Array 1 26676-25101 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYI01000034.1 Eubacterium sp. am_0171 Scaffold_0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 26675 33 100.0 34 ................................. AATTACTTTTGCTGAAGTTAACGGAACAAATCTT 26608 33 100.0 33 ................................. AAACGATATCTGAACGTAAAAATGGAAGAGATT 26542 33 100.0 35 ................................. CTCAGAATTTGTAGTCCCGATAAGAATGCACTGCC 26474 33 100.0 33 ................................. CATAAGCGATTGTGCCAGAAGGTGATGCAATTG 26408 33 100.0 34 ................................. TACCAGACTTACGGACTCAGGGTGCTGTGCGTCC 26341 33 100.0 34 ................................. CAGCGCAAACATTGATACTGTCATATCTCTGGAC 26274 33 100.0 34 ................................. ACATGCCCTCATTGTGAATACGATGTGGGAATGC 26207 33 100.0 35 ................................. CTATCCGTTCTGCCGTTTCTGGGAAACCCTCGCAC 26139 33 100.0 34 ................................. CTCCTTTACTAAATGTCAGTTTAACCCACTATTT 26072 33 97.0 34 .C............................... TCTTTTTCTGTAAAGCTCTCAGTCCCTGTATCCT 26005 33 100.0 35 ................................. CGCAAAAATACATGTTAGGTACTAGCCCAGATGCA 25937 33 100.0 35 ................................. TCGTAACCTCTCATCGTTGGTAAAATCATTATCGC 25869 33 100.0 34 ................................. CTCCTAAATGTTAATTTATATTGTATCTGCGATC 25802 33 100.0 34 ................................. ATTCTTCTTTTCCGCAACAAAAACATGACCACTC 25735 33 100.0 33 ................................. AAGAAAAAGACAAGCAGAAGCGTAAGTAAATGG 25669 33 100.0 34 ................................. AGAATGCAGAGGCATTGGTACGTGGTTTTGACAA 25602 33 100.0 33 ................................. AGAATAAAATCGAAACTCCATCGCTTACGGGAA 25536 33 100.0 34 ................................. TCAAAATGTTTATCTTAATGATAATGAAACTTTT 25469 33 100.0 34 ................................. CTCGCATACTCATCATCTTTTGCTTTCAGGTCAT 25402 33 100.0 33 ................................. TATTGTCGTACAGGATGGATGCTTCCTGATACG 25336 33 100.0 34 ................................. AGCAATCCTGGAATCCCGTATTTTGAAATCATTG 25269 33 100.0 35 ................................. TCTCGTTTGATCCACACGTCTCCTGTCCGGAAATC 25201 33 100.0 35 ................................. AAAGTAGCATTGATTACCTAAATGATAGAGAGTTT 25133 33 93.9 0 ....................C..A......... | ========== ====== ====== ====== ================================= =================================== ================== 24 33 99.6 34 GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Left flank : GTTTGAAGAAGGCGAAAAATTGATTTTCTTTGATGCCTATCCCCAGAGTTTTTCTATATCTTTAGATGCACAAAGTCCGCATTATAAAGACTATTACGAGCGGCAGGCTGCACCGACTGATAATCAAAAGGTAGTGCCCATTACATTTATATGTATAAAAGATGTTACATTTAAATTGCATATCGCCTGTCAGAATACAAAATTGTGGAAACAGGAAAAAACACGGATAGATGAAGCAGTAAAATGTATGGTGGAAATATATGGATTAGGGGCTAAAACAGCATTGGGGTATGGCGTAGGAGAAATGCAGTAAGTGTAAAAACAATAAAGTGCGAATCGGTAGCGGACAGGAATTTCCCGGGAGATTCGCACCTTAAAAATAAGGAGGGGAAGGAGATATAGACGGAAAAAATAGAAATTTAATGAGATGAATCAATTGATTTTGTGGGAAATGTATATTATTATGATCTTGAAGTAAATCAAATTTGTTTATTTTTGCT # Right flank : AAATAAGATTACCAGCTAACCCACCGGGAAAAGCCATAGTCACCATCCTAGTACCTCGAATAATAATTAATTTGCTGTTAAACTAACCTAAATTTTCGATGTACTAAGTATGGTTTAAAATTTAAAGAAAATAGCAATTATTAAGGACAAAATTATGTTAAAAGCAATTATTATTGGAAGTCCTGGTGCAGGAAAAAGTACATTTGCCCGGAGGCTTAGAAATTTGACAGGATTACCGCTATATTACCTGGATATGCTGTGGCATAAGCCGGATCAAACAAATATCACAAGAGAAGAGTTTGATACGCTGTTGAATGACATTATAAAAAAGGATAGCTGGATTATTGACGGTAATTATCAGAGAACACTTGAAGCCCGTCTGAAAGCATGCGACACCGTTTTTCTAATGGATTATCCGCTGGAAATCTGCCTTTCAGGTGCAGAATCCCGCATAGGAAAAAAACGTGAGGATATGCCATGGGTCGAATCGGAATTTGATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20997-25345 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYI01000042.1 Eubacterium sp. am_0171 Scaffold_0042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 20997 32 100.0 33 ................................ TGTTCTTTTCGATGCTCAATCTATCTGCGATAA 21062 32 100.0 33 ................................ TGTGGTCAAGATAGTATACAGATATCTTGGATC 21127 32 100.0 35 ................................ CAACGTATCAAAATCTCCAACCGACACAAGCTGAC 21194 32 100.0 34 ................................ GTACCAGAGGGACGTGACGTAGTTCTGCCACTTA 21260 32 100.0 34 ................................ TTATGGGAGTAGACTAGTATTTACTCCGTTTTCA 21326 32 100.0 33 ................................ ATCGTCATCTTCCTGATCAATTCGGACAAACTG 21391 32 100.0 34 ................................ ATCCTGCCCCTCCTAAATGTTAAGTTACCAAATC 21457 32 100.0 35 ................................ CACATATACAAACTGCATTTATAAAGTCCTGTTTG 21524 32 100.0 36 ................................ TCTTCTTGCAAAGGAAGAAAAATTTAGATCCACGGG 21592 32 100.0 34 ................................ CGGTAATGAGTATAACCCAGGACTTTGACGGCGG 21658 32 100.0 34 ................................ TGTAAACTATACGGAATTGAGGCTGGTTTGATGG 21724 32 100.0 34 ................................ ATTATGTAGCATTCGGAGACGTTTATTCCTGATG 21790 32 100.0 34 ................................ TCCAAGACGGCAGTATGGAGGCAAAGAACGGATT 21856 32 100.0 35 ................................ CTCTTCTATTACGCCGCTCTTTGTCAGTTTAGAAA 21923 32 100.0 35 ................................ CATCATAACGGCACTGCGAAACGCCGGTTTCGACA 21990 32 100.0 35 ................................ AGTTCTGCGATTCCAACGTCCTCAGCCGAACTGGC 22057 32 100.0 35 ................................ AATATTTCCAAGATTGATATTGGCAGTATTTATTT 22124 32 100.0 35 ................................ TGCTCCGTGGCATTCGCAAGCCTGGCGCAGATACG 22191 32 100.0 35 ................................ TCCGCATAGTTATCAGTCATTGATAAAAATAATTT 22258 32 100.0 38 ................................ AATCCTCGGCTGCCGGATCGCTGGCGGCACCACATCAG 22328 32 100.0 34 ................................ ATCAACCAGGCTGTCAATTAACAGACACGCCTCA 22394 32 100.0 35 ................................ TCCCGTACCTTATAACACCACATCTATGCTAAGCC 22461 32 100.0 34 ................................ CCAGGTGGCTGATGCGATATCTGACGCTATAAGC 22527 32 100.0 33 ................................ ACCGGACCATATATGAAAGACAAAGGGAAGGGC 22592 32 100.0 35 ................................ AGGTACGAAAACGGAGAAATCGAGAAGGTTCCTGC 22659 32 100.0 34 ................................ TCCCGACATCACAATAAAATGCGTCAAATTGTTT 22725 32 100.0 35 ................................ TTGCAGGGCAGTACGATACGGAAATTTGAATGTTA 22792 32 100.0 33 ................................ TGCGCAGGCATTATGGAAAGAGCTGCAGAATTG 22857 32 100.0 35 ................................ CGCCTTTAAAGTACTTATTTTGGCATCCGAAGCTT 22924 32 100.0 34 ................................ ATCGATGAAAATAGTGTACGTCCCATCCTCGTTT 22990 32 100.0 34 ................................ CGTTCCTGGAATTTGCTTTTTTAAAAAGATCAAC 23056 32 100.0 33 ................................ ATAGCCGGATTTGCGGGATTAGATGCTGAAACA 23121 32 100.0 35 ................................ AGTACATCGGTGGAATATTAAATCCGGGGCAGTAC 23188 32 100.0 33 ................................ CCCATATTTCTCAGCAGGGAAGATATATGCTCG 23253 32 100.0 33 ................................ CTCCGGCGGGAAGATTGCAGATAGGACAATTAA 23318 32 100.0 33 ................................ ATCGGTTCTGATTGATACTATTTGATACTATTA 23383 32 100.0 33 ................................ TGAATAATCTCTTGACAACTGGTTTATCACATC 23448 32 100.0 38 ................................ CGGAAAATTACGATAATCTATATAACTGCGATTACATT 23518 32 100.0 36 ................................ CGCATCTTGAATTTTTGCCATCTGCTGACGTATAGC 23586 32 100.0 34 ................................ ACGTGAAACATTAAAAAGGGGCGGATCTAAATCC 23652 32 100.0 35 ................................ ATAAAGTCGGGATGTTATGATTACCCTGCCAATTC 23719 32 100.0 34 ................................ CCATATAAATTGTTTAGATACAATTTTGCTAACT 23785 32 100.0 35 ................................ ATCAACTACACTCCAACTCTCTATATTCATACTTC 23852 32 100.0 35 ................................ CATTCTATGAATTATCAGAAATATTATCCGACAAC 23919 32 100.0 33 ................................ CGTGAATCCAAGCCAATGCCAAAGAAATCCATC 23984 32 100.0 34 ................................ TTTGCGGATATCCGGGACGGAACCGTAGAAATAA 24050 32 100.0 34 ................................ GTCCACAAAGAAAACACTGTATTCTGCACCAAGA 24116 32 100.0 35 ................................ CTCAGATCTCCCATCAAAGCATCGAGGCTTTTTGT 24183 32 100.0 33 ................................ TCATAGAGCTGCAGGCTGATTTTGCGGTAAATG 24248 32 100.0 33 ................................ ATCTCCTTTACTGCATTATACTCCATATGTCGC 24313 32 100.0 36 ................................ AAGTTGCTTATCTGTGTACGTTCTTACAGATACACC 24381 32 100.0 37 ................................ TCATTGCAATAATATCCAAACCAATAACCAGCGTCCT 24450 32 100.0 35 ................................ TCATTGCAGTAATATCCAAACCAATAACCAGCGTC 24517 32 100.0 34 ................................ CGCTTTGGAGTACTTGCGGAAGATTTTGTGCAAT 24583 32 100.0 34 ................................ CGCCTTTAAAGTACTTATTTTGGCATCCGAAGCT 24649 32 100.0 34 ................................ GATTCTTGAGCCAGAATATCTGCGCTGTGACATC 24715 32 100.0 33 ................................ AATTGAGTATTTAATGACGGGTAATGAACCTGT 24780 32 100.0 35 ................................ CGTCTACATATGATTTTGTTACACCACCAGTCCCA 24847 32 100.0 34 ................................ TGCGGAAACTTTTGCCGCCTGTGCGGAAACCTTG 24913 32 100.0 35 ................................ AAATGTTCCGGAGGTATTCAGCTCAAGTTCCAGCT 24980 32 100.0 34 ................................ CCATGTTCAGCAGCATCGGCAGCATGACAGCCAG 25046 32 100.0 35 ................................ ATAGTTTCCATCCCCCTTGAAATCTTTTTATTTTA 25113 32 100.0 35 ................................ ACCTGTGGCGCCAGAGATCGCTTTAACCTGGCTCA 25180 32 100.0 34 ................................ AACCCACATCAATTTCTTACGTTTCTTTTTAGGT 25246 32 100.0 36 ................................ AACTTTATCTGCGGCGGGAGTCCGTGCCAGGATTTC 25314 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ====================================== ================== 66 32 100.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : AAAGTCAGATAAAACGTGGTAGAAACCCGCAGGTGATTTCGGAAATGTCAACCGTATCACCTGGAAAAAAAGAAGAAGGATATTCCTGGAATATAACAGGACAGTTTAAAAAGGGTATTAGGTTAATCTGATATCTAGCGGCTGCAAATCATCTTCTTTGTGAGTTGTGGATTTGTTGGTGAGGTTATTACGTTTTTATATTTGTAGAGAGAAAATTATATAAAAGAAGCAAAAAAACAGTATAATTAATGAGGTCGCGATTTAACAATTGTCTGCGAGTAAAATGGTAATCATTAATCTTATGAAGTAAAAGTATAAGGTGCGAATGTGAAGTGAACATAAATTTCCTGGGAGATTCGCACCAATTAAAAGAGTAAGATATAGTATATAGATAAAAAAATTAGAAATTTATGCGGAATGAATTGTAATATGTACGAGAATAGTATAAAATTTTAGAAGAATAGCATAATTATTTTACATCTAAATTGTGCAATTTTGCC # Right flank : TGCGCTTACAAAACCATAACCAGCTATCCTTAAGTAAGCGTCAAATATATGGTGTATTTCTTTTCCACTAAAAATTAGTGCTAGAGCTTTTAGACTTTTTGAAGTCTATTCTTAAAAATCTAAAATACGGAAGTCTGATATGGAAGAACGTAAGCGATTGTGTCAATATGCATGTCCTTGCCAGTGCGGGAAGAATGGAAGATTGTGTCGTTAAAGAGATGATGGATTTGTTATTGTAAAAATTTATGTGTTGTAATTGACTTTGTAGTATGAAATGGATATAATATGATTAGAATATTACTACCATTACAAAATCAAGGAGGTGCCGTTATGAATATCCGTCCATCTGCAGCAATACGTCAGAATTACAATGAGATTGCGGAGATGTGTAGAAAAACCGCAGAACCGGTTTTCCTTACTAAAAATGGCGAGGGTGATTTGGTTGTTATGGATATTGAAACCTATAATAGACGGGAAAAAATGCTGAAGCTTCGTGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 26800-27886 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYI01000042.1 Eubacterium sp. am_0171 Scaffold_0042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26800 32 100.0 33 ................................ CAATATAATCCCTCTGGGTTATAGATTTCTGTC 26865 32 100.0 34 ................................ AGGATATTCAAGGAACGGAAAATCAGCAGGATAA 26931 32 100.0 35 ................................ AGCAGTACATGGGGCAGGATAAAGGACGCTGCTTC 26998 32 100.0 34 ................................ AAGTTTGTGTCACCGAATAACCCGGGGGTGCCAG 27064 32 100.0 33 ................................ TCTTTTACAAAAACAACCGGTGTCCCGTATCTC 27129 32 100.0 34 ................................ GTTTTGAAGTTTTTATTCAGGATGCGGAAGACGA 27195 32 100.0 33 ................................ CTTTTATTTTCTGAGCTATAATAAAATAGCATC 27260 32 100.0 33 ................................ TGTTCCAGTCATGAGCATGACGCAAGATTTTGA 27325 32 100.0 34 ................................ TGTCCATACTTCTACGTTTGTGATCGTTTTCTTT 27391 32 100.0 35 ................................ ATTATGTAGCATTCCGTAACATTAACGCCAGTCGA 27458 32 100.0 34 ................................ ACGTGAAACATTAAAAAGGACGGATAGAAATCCG 27524 32 100.0 34 ................................ AGAAGGATAAAAACCGCTTAGGCGGTAGAACGGA 27590 32 100.0 35 ................................ CGGTGTTATTTATGTGTAGGCATAAGAGCCAGAAA 27657 32 100.0 34 ................................ CTTTGATGCCAATAGCTAAGCCTTGCCCAAAAAA 27723 32 100.0 34 ................................ CAGTTGGTGCATTTGTCGCAGATGTACCCGCTTG 27789 32 100.0 34 ................................ AACTCTAAATCAATTATATATCAGTCATTAATTG 27855 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.8 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : GGCAGGTGACGTTTTTTCGTCAAACAGAAGTTCCCTATATTGACTGATTACAGCTTGATATAGGGACCTTTTTAAATTTTCATATGGTTTATGAATTAAAAGGTTGTTTTGATGAATAAAAACAGATGGACAGAGCTGTGTGCAAATTATAGGTATTTATAGGTGTATTTTTCGGCGTAACGGCTACGGGGCTGAAGGCTCTGTCATAAAGTTTGTTTATATTTTTCGGCTCCATCAACATTATCTTATTTTGTCAAGGCACTGAGGTTTACCTACTTGGGATGTGAGTAAATGGTAAAATTATTATACGAATTATAAAGTGCGAATGCTAAGTGGACATGAATCTACTGGGAGATTCGCACCAAATAAAAGTATAAATTGTAATATAAAATACAAAAAAATGGGGATTTGTGCGAAAAGAATTGTAATATTTAAGAGAATGGTATAAAATTTTAGGGGAAAAGCATAATTCTCTTATGCATAAATTGTGTGATTTTGCT # Right flank : TTGACCTTTATACTGCAAAGCACAATACTGGACCACGCCACTCCCTGCTCAGCAATAAGGTACAAGATGCCGATATGAAGGCACAAGTTGAGCCATGATAAGAAAAGGAGATCTTCTTTACAGTACTAGCTTTGGATTTATTATGTTCACTATGTTAGAAAAAAGGAGGAACTCAATGAGATATTTAGCGCATATTGCAGAAGATTCAGGAGAACAAACGTTAAAGGAGCACTTGACAAATGTAGCCGATTTATCAGCAGAATTTGCAAAGGCCTTTGGCTGCTATGATTGGGGCTATTGTTGTGGCATGCTGCATGATATTGGAAAATATTCCAAGGAATTTCAGCAACGTTTGGCAGGAAGCGATATACGTGTTGACCATTCTACCGCTGGGGCAAAATTATGCTATGAAATAGGCGGCATGTATGGCTTTCTTAGTTACTGTATAGCGGGGCATCATGCAGGCTTGCCAGATACGGGAGAGGACTCGAATACAAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 37813-41029 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYI01000042.1 Eubacterium sp. am_0171 Scaffold_0042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37813 32 100.0 34 ................................ TCCGTCCCACTCATCCAACAGTGCTTTTACTGTA 37879 32 100.0 34 ................................ CACCAGATGAGGATTTTAAATTAGGGTTGTCTGT 37945 32 100.0 34 ................................ CGATTGTTTGTTGTGGCGCTATGTTTTGGTATAT 38011 32 100.0 35 ................................ CCATTCATAGTTAAACAAATCGCCAGTCTGTATGC 38078 32 100.0 35 ................................ AGTTGTAGAAAAAACCTTCAATGCTGCCAAAAACA 38145 32 100.0 36 ................................ TGCCGTATGCTCTATGATTTTATCGCAACAGTCATG 38213 32 100.0 33 ................................ GTTTTAATGGGTGCCGGATCCTCACTTTTCAGG 38278 32 100.0 34 ................................ AAAACGCCTCTTAAACCAACCGGAACCATATATT 38344 32 100.0 35 ................................ TTCGACCATATCTTCTCTTTTTTTATTTCAAGACC 38411 32 100.0 36 ................................ CTGAACTGTATGTGCACCGTGCCAGCTCATAGTCCA 38479 32 100.0 33 ................................ GGGTCTACTCAGCAGTGGATGGACAAGGATGGA 38544 32 100.0 35 ................................ ATTTTAATATCCATCTGCCACAGCCTCTCCTCTTC 38611 32 100.0 35 ................................ GCAGGTTAAAACAGGAGACGGGCAGGAGGTAAATA 38678 32 100.0 34 ................................ CTTTATCCTGATCGGATACACTGCTGTAACCACA 38744 32 100.0 35 ................................ TTGATTAAGTATTATGGGTCGGGAGGCGGACAGGA 38811 32 100.0 35 ................................ TTCTTTCCCCCCAAGCCTTGCAAAAGGAGATGTGC 38878 32 100.0 33 ................................ CCTGAGCTGTGAACTTTCGGGAAATGGCATATC 38943 32 100.0 33 ................................ CTGCCATCAGGGCCAATATGGCTGTCCTAAACT 39008 32 100.0 34 ................................ ACCGGAACCGTTGCCCTTATACTCCACCAGCACG 39074 32 100.0 34 ................................ TGGTACAAATAGCCGTCTGCCGTGCGGCTGTCAG 39140 32 100.0 35 ................................ TTCTGCAGCGCTTGCACAGTACACTGTTATGCACC 39207 32 100.0 33 ................................ AATTGACATTGTTTACAAATATAGCGGACATAT 39272 32 100.0 34 ................................ CAGTTCCCTTTTCTTCTCTTCGAGCAACATTGGA 39338 32 100.0 35 ................................ ATGCTGCTTGTAATCTCTTCAAGTCGTAAAGCAAC 39405 32 100.0 34 ................................ TTACTTACAGGAATCTTGTTTGTCTGAACTCGGC 39471 32 100.0 36 ................................ TGTGCCAATGTGCCATACAGCTTACAAACTCTCGCC 39539 32 100.0 35 ................................ TTCCATTGTCCGCTGTTATAGAATGGCTTAGCAAA 39606 32 100.0 34 ................................ AGTGCGTTATCCACGCGTATCCATCCGAGACCAT 39672 32 100.0 35 ................................ TCATGATATGTAAAATATATAGTCCCCATGTTTCC 39739 32 100.0 32 ................................ ACAGGTGCTGGGACTTGGCATAGGAACATCAA 39803 32 100.0 35 ................................ CCAGTGTTTCTGTAGACATAAATATATGGGATACA 39870 32 100.0 36 ................................ TATGCACAGCTTAAGAAGGGATCACTGGTTGGCCAC 39938 32 100.0 34 ................................ GCAAAACTGGATATCATCCACATAGTCGTAACAG 40004 32 100.0 36 ................................ AGAAAATGGGTCTTGTAACGACCCCATTGGCGTATC 40072 32 100.0 34 ................................ AATAATTCTGCCAATTAAGTCCGTAATACCCTGC 40138 32 100.0 33 ................................ AAAATTAGGTGCAACAATGGATATTTCCATAAA 40203 32 100.0 33 ................................ TTCCATGAAATCCATTGCGGGCAATGCGAAATC 40268 32 100.0 36 ................................ GATGCAACGGATAGTACAGGTGTGATTAGAGGTACA 40336 32 100.0 34 ................................ ACCGGATAGCGCGGCAAGCCTGATCCGGAAGATG 40402 32 100.0 35 ................................ TCCGGAATCTCATTACGGTCTATACGGTTCCGGGC 40469 32 100.0 34 ................................ TCCGCTGATAAACAGACACTTGGTGCCCAACATA 40535 32 100.0 34 ................................ GATATCTATTTTCAAAGAGAATGAAAACGCCAGT 40601 32 100.0 36 ................................ TATGTTCTCTGATATTTCCGCTAATGGCTTGGTCAC 40669 32 100.0 34 ................................ ATCATATACCAGAGCGTATATATCATTATGAGTT 40735 32 100.0 34 ................................ CGCTGTATTAGACTCTATCCAGCCTTCTGCCACA 40801 32 100.0 34 ................................ AGCAAGAAATTAATAGGAGAAACGGTGGAGAACT 40867 32 100.0 34 ................................ TGTGCTGCTGCATTCCCGTCATAGTCGGTAGCAT 40933 32 81.2 33 ............A......C.CA.T...C... AAAGACCACCACATTTATCCCTTTTTCAAATAT 40998 32 71.9 0 ...........TA.CA..AC...A.AC..... | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 99.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : CATTTATTGCACAGACCGTAGTGAAACATGATGGTTTCAGGCATTCTGTCTCCACTTCGTTTCATGTTATCCGTGCGCTACTGGCGCACGGAACCTTTATCATAGATGAATTTCAATGAGCTAGATACGTAACAGTAATGCTTAAATTATTACCTTACGATAACGGTATAATTATATTACTGTAGGAGAGTGTAGTTCACTTAGGGGCTGCACCATGTAGCCCTTGGGGAATATAATTATCAGTAAACTGTAAAAATATAGAAAATATCAAAAGAAAATTGCTTATGGGAATGTTCTGATAGTATTTATGGTGTTTTAGGTGCGAATGTGAAGTGAACATAAATTCCCCGGGAGATTCGCACCATATAAATCTGTAAAATATTATATTGAGACGAGAAAAAAACGAGTTTGAGCTAAAACAATTGTAATTTCTAGGAAAATGCTATAGAATTTTAGGGGAAATGTATAATTTTCATGTGTAAAAATTGTGCAATTCTGCT # Right flank : TTTTCAATGTAAAGGGATCTGCATGAAACAGGACTATATAAGAAGCATTTTATTTAATTAGGGCAGTCTTAACAAAAAGAACCGTTTTTTCACTAATGTTCTAATTTAATTAGCGATATTATATATAGATCAATAGATCCTGACATAATGTGTAATAGCAGAGAAATAGACTATTGGATTGAAGATTATAGGAGTAAAGCATTTGAGTGTAATATGCTTACGTTAGAGTATCAGAGTTTTGTTTGTAAAACTATTTGAAAAATAAACAAGAATAGTATACGTAAACGTTCAATAGTGGATGCGTCCAATAAAGAAACTGCTCATAAGGATGGCTACACCCAGTTTTTTATTAAAAGCAAGTGATGCGTCAATAATTGTCAGGCATCATTATATAAATGAAAATAAATTAAGCAGGAGGGCCGTTTTGAAAGAAAGATTAAAACAAGTAATGGCAGCAGAGGCGCATGTCATACAAAAGATGGCGGAGGAGATTGATTACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //