Array 1 1525207-1523043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018195.1 Granulibacter bethesdensis strain NIH1.4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1525206 29 100.0 32 ............................. GCGGCTGATGTCAGGATGGCTGATATTTTTCC 1525145 29 96.6 32 ............................A TGCAGGCGATTGATCAGCACTCGGTTGTGGTC 1525084 29 100.0 32 ............................. CGCCGCTGATCATATATCGCAGCGCGGTCCAG 1525023 29 100.0 32 ............................. ATCGCTCGATGAACCGCCGTTCTTGGCTTCGA 1524962 29 100.0 32 ............................. TCTGCGCAGCCACCCGGAACCGTATTCTGAAA 1524901 29 100.0 32 ............................. GTGCCGAGGCAGGTCGTGAGACCGGTTACGGT 1524840 29 100.0 32 ............................. CCACCGCGCGCCAGATCGAGCAGCTGCGCATT 1524779 29 100.0 32 ............................. GTGGAAATAGGCCGTATGCGGGTAGGAAAACG 1524718 29 100.0 32 ............................. GCCAGCGAGGCACATGCGCGCGGCTTCGCGGT 1524657 29 100.0 32 ............................. GCCGCCACAATCGGTGCTGGCAGCAGCTCAGG 1524596 29 96.6 32 ............................T CTCTCTCCTGCTGATCTGGGTTCGATGCTACG 1524535 29 100.0 32 ............................. ATGCTGCTCCTGGATAGCGGATGGCCGCCTCG 1524474 29 100.0 32 ............................. GTAGAAATGCGATCTACATTCATCGGCTCAAG 1524413 29 100.0 32 ............................. AAAAATTCGAATTCTTCCTCGTCGCAGCAGGA 1524352 29 100.0 32 ............................. CGAAAACCCATGACGGGATTTTCGCAAAAATA 1524291 29 100.0 32 ............................. CCCGCGTTGCGCTCCTGCGCCATGCGCTGGCA 1524230 29 100.0 32 ............................. TCGCTGACTAATGGGAAAAAAAATAGAGTCTC 1524169 29 100.0 32 ............................. ACCTCTGTATCTAAGAAAGAAAGGGGAGCGCC 1524108 29 100.0 32 ............................. GTCCAGCACACTCAGCGCCAGCGCCCTGTATC 1524047 29 100.0 32 ............................. GTGCGGCCGTGATAAAAGCGCGCGTCGCGAGT 1523986 29 100.0 32 ............................. GCATCTTCTGTCCTGGATGATCGGTCGGCGTT 1523925 29 100.0 32 ............................. ACGCTCCGGCGTTATTGGTGATCCCACCGTTC 1523864 29 100.0 32 ............................. CCGCTACAGGGCGCTTCCCACCGAGCATTTTT 1523803 29 100.0 32 ............................. CGCCCATCTGAACATTTTACGAATGCGTGGAG 1523742 29 100.0 32 ............................. CAGTCGGTGACTGCTGATACAGCGACTGCGAT 1523681 29 100.0 32 ............................. GGCTGGTCGGTCCATGAAATTATTTGGCAAAT 1523620 29 100.0 32 ............................. ATTTCCGCCATTTATTTGCCTTAGTCGGCGCT 1523559 29 100.0 32 ............................. CCGATGCGATCATGCGACGTGTCAGCGATCAG 1523498 29 100.0 32 ............................. TCACTTAAATAGGGAAAATGCTGAGAGGTTGA 1523437 29 100.0 32 ............................. GATTTCGAGCCGCTCTACGCTGAACCCAGCGT 1523376 29 100.0 32 ............................. GCGCTGGGCGAGATACTGGTGTTGCGTGCGCC 1523315 29 100.0 32 ............................. ATCATCGCCCTCGATACCGGCGTTACCACAGG 1523254 29 100.0 32 ............................. GAATCACGAGGGAGCACAATATGCACACTGAC 1523193 29 100.0 32 ............................. ATAACGCCAAACCCGGGCTCCCTTGAGCAACT 1523132 29 100.0 32 ............................. GCTGATATTTGGCTATTCTCAGGAGTATCGCC 1523071 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCTGCTGCGGACATTCCACGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTCGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : ATTTGCCTGTATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCATTGTTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGTTCTCCGCTTGTGCCGCGTAACGACCCCACACTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGCCAGGAAAGGCGGCCTTACAGCAGGGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACTTTCTTTGAAATGCTGGGTAATTTCTCCTTTGGCGATTACTTCAAGGAACAGGCGATCACCCATGCCTGGAACGTCGTTACGCGCGAGTTCGGTCTGCCGGCCGAAAAGCTGCTGGTCACGGTCTATCAGGATGATGACGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1534729-1534152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018195.1 Granulibacter bethesdensis strain NIH1.4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1534728 28 100.0 33 ............................ CCCGGGATACTGCCGGGGTCTACGCCTCTGACA 1534667 28 100.0 33 ............................ CTAAAACGTCTCGGCCTGCGCGGCCCTCAGTCA 1534606 28 100.0 33 ............................ TGCCATGCACCGCGCGGCGTGAGAGACGCGCTG 1534545 28 100.0 33 ............................ CAGCGCGGTCGCTTTTGTGACCGCAGCGCCCGC 1534484 28 100.0 33 ............................ TCCTCTGTCCGTGTGACACGCCTGACACGGCGG 1534423 28 100.0 33 ............................ AGCGTCCCGCGCGCTCCCTATAAACTATAGCAA 1534362 28 100.0 33 ............................ CCCCGGCTGCACGAGCAAAATTTGTCGCGTCAA 1534301 28 100.0 33 ............................ CGAGTTGCGCCCGGTTTCCATCGTCTCGGCCGC 1534240 28 100.0 33 ............................ TGGATCTGTTGATGAAGCGCGTGGGATAGCTGC 1534179 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGACGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGACATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAATATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGGCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCCAATCAGCTTTCGGAGAAAGGTCTACTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTTTTATATTGCCGTAATTTTTACCTATCCATGAGATTAAACATCTCCGGACAGTTACGTTGATGGAGCTGCGTAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGTCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1835442-1832607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018195.1 Granulibacter bethesdensis strain NIH1.4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1835441 28 100.0 33 ............................ TCGCTGGGCATCCGTGCGCTGCGGCGTGACATG 1835380 28 100.0 33 ............................ CCGTCGTTCCTAGGGCGTTATTTATTTGCGTCG 1835319 28 100.0 33 ............................ TTCGATTGGTTTCGCGCTGCCCCCACCGAATGC 1835258 28 100.0 33 ............................ CGCCAGCGGGCGTTGGACGATTGTGCCCCACGT 1835197 28 100.0 33 ............................ CCCTGTGATCGTAGTGAACCAACGACCGTTGGG 1835136 28 100.0 33 ............................ CGACACCCTCTACGTCCGTCAGGTATTTTTCCG 1835075 28 100.0 33 ............................ CGTTTCTAGCTGACGCGCACGATTTGTCTGCCG 1835014 28 100.0 33 ............................ CAGCGGCAAAGACATGGCGCAGTTTTGCGGGAA 1834953 28 100.0 33 ............................ GCTCCGTCACCTCCGCATTAGGGGCTTCATCCG 1834892 28 100.0 33 ............................ CGAGCTTTCTGACCTGCCGCGCACTTAGGAGTG 1834831 28 100.0 33 ............................ GTCATGATAGTTGATTTCCCGTTCCATATGCAG 1834770 28 100.0 33 ............................ TCCGGCCGGTCCGGCCGAGTATCGTGCGATCGG 1834709 28 100.0 33 ............................ CGACCTGTATTGCGACGTTGCGCTCCAATACAG 1834648 28 100.0 34 ............................ TTTGACCGACCGTTTCCGAGCGCCCAAGGCAGCG 1834586 28 100.0 33 ............................ TTGTGCCCCACGTCCCTTGGCTTTTTTTCTGCT 1834525 28 100.0 33 ............................ CTGCTGGCGTAACGGGCACTCAGACAGAAACGC 1834464 28 100.0 33 ............................ CGACGATAGCTCCGATACGTACGCACCGTTCCA 1834403 28 100.0 33 ............................ TGTGTGCGTCCAACACGGCGGAATTGGCCGAAC 1834342 28 100.0 33 ............................ TGATTGATGAATAAAATAGACGGGGGCCTAATC 1834281 28 100.0 33 ............................ CTGGCAAACCGGGCAGCCAAGGCAGTGGTGAGC 1834220 28 100.0 33 ............................ CGGGCCGAGCTGCCCTGGCGTTCGGACGACAGA 1834159 28 100.0 33 ............................ CGCGGTGGTGAACGCCAGCCTGAATCCACTCGT 1834098 28 100.0 33 ............................ CTGCGCGGTCACCATGGCGCGGCACAGATCGTA 1834037 28 100.0 33 ............................ GCGATCCGGGCTGCGGAGCCCAAGGAGAAGATG 1833976 28 100.0 33 ............................ CCGATATCGCCGGATGGGCCGGGTGCATCATCC 1833915 28 100.0 33 ............................ GTGGGCAGCTATGCTAGCATCCATGGTCAGCCC 1833854 28 100.0 33 ............................ TCGGCACGACCTGCTGATCGACCCCGCCATCCT 1833793 28 100.0 33 ............................ CCGTAGCGCGTGAGACTACCAGCGATACAGAGC 1833732 28 100.0 33 ............................ CCACCCACGCTTTTCGAGCAAAAATAGCCCGGG 1833671 28 100.0 33 ............................ CTTCGTCTTGCGCACTCCACTCCCACCCCGGGA 1833610 28 100.0 33 ............................ TCATCGATCCGACCCGCCTTGTCGTGATCTACG 1833549 28 100.0 33 ............................ CGGTCTCATGCAGACGGTGCCGGATGCGCCTGA 1833488 28 100.0 33 ............................ CAATGTCGTCCCGAATGCAAAAATGGTGGACGA 1833427 28 100.0 33 ............................ CCACGGGATCAAAAGAATAACTTTCGCCTAAAT 1833366 28 100.0 33 ............................ CTGTACTGGGAGCCGATCAGGGCCGATCAACTG 1833305 28 100.0 33 ............................ CATTGTTCGCAGAGATGAAGATGGTCGGCTACA 1833244 28 100.0 33 ............................ TCCCCGTGCCGTTCGCCATCGACTGCGCCAGCA 1833183 28 100.0 33 ............................ CGATATCTGAAAAGCGGGGCCGCTGATTTGCGG 1833122 28 100.0 33 ............................ CGACTGGTCGCCGGGAGAGGTTGGGCACGCATT 1833061 28 100.0 33 ............................ CTCGCGCGGTCGGCACCATCCGCGCGCGCTGGC 1833000 28 100.0 33 ............................ CGAATCTCTGATAGGTTTCGTCTGTCTCAAGAT 1832939 28 100.0 33 ............................ TGTATAGGACTGCGAGCCATCAATCAGGAATGA 1832878 28 100.0 33 ............................ TGCCCCCTCACTAGGGGTTGCCGCACTGTCGGC 1832817 28 100.0 33 ............................ TTGGTGTCATGCAGGACGGCGATATCGGTCCCA 1832756 28 100.0 33 ............................ CCTAAGGCGCGCCCGCGAGGAAGGGGAGGGGTG 1832695 28 100.0 33 ............................ TCCGTGCCGTTGAAATGCACCGCCGGAAAGCGG 1832634 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 47 28 100.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ATTGCTGCGTCCGGCCTGATGTTTGAAGAAAAATCCCTTTTCGGTCCGGCTTTCAAGCCATCTGGGTGCTCTCGGTAATGAAAGTGGAAAGGTCTTTCCGCACAAAATCGATTTTGATGTCAGGAGGGTGGAGCAGATTATTTAATATATCCTTGCGCAGCCTGCGCTTCATGCAGTTCGTCCGGGCTTTGTTCCATCAATGATTGCCAAGCATGTTCTGGATGTTCCGCCAACGGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCCTTTTTAATCCTGCACCCGTTGCAGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGGAGCAGGGTTGGTATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGACATTATCGATGCCGGTGGAGTACTGCTGCTTCAGAGAAGTTAATTTCTGAAACATTGTGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : TCACTCATCATAATGGATCGCTACTCTCCCGCCGGGGGTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCCATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGACCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGGCAGACGGTCTCCATGCAGCAACTGGTGCTGATCGTCATCAGGGAGTTGCAGGAGCGTATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 1917601-1919275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018195.1 Granulibacter bethesdensis strain NIH1.4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1917601 28 100.0 33 ............................ CTTTCCACCAGGCCGCCAGAGGGCGTTACCCCC 1917662 28 100.0 33 ............................ CATTGCTCCGGCATCCTGTTCCGCGGTAATTGC 1917723 28 100.0 33 ............................ TTGTCTGCTAATTTGGCGGATGAGTTTATTAAG 1917784 28 100.0 33 ............................ CTGCGCATATCTATTAAATCCTGCTGCTGATTA 1917845 28 100.0 33 ............................ CCCCGCCGGGTTTTCCGACAGCAGTCCACGGGA 1917906 28 100.0 33 ............................ CTGTGAACGTTTTTAGATTTTCTGCCTCGGCCA 1917967 28 100.0 33 ............................ CGAGACCGTGCCGCGACGACACGCCACAATGCC 1918028 28 100.0 33 ............................ CGCGGCTGGCCGTCTCTATCGCCTGGTGGTCAA 1918089 28 100.0 33 ............................ GAGTTTCATCGGCTTCAGCGGCCCGCATTTCGC 1918150 28 100.0 33 ............................ GTGGCTGCCACTTCGGCTGACCGCACATTGAGC 1918211 28 100.0 33 ............................ CCCCACACGTTCGCGCCCGCCACGCCGTAGACA 1918272 28 100.0 33 ............................ TCGCTGCGCTCATAGTGAGCGACAGCGCCTGTT 1918333 28 100.0 33 ............................ CGTCCGAACAGACGCTGCGTCAAACGCCAGTGT 1918394 28 100.0 33 ............................ CTGGATATCCTCGGCCGAGATCGCATGCTCTTC 1918455 28 100.0 33 ............................ ATTCCCGCTGTGGTGGACGCCGTTGTTTCTCTG 1918516 28 100.0 33 ............................ GATCGCCATTCAATGGCCGCCAGAAATAGGCCC 1918577 28 100.0 33 ............................ CCATGCAGAATGATGCACCTATGGAGGCCCTCG 1918638 28 100.0 33 ............................ TTACCGCCCCTGTTCCAGTACTGTTCTGTATCG 1918699 28 100.0 33 ............................ TTTATCAAAATCGGTGCGGAGCTTCGGAAGCGC 1918760 28 100.0 33 ............................ CCGGTTCCCCCGGATTTTTGCCATTTTTGCATG 1918821 28 100.0 33 ............................ GCCAGAGAAAAATCTCTGTCTTTAAAAAGAGCA 1918882 28 100.0 33 ............................ TGGTCTTCAGCTGGCTGGGGCAGTGCTACGATC 1918943 28 100.0 33 ............................ TTTTTCAATCGCGCCCGACCTGCCCCTGTAAAG 1919004 28 100.0 33 ............................ CTGCGTCTGCTCACTCTGCGCGTTCTGGCCCAA 1919065 28 100.0 33 ............................ CACCACGCGCGTTTTGCCGCCCTTGCCGAACAC 1919126 28 100.0 33 ............................ CGACCCGAATATAGTTCTCACTCAGTTACATCA 1919187 28 100.0 33 ............................ CTGATCGCTGGAAAGTCAGCGCCGCACCGTCGA 1919248 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGTCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAACGCTCCGTCATTCCAAAAATGATCGAGCGACTCAAACAACTTTTCGAAAAAGAAACGGAGGCCATCCCATTTCTCGAGGATGATGAATGATGCCAGCCACTCTGGTCATTACAAGAGATGTGGAAGCACGCTATCGCGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCCCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCTATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACCCTTGGCGACGCTCCCAAGGAGATTGTCGATGCCGACGGGGTGCTGCTCGTTCGGAAAAGTTAATTTTAGAAACATATCGTTCTTTAATATTGTCAATAAGTATCAATGTGTTATAGGTAAGA # Right flank : TCTCGGCAATGTCTGCGAGATGGCGGAGAGGGTGGGATTCGAACCCACGGTACCCTTTAGGGGCACAACGGTTTTCGAGACCGTCACCTTCGGCCACTCGGTCACCTCTCCGTTCGGGGTCTCTTAGAGCAGGCGAAAGCCCGCGCCAAGAGGCTGTAGCAGAAAGATGCCCCCTTACCTTCCGGCCCGGTTCCATCCAGCCCGAGCCCGAATCGAAGCCACGGCAAGCGAGAAGCCCCTATACCCGCTGAGCAAACACCTCCTTCGGGCTGCCGGCACGGCAGATATTTCATGAAAATGGGAGCCATGCCGCAAGGAATGTTTGACTTGTGGCGTATGACCGGTATAACCCGCGCCTCTCGGCCGCCGTGCCTCCCGCTTGTCGGGGTGTTCGGAGGCCGCTCGGCGTTGACGGGATGGCTCCGTCGTCGCGGAGCCAGCATTTGGGACCAGAAGCGATGTTCGCAGTTATCCGCACTGGCGGAAAGCAATACCGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //