Array 1 36896-35867 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFPT01000014.1 Acidovorax oryzae strain RS-1 AAARScontig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 36895 32 100.0 34 ................................ TCCTGATAGACAACCTCACACCGCATCCGTGCCA 36829 32 100.0 35 ................................ GCTGCGGCATCGCAACCCGACGTGACCGAAGTCGT 36762 32 100.0 35 ................................ GGCACGACCCACGCCGTGGACCGCGCCATCCTGCT 36695 32 100.0 34 ................................ CCAAAGCTGGAGATTGACCGGCGCTGGCCTTCGG 36629 32 100.0 33 ................................ ACGCTCGAAGGCGCACTGATGTTCTCGGACCTT 36564 32 100.0 36 ................................ GCTACTGCGGGGTGTTGCGTACACGCTGCAAAGCGC 36496 32 100.0 35 ................................ AGGGTGAAGGTCATCTTCTGCGTGTCGGCCGTGGT 36429 32 100.0 34 ................................ CCTGCGCCACCGGGGTCCTGCCACACACCTGCAA 36363 32 100.0 35 ................................ ACGCGCGCCTGGAGGCCGTCCGCGAGATCAAGGAA 36296 32 100.0 35 ................................ CACACCACCCGCAATGCGGGTGCATGGCTATCCAT 36229 32 100.0 35 ................................ TTGACGGGGTTGCCGGTAGGGATGAACAGCGGCTG 36162 32 100.0 34 ................................ ACCGATACGCTTTTCGGCGCTGGCATGGCCTGCT 36096 32 100.0 34 ................................ TACATTGGTGATCTCGTCCGATCCGTCCAGGCGT 36030 32 100.0 34 ................................ AATGACCGCCGCGCCTTGGGTGTGCGACTTATAG 35964 32 100.0 34 ................................ TCGGACCTGGTATCGGTCGCCGGCCACATCTACA 35898 32 81.2 0 ...A.....T.TCC..........A....... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.8 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAACGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAAGCGCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTTTACTACCTGGGCAACGACTGGCAACGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCTCCTCCTCTTCTTCTTCATTCTTCCAATCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGAGAGGTTCGCAGCGAGGTAAGTGATTGATGTGCAAGGGGATTGTTTGGCAAGTTGGGGGCGTTGCCGTGCGAGGGCCCTGTTCTTTGGGCAAGTTCGCGCGCGTTGACGGAAATGTGGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : AGCACGAAGGCCGACGCATCGAACCGGCGCACCGGGTCGCGTGCGCTCCGGCGGGCGCGAGCATTGCGCCACGCCCCCCTACCAGCCAGTTTCCCGAACAGGATTTCCTGTCGGGAAACTGGCCTCAGTACTGCAACGCCGGACGGTCCAGTGAATCCAGGCGCATGGCGTCTTCCAGGATCGCTTCCGTCAGCTGCGGCGTGCTGGCAGGTCCTTCGCTCAGCCCGTAGGCCTGCTGCGCAGCATCGGCTGCCAGCGCATGCTGGGTTCGAGGAGAGTACTGTGCAAGTTCCTGCCGCGTACTCTCGGCCAAGGCAGGATCAATAACCGGCATCGTAGTGAAGATGGCGCCGGGTGTCGGATTGCGAAGACATTCGGCTTCCCATTGCTGCGCCGTGGCATGCAGCGAGGTTCGCGGGTCCTCGATCTGCGCCCTGACGGCCTCCATCCGCGCCAGCGCGTGGGTGGCAGCGGGCTTGTCGAAATGTTCGAGCTCCGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61055-59822 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFPT01000092.1 Acidovorax oryzae strain RS-1 AAARScontig92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61054 32 100.0 35 ................................ GAGCATGTGCGCGAGCGCCGGATAGGCGCCCGTGA 60987 32 100.0 34 ................................ TGTGGATAAAGCCTGCCGGATCAGGCGCATAGGC 60921 32 100.0 34 ................................ CAGCCCACGCCCGAGGCGCTGGAGCTGCTGGCCG 60855 32 100.0 36 ................................ GGCGCCTCTGTCCAGGCGAAAGAACTGGGTGAGCAG 60787 32 100.0 35 ................................ GGCGTGGGTGAGTTCCAAGGCCATGGCCGATGCTG 60720 32 100.0 34 ................................ TGCATGCCGTCAGCGGCGTTGCCGGGCGCTGGAT 60654 32 100.0 34 ................................ TTCATCACGCAGCATCCGCTGAACATGGATGCGT 60588 32 100.0 36 ................................ GTGGATTGGCGTCGTGCGGACCCGCCGCCAGCTGCG 60520 32 100.0 34 ................................ GTTGCCGGGCAGGTCCCCTGTCACGCTGCCTGTT 60454 32 100.0 34 ................................ TGGACCCTTTCGGCGGGTCTGGAACCACCGCGGG 60388 32 100.0 35 ................................ GTCCTTGGGGACCACCACGCTGCCGGACAGAATGG 60321 32 100.0 35 ................................ ACTCGCGTGTACAGGGCGCGGTCGAGCTGGCCCAG 60254 32 100.0 35 ................................ CAGTCAGGGTGTGAGCTTTTTTCCCAGCGCAATTG 60187 32 100.0 35 ................................ CTCCAGACCCGCCACCGCCAGCGCCCAGGACGCCG 60120 32 100.0 36 ................................ AAGGCCGATGCCTCCACGGCCGTCGTGGCCATGATG 60052 32 100.0 34 ................................ AGCAGCAGGCCATCGAGGCACTGGACCTGTCGCA 59986 32 100.0 34 ................................ ATGATCGTCAGCGGTGCGGCGAGGGACGGCGCAT 59920 32 100.0 35 ................................ AGATAGCGGTCCCGGGCAAGGCGCACCGTGTTCTT 59853 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGAGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTGAAGCGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGAGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGCCCCCCATTCCTCTTTTCCTTCCTTCTTTTGGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTCTCCGCATGGGGTTCGCGCGGGTGCAAGTGGTTGAGGGGAAAGGGAATTTTTTCCTGAGTGCCGGACGGGTCGCGCAGGTTGCCAGTCAATCGGGGCGGGTTCGCGGATGTGTGAGGAAAATGGCCGGCGTGGCGCGGGTTTATAAAGGTGCC # Right flank : GGCCGCGTTCAGCGCCAGGATGTTGGTCTGGAACGCGATGCCGTCGATCACGCCGATGATCTCGCTGATCTTGCCCGAACTGGCGTTGATGGCCCGCATGCTTTCCACCACCTTGCCCACGGCCTCGCCGCCCTGGGAGGCCGTCTGCGCCGTGGCCGCCACGTACTGCGCGGCCTGCCGGGCGTTGTCGGCGTTCTGCCGCACCGTGGCGGTGAGTTCTTCCATGCTGGAGGCCGTCTGCTGCAGCGAGGACGCCTGCTGTTCCGTGCGGCGGGACAGGTCGGCATTGCCCTGGGCGATCTCCGCGGCGGCGTGGTCGATCGTGCCCGTGGCCTGCTGGATGCGCTGCAGGATGTGTCCGAGCCGGTCGCGCATGAAGCCGATGGCATGCATCAGGCTGCGGTCGTCGCCGCGCCGCAGGGCGATGTGGGCCTGCAGGTCGCCTTCGGCCATGCGCAGCGCGGCCCGGGCCGCCGCGGCGGGCTCGCCGCCCACCGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41563-46919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFPT01000131.1 Acidovorax oryzae strain RS-1 AAARScontig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================= ================== 41563 32 100.0 35 ................................ CGCAACGGCCAGGGCGGTTTCCGCGCTGTCCGTCT 41630 32 100.0 35 ................................ CCTGCGCCACCGGGGTCCTGCCACACACCTGCTCT 41697 32 93.8 34 ...........T.C.................. TCGAAAAGCCTTGCGACCTCCCCCTGCCCCTTCT 41763 32 100.0 34 ................................ CTGAGGTGCGCGAGCAGGCTGCGGACACGGTTAC 41829 32 100.0 35 ................................ AACAGACCGAACTCGCAACTCAAAGCCGGCACAGC 41896 32 90.6 36 ...........T.C.................A CCCAGCGAGGTGAGGCATGAAGAAGGCGAAGCGCTC 41965 32 90.6 93 .........T.T.C.................. TACATCGGCGACACGAAGGAGAAGGGCCTCGAAAACCCCCGCCATTAGCTATACACGCATAGCTGCCCCATGGCTCACCATCCACTACCTTCT 42090 32 100.0 34 ................................ GGCGCACATCGATAGGCAGAGCTTCGCGCGTGGG 42156 32 84.4 35 .........T.TAC.................A AGGACCTGGCTGCGCAACGCCGTGAAGTTCGGCCA 42223 32 90.6 34 .A...A.......C.................. CGCATGCTGGCGTTCAGGACCTGCTGGAACTGCA 42289 32 93.8 35 .......A....A................... GACCTCATGATGGCGCTGGTGTCCGCCGGGCTGGC TGCATGGC [42298] 42364 32 96.9 35 ...............................A CTGCATGATGTAGTAACAGTCCCAGCCCCACTTTC 42431 32 96.9 35 ...............................A CGCCGCCACGACGCAGCATCCAGCGGCTCATGCGC 42498 32 100.0 34 ................................ AGGCAACGTGAACGCGCCGGCCTTGATCTGGTCG 42564 32 100.0 34 ................................ ACCGATACGCTTTTCGGCGCTGGCATGGCCTGCT 42630 32 100.0 34 ................................ TCGAAAAGCCTTGCGACCTCCCCCTGCCCCTTCG 42696 32 100.0 34 ................................ GACGCACATCGATAGGCAGAGCTTCGCGCGTGGG 42762 32 84.4 35 .........T.TAC.................A AGGACCTGGCTGCGCAACGCCGTGAAGTTCGGCCA 42829 32 90.6 34 .A...A.......C.................. CGCATGCTGGCGTTCAGGACCTGCTGGAACTGCA 42895 32 93.8 35 .......A....A................... GACCTCATGATGGCGCTGGTGTCCGCCGGGCTGGC TGCATGGC [42904] 42970 32 96.9 36 ...............................A CCCAATCACGATTCGTCGCTGCATAGCGGAGCATCG 43038 32 100.0 35 ................................ CGTCACTACCTTTGATCTGCTGCGCGCAAGGGGGG 43105 32 100.0 64 ................................ GTACCGAGCAGAAGCGCCAGATTGAAACCGTTGAGGGTCGCGCCCCGCGTGGGCGCGTGGGTTT 43201 29 87.5 0 ............................C--- - Deletion [43230] 43230 32 96.9 36 ...............................A CGATACGGCCACCAGACTTGTGCCGCCACTCCCAGC 43298 32 100.0 35 ................................ AAACAACAAGATGGACATGGGTTACCACTGGAACA 43365 32 90.6 26 ............................TGT. GCGCCCCGCGTGGGCGCGTGGGTTGC Deletion [43423] 43423 32 96.9 37 ...............................A CGCTACTGCGGGGTGTTGCGTACACGCTGCAAAGCGC 43492 32 96.9 35 ...............................A CGTTGCTGCCCCATGGCTCACCATCCACTACCTGC 43559 32 96.9 36 ...............................A CGCTGGAGAACGTGTGATGCGGCTCCTGCGCCGTAA 43627 32 100.0 36 ................................ GCGAAGGCGGGCGACTTGGTGTTGGTGCAGCGCGTG 43695 32 100.0 35 ................................ CCTTCCCGGCGAAGTGCCCGTAGTGGCCTTGCCAC 43762 32 100.0 35 ................................ TTGATCAACCGCACGAGCCAGGGCACGATCCGCAA 43829 32 100.0 35 ................................ CCAATCACGATTCGTCGCTGCATAGCGGAGCATCG 43896 32 100.0 36 ................................ CCTGCGAGCAGAAGCGCCAGATTGAAACCGTTGAGG 43964 32 100.0 34 ................................ TGTATGGCTACGACGAACCCGAGGAGGTGGGCCG 44030 32 100.0 35 ................................ GTGCCGGTGCGCGCGTCGTAGACGGTCTTGTGCAC 44097 32 96.9 35 ...............................A CTCGAAAAGCCTTGCGACCTCCCCCTGCCCCTTCG 44164 32 100.0 33 ................................ TACTTGATCAGCCAGCACCCCGGGAACGTCGAT 44229 32 100.0 34 ................................ AAACCAGTCACCGGACTGCATGCACTCCGCATAC 44295 32 100.0 34 ................................ TCCACTTGGACGATGGCCGAGACCAGCAGCGCGA 44361 32 100.0 37 ................................ GTGCTCCCGAGGGCTTCACCGAGATCGCTGGCCCGAA 44430 32 100.0 35 ................................ TCGTGGTCATCGAACTGGGAATCAATGATGCCTAC 44497 32 100.0 34 ................................ AGCGGCGACCAGACGCGGGCCCGGCCGGCCCGGG 44563 32 71.9 17 .G...................G.T.A.CTCGT CCGATCCGTCCAGGCGT Deletion [44612] 44612 32 100.0 34 ................................ AAGAACGATAAAAGCGGCGCCTATGGCAGCGAGC 44678 32 100.0 33 ................................ TACTTGATCAGCCAGCACCCCGGGAACGTCGAT 44743 32 100.0 37 ................................ ACCAGCTTGTCATGCATGTCCAGATTGGGAGCCTTGC 44812 32 96.9 36 ...............................A CGAGAACACCTCCCGGATGATTGTCGCGATGTGGGC 44880 32 100.0 35 ................................ GCACCCGAGGGAACCACCCAGGGCAACCAGGTCTG 44947 32 96.9 36 ...............................A CCCAATCACGATTCGTCGCTGCATAGCGGAGCATCG 45015 32 100.0 36 ................................ ACCGTGGTGTTGAACCAGGGCACAGACCAGGTCCAC 45083 32 100.0 36 ................................ GACACGTTCTGGAAGACCTACCCGAAGAAGGTGGGG 45151 32 100.0 34 ................................ ACCGATACGCTTTTCGGCGCTGGCATGGCCTGCT 45217 32 100.0 35 ................................ CCAATCACGATTCGTCGCTGCATAGCGGAGCATCG 45284 32 100.0 35 ................................ AATTGATGTTTCGTCCGGAGTCTTTGGAATGGCAC 45351 32 96.9 36 ...............................A CCCATCAACAGGCTTCGAACCGTCCGGGCAAGTCTC 45419 32 100.0 36 ................................ AATTATCTCGATGCCATGCGTTTCCACCTGATGGCC 45487 32 100.0 35 ................................ AACAGACCGAACTCGCAACTCAAAGCCGGCACAGC 45554 32 100.0 34 ................................ CGCAACGGCCAGGGCGGTTTCCGCGCTGTCCGTC 45620 32 100.0 34 ................................ TCCTGAGACCGCGGCCCCTTGTGCAGGGCCGCCT 45686 32 100.0 34 ................................ TCCTGGGAATCGTTCCAGTGATCGGCTCTCGTGG 45752 32 96.9 34 .....................G.......... CCCACCAACGCAAATATCGGCCGCGGAACTACGG 45818 32 100.0 34 ................................ GTCTTGGCCTTCGGGCATATCCACCATAGTCCGT 45884 32 100.0 36 ................................ AGCGAATGCTGCGTGATGAAGAAGATATCCATGCCC 45952 32 96.9 36 ...............................A CGATCTGGAGGCCATAACCCTCCACGCCGCGGCAAA 46020 32 100.0 35 ................................ AAAAAAAACCGGCTTTTGAACGACAGACTCATCAC 46087 32 96.9 37 ...............................A CAGCGAATGCTGCGTGATGAAGAAGATATCCATGCCC 46156 32 90.6 26 ............................TGT. GCGCCCCGCGTGGGCGCGTGGGTTGC Deletion [46214] 46214 32 100.0 35 ................................ GGGAACACCTCCCGGATGATTGTCGCGATGTGGGC 46281 32 100.0 35 ................................ GCACCTGCGGAATCGAAGTGCGACGGCGGTTGGAG 46348 32 100.0 33 ................................ GTGGTCATCGAACTGGGAATCAATGATGCCTAC 46413 32 100.0 34 ................................ AGCGGCGACCAGACGCGGGCCCGGCCGGCCCGGG 46479 32 100.0 37 ................................ GGGAGCGAGGGCTACGCCAAGGAAGAGCTGCGCGCCG 46548 32 100.0 36 ................................ ACTGCCTGATGGTTGGCATCCCGCAGCAGACGCGCC 46616 32 100.0 35 ................................ GAGAGCGGGAAGGGCTTCGCGAAGAACTTCCGCGA 46683 32 100.0 35 ................................ GGCCTGCGCAGCTACCTCCCGGAAGGCCACTCGGA C [46689] 46751 32 96.9 36 ..............C................. TTGCGCGTGTGTTCCATGACATCGAGGGCGATCACG 46819 32 96.9 36 ........................A....... AGGAACTTGGTTTCGGGAACCAACACATCGTCAGCC 46887 32 81.2 0 ........T...A.AAA....C.......... | G [46895] ========== ====== ====== ====== ================================ ============================================================================================= ================== 80 32 97.3 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAACGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAAGCGCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTTTACTACCTGGGCAACGACTGGCAACGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCTCCTCCTCTTCTTCTTCATTCTTCCAATCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGAGAGGTTCGCAGCGAGGTAAGTGATTGATGTGCAAGGGGATTGTTTGGCAAGTTGGGGGCGTTGCCGTGCGAGGGCCCTGTTCTTTGGGCAAGTTCGCGCGCGTTGACGGAAATGTGGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : CGGCATGCTGGCCCGCATCGACGAAAGACCTCCCGCGTGGGCAGACATCCAGTCAAAGCACATACTGGTTTCCCACCGATGGGAACATCTGACGCGATTCCTCCGCAGGAATCACCTCCACCCGGGGCCAACGCTGCGCATACCGTTTCTGCTCCACCCTCTGCCGGTAGGTGGCTGCACTCGCGCGTACGGGGTTGTGCCGGACCCGGAGCGCAAACAGATCCTCCAGTCCATGCGGGGGCCACGATATGGAGAGAATCGTCTGCCCCGAGCGAAACCCCGACGCAGGTCGCGAACTCCGGCCATAGGTCCGTTGCCTGGGTGTTCTCCATGGCCGGCAGCTTAGCGCCACCCCAGGCGCTTCTGTCCTGAGGCCTCTGTCCGACATCCATCGCGCCCTCTGCCGCGGACACTCTTTCCATGCCCATCCATCTCCGAACCCTCCGCCGCGCCGCAACCTTCGCCCTTTGCCTGGCCGCACCACTCCACGCCACCTGGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //