Array 1 320988-323320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013992.1 Flavobacterium columnare strain 94-081 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 320988 36 97.2 29 ......A............................. TATAAAAGTTTAGTGTTTGTTTAGTGCAA T,TATAA [320989,320997] 321059 36 100.0 30 .................................... CTATCCTACCTATTGGACGGCGGTACTCAT 321125 36 100.0 82 .................................... CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT 321243 36 91.7 30 C.G...A............................. CCTTCGAACAAAAAGGAAAGTCAGGTAAGT C [321248] 321310 36 100.0 30 .................................... GCTTTGAATTTGGTTTAAAGGGTATGCCTG 321376 36 100.0 30 .................................... ATTGAAAGCTGAACTGGATGGTGAATTTAT 321442 36 100.0 30 .................................... ACTAAAACCTTGTACCACATTGCTCATAAT 321508 36 100.0 30 .................................... CGAGAAAAGGGATGCTTACCTGTTGTGGTT 321574 36 100.0 30 .................................... GATTGAGCTATGAGTAGTTGCGATATATTA 321640 36 100.0 30 .................................... CTGTTTAAATCAAACGGTTCCTGTTTATAA 321706 36 100.0 30 .................................... AGTCAAGTTGGTGTTAAGTTTGACATTGAA 321772 36 100.0 29 .................................... AAACACTTGGTTATAATGGTGGGGTTAGA 321837 36 100.0 30 .................................... TTTGTTTGTCCAAACATTTGGCTTAATGCA 321903 36 100.0 29 .................................... CGACTTTCTTCTTTCGCTCCATCTTCTTC 321968 36 100.0 30 .................................... AATGTAAAGATTATCTAAAAAAACTTATAC 322034 36 100.0 30 .................................... AAGTATGTGAATTCACCGCAAACGGCTTTG 322100 36 100.0 30 .................................... TTTTGAGCCAATATTAATAACAGAAGAATG 322166 36 100.0 30 .................................... GACGACCTTGTTTATTATGTTAGCAAACAT 322232 36 100.0 30 .................................... CACAGCCAGCACATTATAAACAGGACTTTT 322298 36 100.0 29 .................................... ATGGTTATAAACATGATGTTGAAGAGGCG 322363 36 100.0 30 .................................... ATTCATCGTTTCCACAATTTGGGCATGTTA 322429 36 100.0 29 .................................... AAAAATAATTTCACAATCTCAGGGAATGG 322494 36 100.0 30 .................................... GATAAAGGAGGAATTATAATACCACCACAT 322560 36 100.0 30 .................................... CATTAGAAAGTATGATAGTTAAGGATTATG 322626 36 100.0 30 .................................... CTAATATTAGTAATGATACTAAAATGGATC 322692 36 100.0 30 .................................... TGGTTCGAGTGATTGGATAAAAACAAGTAA 322758 36 100.0 29 .................................... ATTTTGTTTTGAAGTTGTTGTTTAGTTCG 322823 36 100.0 30 .................................... CCCAATACCTCACAAACTAATACTACGTTA 322889 36 100.0 30 .................................... ACCAGGTTTGTTATTCAATAGCGAAATTGA 322955 36 100.0 30 .................................... AACTGTAATCACGAACCATTACGCCATTAT 323021 36 100.0 30 .................................... TTCTATCCATGCGTCTTTTGTTGCATCCGT 323087 36 100.0 30 .................................... TAACGGGCGTTTCGAAGTTCAAAACGATAA 323153 36 100.0 30 .................................... TATGCAGAGGTGTTCATTAGACAAAAGTGG 323219 36 100.0 30 .................................... AATTGATAAGTTTGCGAGTAGCAATCAAAG 323285 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 35 36 99.7 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATTCTAAAGATATTTCAGAAATAGTAGATTTTAGAGGAAGAGTATATTTAATTGAAGGATTGACAATACAAAGACAAAAAGACAAAAAAACTGGTAAGGTCAATGAATATGGCATCATTCAACTTAGATATTTTAAAGAAGCTAGAAAATCAGAAGAAATTAGCAAAGACAGCTTCAAACCTGATGGAGAGTTCAAAATCAATGAAAACAAACCAACTAGAAAAATGAATCACAATCAATTTACAGCATTTGTGGAAGGAATTGATTTTAAAGTTTTACCCTCGGGAAAATTTCAAAAAATATAAAAAAACAATCACAGAAGTAATCCTCTAGGAATCAACTTCGAATTAAAAGTTCTTTGACATAAAAAAGTAAAAATCTTAACAAAATTAGAATTGTAATTCCTCAAACCATATAGACTTTCACTCTTTGTTGGTGATTTTAAAAGTTTGAGAATAATTTCATTTAAAAACACAAGTTTATATTTGTCATTGGTGT # Right flank : TAGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACATTGCTGCAACGAACTAGCCGTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 758947-757518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013992.1 Flavobacterium columnare strain 94-081 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================================== ================== 758946 25 64.0 15 T.GTA.T..T......C.AC..... CTTACCAACACTTAG G [758924] Deletion [758907] 758905 25 100.0 36 ......................... TACAACTTCCGCTATCTTCTTTTGTGCTTCTGCGAC 758839 25 100.0 40 ......................... GTATCTACAACTTGGTTGTCTAATTCAAAATACCCAGCTT 758774 25 100.0 39 ......................... TATCTACAACGTTAGCCTCTCTTTTATAAACTCGTTCGC 758709 25 100.0 40 ......................... ATCTACAACTGCGGTTTTGAATATCTCGGCAACGGGGGTT 758642 25 100.0 40 ......................... TATCTACAACTTTAAGCTAATTTTTGATTTAATTCATCAA 758576 25 100.0 40 ......................... GTATCTACAACTTATTTGGCATAATTTCTAAATTTAAAAG 758511 25 100.0 136 ......................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACCGAATTCATTTTTTTTGAAGGGTATCTACAACTACTTGGAAATTGTCTAGTGACATACATCT 758350 25 72.0 91 ....T..T............ACTCA CGCTGTTTCTATTGTTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTATCTACAACTAAATCAGCCAAATAATCCGTGAATCTATC 758234 25 100.0 66 ......................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCA 758143 25 72.0 40 T...A...TT.AT..T......... GTATCTACAACACCATCATCCCATTAACGAACGACTGACG CCAA [758135] 758074 25 100.0 136 ......................... AGGGACAAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACCGAATTCATTTTTTTTGAAGGGTATCTACAACTACTTGGAAATTGTCTAGTGACATACATCT 757913 25 72.0 91 ....T..T............ACTCA CGCTGTTTCTATTGTTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTATCTACAACTAAATCAGCCAAATAATCCGTGAATCTATC 757797 25 100.0 66 ......................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCA 757706 25 72.0 40 T...A...TT.AT..T......... GTATCTACAACACCATCATCCCATTAACGAACGACTGACG CCAA [757698] 757637 25 100.0 70 ......................... AGGGACAAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTG 757542 25 60.0 0 AAACC...TT.AA..T......... | ========== ====== ====== ====== ========================= ======================================================================================================================================== ================== 17 25 88.9 62 GTTGGGAAAGCCCTTATTTTGAAGG # Left flank : AATTTTAAACTTTACATTACAAAAGCCTTATTAAAAAATGAATCTGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTAATTAAATATTATGATTATAATACTGAAAAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGACTCGTTTTGTTCCAAAAAAAGAAGAAGAATACTTTGCTTGCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAAAAAAAGCTAAAGAAATAGTTTAAAAGCTATTGCTCTTTGATATTTTGAGAAGGATTTAAAAAAAGGAGTAGCTTTGGGGTATAAAGTTCAGAAAAAGTTCATTTTTTTGTATAAAAAA # Right flank : AGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTTAATTATTTAAAAAATAAATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTAAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCCATATACTGCCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAAAAAAATATTTGGGGAAGAAGCCAGCAAAAATTTGCTTATAGACTTCCTTAATACACTATTGCCTGAACACGACCAAATTAAAGAA # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-2.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [30-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //