Array 1 65642-63975 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWM01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 148_16 NODE_15_length_136565_cov_11.0705_ID_29, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
65641 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
65580 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
65519 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
65458 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
65391 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
65330 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
65269 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
65208 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
65147 29 100.0 33 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACGT
65085 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
65024 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
64963 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
64902 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
64841 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
64780 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
64719 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
64658 29 100.0 33 ............................. GTCGTTCATCAGGCACTACCGGCACTTTTCTGG
64596 29 96.6 32 ....C........................ ATATTCGCCGCTTTCCATTTACCGAACGTAAC
64535 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC G [64511]
64431 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
64370 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
64309 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
64248 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
64187 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
64126 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
64065 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
64004 29 96.6 0 A............................ | A [63977]
========== ====== ====== ====== ============================= ========================================================================== ==================
27 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT
# Questionable array : NO Score: 6.13
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 83025-81899 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWM01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 148_16 NODE_15_length_136565_cov_11.0705_ID_29, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
83024 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
82963 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
82902 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
82841 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
82780 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
82719 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
82658 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
82597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
82536 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
82475 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
82414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
82353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
82292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
82231 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
82170 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
82109 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
82048 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
81987 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
81926 28 82.8 0 ...............A.AA.....G-... |
========== ====== ====== ====== ============================= ================================ ==================
19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 6.20
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//