Array 1 1992252-1989638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062129.1 Listeria monocytogenes FSL J1-175 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1992251 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 1992185 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 1992119 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 1992053 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 1991987 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 1991921 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 1991855 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 1991789 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 1991722 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 1991656 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 1991590 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 1991524 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 1991458 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 1991392 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 1991326 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 1991260 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 1991194 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 1991128 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 1991062 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 1990996 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 1990930 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 1990864 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 1990798 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 1990732 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 1990666 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 1990600 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 1990534 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 1990468 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 1990402 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 1990336 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 1990270 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 1990204 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 1990138 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 1990072 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 1990006 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 1989940 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 1989874 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 1989808 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 1989742 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 1989676 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [1989641,1989644,1989649] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //