Array 1 29-666 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMEM010000006.1 Escherichia coli strain UI_3887 5repeat_trimmed_contig_6, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        29	    29	 100.0	    32	.............................	CCGAATAGACAATGACCGCAAAGTGTCTATCG	
        90	    29	 100.0	    32	.............................	CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG	
       151	    29	 100.0	    32	.............................	AGCCAGACACATTGCTTTATCGCGCCACGCTG	
       212	    29	 100.0	    32	.............................	GCGAGTAAGAGTACTGAGTATTTTAATCTCAT	
       273	    29	 100.0	    32	.............................	GCCATAGACTTTATTAACTTCATTGGGGGTTA	
       334	    29	 100.0	    32	.............................	CGTATCACAACCGGCCTCAGTACGTATCAGAA	
       395	    29	 100.0	    32	.............................	AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC	
       456	    29	  96.6	    32	..........................C..	CAGGGAAACCGTTCGTACTTATCGACCTCAAC	
       517	    29	  96.6	    32	..........................C..	AAGGGGACGGCTACGGGACGCCGCCTATTGAC	
       578	    29	  93.1	    32	............T.............C..	GACGCACTGGATGCGATGATGGACATCACTTG	
       639	    28	  72.4	     0	.A.........C..T..-..T.G..C..C	|                               	
==========	======	======	======	=============================	================================	==================
        11	    29	  96.2	    32	GTGTTCCCCGCGCCAGCGGGGATAAATCG	                                	       

# Left flank :   ATCATTAGGGGATTCATCAGTGCTTAGTG
# Right flank :  CCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACTGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAATCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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