Array 1 30338-29409 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQQ01000002.1 Klebsiella oxytoca strain 404821-16 404821-16_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30337 28 100.0 32 ............................ TATATCGCTGGGCCTACGAACGTGGTTTCGTT 30277 28 100.0 32 ............................ GCGCGCTCAGCTCGATGAAGCAATCAGCAACC 30217 28 100.0 32 ............................ AGATGGCATCGCAAGGCCGGTATCAGGGATTA 30157 28 100.0 32 ............................ ATCAGTTATGACCGGGCAACCGGCGCGGTCGA 30097 28 100.0 32 ............................ TTAAGTTTTCTGCCGCTACATTGTATTCACGC 30037 28 100.0 32 ............................ TCACATAGAGCCAGCCACCGCCGAAGAAGCAC 29977 28 100.0 32 ............................ TGCAGGTGGTTTACATGGCGAGGATTGCGGCC 29917 28 100.0 32 ............................ TCAAATCATCGACACCGGCGCTTATGATGGAA 29857 28 100.0 32 ............................ GCTTTCGCGGCATATCCTCGCCGTCAAAAAGA 29797 28 100.0 32 ............................ TTACGAAAAATTGCCAAAAGATGTTCGTGAAG 29737 28 100.0 32 ............................ CAGAAACAATGTGATGGCGCTTGGTCTGCCGC 29677 28 100.0 33 ............................ TTGCCATCAGGCGCATACACCGGCGGGGATCGG 29616 28 100.0 32 ............................ ATGATACAGGCATATGAGGCCGTTAAGCCCAC 29556 28 100.0 32 ............................ TACATCGGGGTCAGTGTCGCCAATGGTTGGTG 29496 28 100.0 32 ............................ TTCACGGCACGCCATGCCGATTCCAGATATCC 29436 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGTAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATTGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40899-38767 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQQ01000002.1 Klebsiella oxytoca strain 404821-16 404821-16_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40898 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 40838 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 40778 28 100.0 32 ............................ AGCGTCTTCGCGCGACCGATAAGTTGTTCGTT 40718 28 100.0 32 ............................ TGAATCAGGTCAGGAAATACGCGGCACTGGCC 40658 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 40597 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 40537 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 40476 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 40416 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 40356 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 40296 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 40236 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 40176 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 40116 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 40056 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 39996 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 39936 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 39876 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 39816 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 39756 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 39696 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 39636 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 39576 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 39516 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 39455 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 39395 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 39335 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 39275 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 39215 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 39155 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 39095 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 39034 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 38974 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 38914 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 38854 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 38794 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 54366-54158 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQQ01000002.1 Klebsiella oxytoca strain 404821-16 404821-16_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54365 28 100.0 32 ............................ TTTGCCAGCGTCTTCAATAGTTGCACAGCATT 54305 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 54245 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 54185 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //