAGCATCATCACGACCAG 142689 37 100.0 41 ..................................... CCAGACATGACCGCACTCACCGTGACCGGCCTCGATCTCTC 142611 37 100.0 38 ..................................... GGCAGTCAAGGCACCAGCCACCACCGACGAACCCGACG 142536 37 100.0 37 ..................................... CCTCCAACTCATCCGCGCATGGTGCATCGCCCCACGG 142462 37 100.0 35 ..................................... CGCTGCTTCGATCTCGTCCCACGTGACGTCTTCGC 142390 37 100.0 39 ..................................... TCAACGTCCAAACCAAGCAGGCCCGCATCGTCAAACCAG 142314 37 100.0 39 ..................................... GAGTTTCTGGCTGGCCCAGTACGTGCTGACGATGGCGGT 142238 37 100.0 36 ..................................... TCGATCATGCTGCACCTGCCTCAATGCGACGCTTTG 142165 37 100.0 35 ..................................... ACCAACTCGCGATATCCGCGGCCCGTCGCACCTGG 142093 37 100.0 38 ..................................... CTCTCAGCATCGTCCGGGTGTGGCAGTTCTCCACTCCA 142018 37 100.0 35 ..................................... CGCTGCAGCGGAAGCCGCGGCCGCGAAGGACTCCG 141946 37 100.0 38 ..................................... TGCGCCCCGCACACGCACCGCGTCGAGCTTCTCGATTG 141871 37 100.0 35 ..................................... AGCGTGAACCGTAGGTGGTTGCCCTCGTCGTCGAC 141799 37 100.0 34 ..................................... GTGACGTGGCCTGATCTTGCTGGGTTTATGGCTA 141728 37 100.0 40 ..................................... TCGCGCACCAAGATCGAGTGCGCGTCGGTATCGGAGTCGG 141651 37 100.0 38 ..................................... TGGAGGTCGCCGCGGGCATCAGGATCGTCACGTGTCGG 141576 37 100.0 39 ..................................... TGCGGGGACTTTGCCTGATGGCACGAATGTGGAGATGGG 141500 37 100.0 36 ..................................... TGATCGACACGCCTTATCCCCCGTACGTCATCGAGG 141427 37 100.0 39 ..................................... CGGACTTGGCGTGAACCTGAAACAGGCCGTCCCACAGCG 141351 37 100.0 36 ..................................... CTGGAACCGCTATCCCAGCTCGCAGCGAAGCACGAA 141278 37 100.0 40 ..................................... AGGTTGATGTTGCCGTCGAATACGCGGATTCGTGGACCGG 141201 37 100.0 38 ..................................... CGATCCGAGACGTAGGCGTCGAACGCCTTGCCCTGCAC 141126 37 100.0 38 ..................................... AGGAATTTCTCTCGCCCAGGCGTGCCCGTCTGGATGCG 141051 37 100.0 33 ..................................... CGAGCACCGGGCCGACCTCGGAAACGTTCTTCA 140981 37 100.0 37 ..................................... CGCGGTGCAGCCTGGCGCGGCCGGGTCCGTCGTGGGT 140907 37 100.0 34 ..................................... ATCCTGAAAGGTAATGATCCTTCACTGGCCGCGG 140836 37 100.0 40 ..................................... AGGAAGCGTTCGCGACCAGGCACACCAGACTGCCGTCGCT 140759 37 100.0 37 ..................................... CCGTACGGCGCGCCGGTCACGCCGAGCTGCTGCTGGA 140685 37 100.0 36 ..................................... TTGGTAGTAGGCACTCTCAATGTGTGTGAGAATAAA 140612 37 100.0 40 ..................................... ACCGCGAACGGCATCAGCGCCCGACACGACCGCGTGACCG 140535 37 100.0 34 ..................................... AACAAACACAAGGCCGCCGCCCACTTCGCGCCAG 140464 37 100.0 37 ..................................... TCCAGGATCGCGGTGTCGAGCCTGTCCTTGGCTGAGA 140390 37 100.0 35 ..................................... TGATCAGTCTCGGTGGACTGTGACCGGGACTTTGC 140318 37 100.0 38 ..................................... CGCAACCGCATGGCCGAGCACGAGCTGCGCAGCATGCG 140243 37 100.0 35 ..................................... TGGAAATGGAAGAACGCGGGGTGGCGTCTCTCGAG 140171 37 100.0 39 ..................................... CGTGCGGTGATCGTCGAGAACGTCGTCGACGCCGCCAAG 140095 37 100.0 40 ..................................... GCGGGCGATCACGTCCATCATCCGAGCCTCGGCAAGCGGA 140018 37 100.0 37 ..................................... AACATGGAGTTCCTTTCAGGAGGCTCTGCGGTGTCGG 139944 37 100.0 39 ..................................... ATGGCGGCGTTCATCGGGGTTTCGTCGGTAAAGCCGGAG 139868 37 100.0 39 ..................................... CTGGTCAATCGGGCCGCGTACACATCGAGATTCGGACTG 139792 37 100.0 34 ..................................... GCGACCGGCAGCATCCTCGAAGGCATCGGCCAAA 139721 37 97.3 38 ....................................C GAAAGGATTTGACATGAACAAGTTTGAGCGAGCAGCAA 139646 37 97.3 38 ....................................C CGGTCTCGCCGACCGTCGCGCCAGACTCGCCCGATGCA 139571 37 97.3 37 ....................................C GAGGGACAGACGGAACTAAGCAACGGCACCGGCGAGA 139497 37 97.3 39 ....................................C TGGTCGATGAGCCATCGGTTGATGGCATCCATGTCGGGC 139421 37 97.3 37 ....................................C AACGGCGGCCCTGGTGGTGGTCATACTGCGGGCACGA 139347 37 89.2 0 .........G.......G.................AC | ========== ====== ====== ====== ===================================== ========================================= ================== 84 37 99.7 37 CCTTCCGCGACTTCGGTCGCGGAACCTTCGTTGAGGG # Left flank : CGGGATTCGGACGCGATGACTCCGTCTACGAGAAGGCTGTTGGTTGCGTACGACATCGTCGATGACCTCCGCAGAACGAAGCTCGCCAAGGTGCTCCAGTCGTACGGCGACCGTATTCAGTACAGCGTATTCCTGATCGACCTGACCGCAGCCGGGGAAGTGAGGTTGCGTCGCGAGGTCGCTAAGACGATCGATGCGCAAACTGACTCAGTTCTGTTCTGCGTCGTTGGTCTCAGTAGTGGTGGTAGAGACCCCGTTTTGAGCTTCCTCGGCCGTCGCAGGCCGACTCCGGACGAGATCGAGTTCATCGTGTGACAGGACGTCGCGAGAGCGCCGAACACATTGGCAAGTCACGGCCACGTCTCGCGTTGGGAAACGCCTGGTCAGACCTAACTCGCGCTGATTCGCGGTTTCGAGACGGCAGCCGCCTGGCGTGTCCGCGGGTACCGCTCGCGAAGGCCATGGAAAGTGCAGGTCAGAGCTTGTGTATTCTGGGGGCA # Right flank : GCTGGAATCTCCTACACGACGACTGACTCTTACGGCACCTTCCGCCCACACAGCGCAGGTCCCGTCGCCGCACGCCATGCGGACCAACAACAAAGTCGGCAGGAGAGTCAACCTGCACAATTCCGGTCTGGGTAAGGCCGAGCTGTCGGACCTCGACGACCCTCGGATCGTGAAACTGCGTTTCGCAGGCCGGGTTTCCCTCGACCACCGAACACGGCGTCACGTCGTTGTCCGGCGCGTTCGCCGAAGTCGAGAAGGTGCCTACCTCACGCATGACTGACGACGTGTTGGAACGCGCGGTCGTGGCGTTGGGGCGGGCGACCGGCGTCATTTCGGATGCGCTGATCGGGGCGCGGGAAGCGTAGATGCGACCACGGTCGGCGCACTGGGGTGAGCGTGCAGATCGTCCAGCGGCTCCGGTAACTTGCTGCCGAGAAGGGCACGAGCTCGCTGAGGAATAGCAGGGCACCGTCACGCGCTGTAACGACCGTGAAGAACAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCGACTTCGGTCGCGGAACCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //