Array 1 59253-58429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000007.1 Fusobacterium necrophorum strain DD5 JD14_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 59252 30 76.7 36 .CA...C.T..C....GG............ AGAAGATAGAGAAACATTCTCATCATTACTATCAAA A [59237] 59185 30 100.0 37 .............................. TTCAACCAATTCAATTTTCCAATTTTTTTGATCGATA 59118 30 100.0 35 .............................. TTTACCTGGTTAATAATATTTTCTAAAATATTTTT 59053 30 100.0 36 .............................. GGAATAAGATTTAATATTATGGTCAATTCCGATATT 58987 30 100.0 36 .............................. TAAATAATACTTCAATATTAAGTTTCTTGCATATTT 58921 30 100.0 37 .............................. AATCTTGCTATTTTAAAGTTTCCACCCAACACATCTA 58854 30 100.0 35 .............................. TTTGGAGATTTTAAAGTATTAGATCGAGAATATAA 58789 30 100.0 36 .............................. AAAATCAGAATAATAGCAAAAACAATGTTGATGAAA 58723 30 100.0 35 .............................. GTCAAAAATAAGAAATTCATCAAAAATTCCTGCAA 58658 30 100.0 36 .............................. CTGCTTTTCTGTATTTATAATTTCATTGGAAATTAT 58592 30 100.0 37 .............................. AATGGAAGGACGATTTTATTAGAGAACATGCAAGGAA 58525 30 100.0 37 .............................. AACGACAGCATCGTATCTCGCTGCAAGCTGTAAAACT 58458 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : AACAAAAAAGACTACTATATAATTGAGTGTAAACGAATTGATGGAAGTTCGAGTCTAAATAAAAAATATATTAATGAAGGAGTTAGTCGTTTTGTAGATGAACCACCTAAATATCCATCTCATCACAATAAAAATATTATGATCGGATTTGTTGTGAAAAATATTGATATTCCTAATAATTCAGTAGAACTTTCTAAAATAAACAAAAATAAATTTGGGGCAATTAGTCAAGGGGATTTCTTTTTAGTAAAAAATGAAATAAATGAAGGTTTGCATGAATATACAAGCAACTATACTTTATCAAATAAGTCACTACAATTACTTCATCTCTTTTTTGACTTTTCATCCATAATAAAGTAGTTTTGATTAAATATTAAATTGATGAATTAAAATAATTAATAAATAGATCAAGTGAACTTGTTTTATATAAATATAGATAAGATGGTTAAGAGTGGATAGATTTGTCTACTCTTTTTCATGTTATGGTCAAAAAAATGTAT # Right flank : TTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 2807-4559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000070.1 Fusobacterium necrophorum strain DD5 JD14_69, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2807 30 100.0 35 .............................. TCTAATTGTTGAGCATTAAAAACACTATAAGTTTT 2872 30 100.0 36 .............................. CAAAACAGGGAACGAGTGTTTATTATCACACATCTT 2938 30 100.0 37 .............................. CTTTTCTTGTCCCAAACATAGCTATAGACTTCCTCAA 3005 30 100.0 38 .............................. TTTGTTTTCGTTGATAGAAAAACCAGTTTCGTTCACAA 3073 30 100.0 36 .............................. GAGAGCCAATTGGATATACTTGTGAGAATGAAAACA 3139 30 100.0 36 .............................. CTGTAAGACATCGGTTTCGAGGCTTTGAAAAAGTAT 3205 30 100.0 36 .............................. CGAAAGAGGTTGCGGAAGCTCATATGTATCAAGCAA 3271 30 100.0 36 .............................. TCCCTTGCTTCATCGTAGGGAATATGTAATAAACCA 3337 30 100.0 37 .............................. GCGAGTTTCTGAATTTGAATAAAGAGGTCATAAACAA 3404 30 100.0 35 .............................. ATTATAGGAGACACATGTGTCTTCTATATTCTTCG 3469 30 100.0 37 .............................. TTAAAAAAATTCATATTTCCAGATTCAGAATAAATTA 3536 30 100.0 35 .............................. GGAAAGAAACGAAATTGGACGAATTATTTATGTAA 3601 30 100.0 36 .............................. CCATAAAATCAAGGAAAATGCCATTACATTTCAACA 3667 30 100.0 35 .............................. TCTTTTTTTATTTCTTCTTTAAAATTAAAATCATA 3732 30 100.0 37 .............................. AATGACAGAAGCAGAAAAATTAAACATTTCTATGAAT 3799 30 100.0 37 .............................. GTTTTACTGACCACTAGTGGTCGCTTTTTCTGACCAC 3866 30 100.0 36 .............................. GAAAAGAGAGAGAAGCAATGCTACAGGCAAATGAAG 3932 30 100.0 36 .............................. TTGGCAATTTTGATTTTACCTTTGTGTTACAACATG 3998 30 100.0 37 .............................. GCTCTTATCCGGTCATCCACTCCTGCAGCTTCCTGCA 4065 30 100.0 36 .............................. TTTTTCCCGTTCTAATTTTACTTGAAATTTAGAAAG 4131 30 100.0 36 .............................. AGACCGTTATTGAAAGACTTGAAGACGGTCAAGAGG 4197 30 100.0 36 .............................. AATTGCTTCCCTCTTGTCACTTTCTACAACAAGAGT 4263 30 100.0 35 .............................. TTACACAATTTTCTTCATCCTGATTTCTTTTAAAA 4328 30 100.0 37 .............................. AGTACGTCAAGTTTTAAAGGAGTGTGATTTTTTTATA 4395 30 100.0 37 .............................. TTTTATTCCACTGAAAGATATGTTTGAATTTTTAGAA 4462 30 100.0 38 .............................. GTAGGTAGCAAATGTGTTAATGTAATACTATTTACGAT 4530 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 36 ATTTACATTTCACTCTGTTTCTATTATAAG # Left flank : GCATATAGATTCCCTGATCGGTAAAAGCATGAGGATTGTACTTAATATTACTACCTCTTCCTGCACTCTTGTTCAAGGTCACATTTTGTGACCTTGAAAGTTTAGAGACTTCCTCGTCAGTTAATCGGAACATAAAATCTTCATCAAATTTTTCAATATTCCTTTTTACTTGCTGATTAAAAGCCTTTGTTTCATATCCATAGATTTCGGCTAATTCAAAGTCAAGCATGACCTTTTGTCCCCTAATAATATAAATCTTTTTCTCAAGGGATTCCTGACTTACAATCATCATTTCATCTTTTTTATCCATTTCTTTATTCTCTTATTCAAAGTTCCAAATAGTTCATTTCATAGACTATATTGTATCCTAAATGTAATATCATTCATCATAAAAACCTTTGAAAAATTAAAAACCTTATAAGTATCCCTATCAAACCACAAGACCACTCTGTTTCTATTATAAGCTTTAATCGCAAGAACGATTGATGTTGTGATTACTA # Right flank : GCCGCATAAGATAAAGTCTTTTATTTTAGCTGATTTTCACTCCCAAATTTGTCGACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAATAAAAAATGTCAAAAATCATCTCTAGTCCTTTATTAGAAGTAGTTTGTCGACCTCTTAGGAAATTTACATTATTGGGGGTCGACAAGCAAAAAAATACCCTCATATTATTTCATTTCAATATACTTTTTTATCCTTAACTCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTGATAACTTAAAACATTTCTAGATGCATACAAAGCCTATTACAAATGAAACTCCTTTATTTTTTGATAAGAATTTATTGTTATCTTTTTCTCTATTTTCACTCCTTTAAGTAAGGTAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCATGCTGACGAATTTTTTCCTCTTTTGAAATACTTTCTTCTCCCCTACCGTTTCCGGTCTGATATGTAAAATCAATTGCACTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACTCTGTTTCTATTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 37345-38302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000021.1 Fusobacterium necrophorum strain DD5 JD14_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37345 30 100.0 37 .............................. TTGACTATCAAGAAAAAGTTCTGGACTCTTTCTATAT 37412 30 100.0 38 .............................. AAGGAAGAGTACCCTCACGGGTACCGAGGGTTCAAATC 37480 30 100.0 36 .............................. TCATGATTTTGGCTTTTATTTCTTTAGGGAAATATT 37546 30 100.0 36 .............................. AAGAAAGGCTCCACTAGGATATAAGTATCTTTGCTA 37612 30 100.0 36 .............................. AGACAAACTGGTATAATCTCATTCGCATTGTCGTCA 37678 30 100.0 37 .............................. GAAGAGGGTATTATTATTGTTAGAGACGTGTGGACAA 37745 30 100.0 36 .............................. ACTAAAGAGGAAAAAGATAGAGCAGAGCAAGCAACA 37811 30 100.0 36 .............................. CAATTTCTTGATCTTCTTGAGAGATTCCCAAAGCAT 37877 30 100.0 37 .............................. TATGATAACCCGGGACGGATATGACACGGAAGCTCGT 37944 30 100.0 36 .............................. TTTTAATTGCAGCTTTTTTTCATTTATTTCTAATTC 38010 30 100.0 36 .............................. GAAGCCCTGCTTGATAACGATGTTGAGTATTTGTCA 38076 30 100.0 36 .............................. CCTGAAAAATATAAAGTAATTCATAAGAACTCTCAG 38142 30 100.0 35 .............................. TCTTCCATGCAGTTGTCGTCTAAGTCGATATCGAC 38207 30 100.0 36 .............................. TAGTATGTTTCTGGATACTGTTTTGCAATTCCTTTC 38273 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : TGAAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACAATGGTAGCAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAATAGAAAGGCTTAATATTTATGCTTTTTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGTCTATTATAAATATTTCAAAATATTAGAGTAATAGTAACACTA # Right flank : ATTGAAAATTTTAAAAGAAATAAGGTCTTCTTCAATTAGACTAAATCCCATTTTAATTGTGTTATTCAGATATTTTACTTAGCATTTTTTCGCTATTTTAGCACTTGTTTTTTTATTTTCTAAACTTATAAATCTTCATGCTTTTTTCTTGTATTAAGAATAATGAGAGAATAAGAAGAATTTATTTAGAAGAAGTTTTTCTGGAATACATTTAAAAAATATATTATAGAAAGGATTAAATGGAAGATTTAAAATTAAAGAATATAGAAATAAAAAAGGAGTTGATGTAATTGAATAAAAAGAAGTTCCTAAGTAATGTAATAAAAAGCTTAAATAAACAACCTGTTTTATTTGTCGGGTCAGGAATTCCAAAAAGATATTTTAACTTAGAAAATTGGGAAGAACTTTTGAAAAAATTCATAGCAGAATTTTCTAAGGATGAATTTAAATATACTAAGTATTTATCAAAAGTAAAAGAGAAAGATTATTATGGAAAACAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6701-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000037.1 Fusobacterium necrophorum strain DD5 JD14_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6700 30 100.0 37 .............................. AAGGACAGTTGCGATAAGCAACTATAGGGGTCAAGGG 6633 30 100.0 37 .............................. CTATCAATAACTCTTTGTTTTTCGTTTGAGTATAAAT 6566 30 100.0 36 .............................. GTAGTAAAAAATAGCTTAACAACGAATAACGATAGA 6500 30 100.0 37 .............................. TTCTTATTAAGAGTAAGAAACACAACAACAGGAGCTT 6433 30 100.0 35 .............................. AAGATAGCTGTTATAATCGCTACTTTGTCATCTAA 6368 30 100.0 36 .............................. CTGTTCAAATTATTTCGTCGATTACTATCCATGATT 6302 30 100.0 36 .............................. TAATGACTTCCGAAAAATCGGGATTGATAGGTATAA 6236 30 100.0 35 .............................. TTATAAAAGCAGGAGATACATGCAGAGCCTTTGCT 6171 30 100.0 37 .............................. TTCCATCGAATTGCTCAGCACATGAGAGAGGATCCCA 6104 30 100.0 35 .............................. AAATCATCAGTACTTCCCCACTGATATGAAATTAT 6039 30 100.0 35 .............................. TACCATTCAATCGTACATGAAAGGGGCTATTGAGA 5974 30 100.0 36 .............................. GTACATGATTGTGGTTGTCTTTATAATGTTTCGTTG 5908 30 100.0 37 .............................. CTACTCGTTCTTCCATGTCAATCTGCTGTAGAATTTG 5841 30 100.0 38 .............................. TTTTATTCAAAAATACTGTTAAAATATGCTTTGTCCTT 5773 30 100.0 37 .............................. GCATATGCTGCTGCCTTGTATTCTCTATTCTCTGTTT 5706 30 100.0 37 .............................. ATGTGCCTGCGGAGCTTGTTGGAGGGGGAGAAAGCAC 5639 30 100.0 38 .............................. ATATAAATATCGTCTTTTTTTACTTCACTACCTGTTTG 5571 30 100.0 35 .............................. TGATAAAAAAGCAAATTTCCATTCTCATCTTTTTC 5506 30 100.0 38 .............................. ATTGCAGTTGTATTGATATTTGCTTTATCTATTACTTA 5438 30 100.0 37 .............................. GAAGATGAAAGATATATATGAGGGAGATATTGTTCTA 5371 30 100.0 36 .............................. TAATCCTTAGCAATTACTGTCATAGATAGTAAATCT 5305 30 100.0 35 .............................. GTATAATTCAATATTAAAATAGCTTTCGCTATCTT 5240 30 100.0 37 .............................. GAGGTTTACGAAAACATTGACATAGATTTAGATGACA 5173 30 100.0 37 .............................. ATTTTTAATAAAAGGAGCTACTGATTGAAGTTAAATT 5106 30 100.0 35 .............................. TTAGAAATGCTGACATTTCCTCCTGCTACGTTTCC 5041 30 100.0 37 .............................. AAAAATTAAAACAAAGAGAAGAAAATATGAGATAGAT 4974 30 100.0 37 .............................. TTGTTTCGATAAGATCTGCCTTGGTCGGTGTTTGTTC 4907 30 100.0 36 .............................. TTTATGATTGAAAACCATTGTCCTCATTGTGGCTGG 4841 30 100.0 38 .............................. GGAGTATTCTTCCTTTGTTGCAGGATTTTCCGCGATAA 4773 30 100.0 38 .............................. CAAGGGGCAATCACATTGGAAGATATAGAACTTTTTAC 4705 30 100.0 37 .............................. AAATCACTTTTACAACTCGACCGTTTATTTTGACGTT 4638 30 100.0 36 .............................. TCGCTTGGTCTTGTCGAATCGCCATCGTGAATTGGC 4572 30 100.0 36 .............................. TAAACAACAATCGGTCAAGAAATACACAAGACATGA 4506 30 100.0 37 .............................. CGGAGAACATGGATTGGAAATTAAGAATTTACCATTC 4439 30 100.0 35 .............................. ATTTGTTAGAAATGCAGAAGCTACATTTGTTTTCG 4374 30 100.0 37 .............................. TGATAGACGGATACAATGAAGTAACTTCCACATCTGT 4307 30 100.0 37 .............................. TATGAACCCTATTAAAGTTGCATTGCACCCTAAATCG 4240 30 100.0 38 .............................. TTCACTTCATAAGCTTTCATCTCATCTGTTAAGCCTGT 4172 30 100.0 35 .............................. ATGTTCCAAGCAAGTCATTTCGTCTTCTTTTGAGA 4107 30 100.0 37 .............................. ATCAAATATGTATCTATCCCTAAAATAGATGGAAACA 4040 30 100.0 38 .............................. TTCGTAATGATAATCAATCCAATCATGACTTCCAGCTC 3972 30 100.0 37 .............................. AATAAATATTATATAATGCTATCGTGGAAGAAGCAGG 3905 30 100.0 37 .............................. TTCTTTCTCCATCCGCTAAAATTATCACCTTATCAAA 3838 30 100.0 37 .............................. ATTGAAAAAATAATCAAGCATTTTTTTATTTTTATAT 3771 30 100.0 35 .............................. GCTACGGATTAGAATTTGCTTCTGATGAATTAAAA 3706 30 100.0 38 .............................. TTGTTACTATCTTTGGTTCTTCTAGTGTTTTAAAGTAG 3638 30 100.0 36 .............................. TAGAAATTAAAGAAAATTTTAAGAATAAAGGACGTT 3572 30 100.0 36 .............................. ATCTTTCTTTTTCACTCTCCGGAGTATTCAATCCTT 3506 30 100.0 36 .............................. ACTTTTCTTGGTTGTCCACTTGGTTGTCCACTTGGT 3440 30 100.0 37 .............................. TGTTCAAAAATTCTAAATTTATCTCCTTTTTTTGTGT 3373 30 100.0 36 .............................. GAAGGAAGTGCAGAAGAAGTTCTGGAAGGAGAAGTC 3307 30 100.0 37 .............................. AAATTTTTGTTAAATGCATTATTTTTTGAAAAACGGT 3240 30 100.0 36 .............................. TCTGTTAAATTGTTAATTTCAAAGAATTTTTTATTT 3174 30 100.0 37 .............................. GTAATAAAAAAGACTGGACCACGCCAAAAAACTTTTT 3107 30 100.0 37 .............................. AACACCCACTCTAATAAACGAATTCCTACCTCAACGC 3040 30 100.0 38 .............................. AAGTATCTTTCTCATATCTTGAGTAAAATTCTATATTT 2972 30 100.0 36 .............................. CCAAATAAGACTTTATCAATCTGTTTTTTTGCAACG 2906 30 100.0 38 .............................. TTTTTTTTAAGACATTAGAATAATGAACATCAGTATTT 2838 30 100.0 36 .............................. TTTTTATCTATTTTTACAGTAATTTCATACCTCCCG 2772 30 100.0 37 .............................. GCGTATACAGGGAATAGACAAAGTTCTTTGAACAAAG 2705 30 100.0 37 .............................. AGCAAATTTTGAGTTAGCTTCTCTTTTTTCCAGTCGT 2638 30 100.0 36 .............................. GGCTTGGAAGAAATCGTCAAAGGGATGAAAGAGTTC 2572 30 100.0 37 .............................. CAAAATCTTGTATGATAACTCGGTTCTTTTTCAGATT 2505 30 100.0 36 .............................. CATATTCATTTACAATTCTTATATATGTTCGGAGAA 2439 30 100.0 36 .............................. AAATTATGAGTGAAATACTAGAAGTACCGGTTTTAG 2373 30 100.0 36 .............................. TCTGTTCCTATGACGCTACATATTAGCAATACTTTA 2307 30 100.0 36 .............................. ATCAAAGAATTCGAGGCAAAATGTAAAGAATTGATT 2241 30 100.0 36 .............................. TATTTCTCAATCAACCCTGCTTTCTTTGCTGTGTTA 2175 30 100.0 35 .............................. GAAAAGGTTTTAATACTTACTTGTGGAGTAGATAT 2110 30 100.0 36 .............................. AAAGGAAAGACAGAGTTGGATGTCATTTCCTTAAAT 2044 30 100.0 35 .............................. GCTTCGTCATTGTCCATGATTAGAATAATTTTCTT 1979 30 100.0 38 .............................. TTGTTTGAAAAAGCATTGGCATATATTGCAGGGTATGG 1911 30 100.0 37 .............................. AAAGATACAGAGAAAACAATTAAACGATTTTTTATAG 1844 30 100.0 37 .............................. GTTGCTGAATCAATAGATTTTAAAAGTTTTAAAATTT 1777 30 100.0 36 .............................. CCTTGTCCGTGAATTGCTAAATGCTTTGCGGTTTCT 1711 30 100.0 36 .............................. GAACAAGAATGTTTAAGTTAAATTTAACAGAATATG 1645 30 100.0 36 .............................. TTATATTCTAAAGAAAGTATAGAAGGAGGAGTAGAA 1579 30 100.0 36 .............................. AATAAAAAATAAAAAGAAGAGAAGTGACACATGTGT 1513 30 100.0 36 .............................. TTTAAAATATTATCTTGGCTAAAATTTGAAAAAAAA 1447 30 100.0 36 .............................. ACTATTTTGGTGCTAGATGAATGCTGGATGTTCTTC 1381 30 100.0 34 .............................. TTGTACTAAGTTAGTGGCGGTTCTACTCTTTCCG 1317 30 100.0 36 .............................. GGGAAGAATGGCGGATGGAAGTATTCAAGACCCATG 1251 30 100.0 37 .............................. TGATGAGCGATCTCAATTTTTCCGTCGTTGCAAACAA 1184 30 100.0 34 .............................. TTGTACTAAGTTAGTGGCGGTTCTACTCTTTCCG 1120 30 100.0 35 .............................. GTGGACTAGAATGATTAAAGGCTTGCATTATAAGT 1055 30 100.0 37 .............................. ATTTGATAGATGTTTCGGAATATACAAAAGACAGCTA 988 30 100.0 36 .............................. GAATCATTTCTCCCACATCGTGGGATCTGAGTGGTG 922 30 100.0 35 .............................. CAAAATCTAAGAACTATGGCAATGACACTACTTTT 857 30 100.0 36 .............................. ACTTGAACATTTAAAGGATAATATTCTGTATTTGTC 791 30 100.0 37 .............................. AGAGCAGTTGATTTTGCATATAAAACAATGGGGACAT 724 30 96.7 38 ...................C.......... TAATACTTTTATCTGTACTTACAATTTCTAATAATTTA 656 30 100.0 36 .............................. CATTTCTCCTTTAATTCCCTTCTCCCAACCAGAGGC 590 30 100.0 36 .............................. GCCTATCCCCACCAAAACCAGTTTGCCCAATTCTTA 524 30 100.0 36 .............................. CCTGAATTCTACTCCCAGTTTAGTTAATCCGTCTAA 458 30 100.0 36 .............................. GTTAAAAAATAAAACTCTATCCATGTAAGCACAATT 392 30 100.0 35 .............................. TGGGAAATGAATTGATTATTACTGTTTATACTGAA 327 30 100.0 38 .............................. ATTTTTCATTTACACAGCAACTTGGAGTTTACCTATTT 259 30 96.7 37 G............................. GTATCTGCATCTATTTCTTGTAATGCTGCCTTAATGT 192 30 100.0 38 .............................. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 124 30 93.3 0 ......................G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 100 30 99.9 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TGTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 5623-5850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000024.1 Fusobacterium necrophorum strain DD5 JD14_23, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5623 30 100.0 35 .............................. AACATCGCAAGAGAGTTTCAACTAGCAGACTATGA 5688 30 100.0 37 .............................. CGATTTAACAAAGGAAACATATAAACCGGATGATTCT 5755 30 100.0 36 .............................. AATCTAATTCTTGGTTTTTATCCTGATTGTTCATAT 5821 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : CAGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTATCTTCTTAAAGGAGTGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGATAGTCTCTTGTGAGTATGATTTCTGGGTAGGATTGGGGAAGATAAATAAGGCAAAAGAGAAGGAATAGGATAGAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAACGATAAAAAAGTATATTGAAATGAAATAATATGAGAGTATTTTTTTGCTTGTCGCCCCTCAATAATGTAAATCTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : TTATCCAGTATAAACCCTAGCTTATCGCCTTGAATCATTCATATTAGTGCTACTTTCATTTCTTTGTCTCTGAGAGAGAACTTTTTTCTGTATTTTCTTTCTAAAGTTTTTTAATATAATTTTTTATTATTCTTACTTAATGATAGGAAATACTATTGGCATTAAAATACTTAAAATATTGGGAGTTTTATAAAAAAGTGCTAAGACAGAAAGTAGAAATATAATAATAATTTTAAAATTTAATTTACTTTGGAATACGATAGATATGAAATATTAAAAAATGATTAGTTTATAATTAAATATATATTTAAAATTCATGAGATGGAGGTAAACTTGGTATGAGACTTAAGTATGGAGCGGTGTTATATGTTGATAATAAAGGTAATAAACATATTGGATATTACGATGATGACGATGAAGAAGGAGCCATCATCTATCAGGGAGATTTCTTTTTGTCAAGAGAATATCTTGTTATTCCTTATAGAAGATGTACAAATAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 10760-11058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHJ010000024.1 Fusobacterium necrophorum strain DD5 JD14_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10760 30 100.0 36 .............................. TTTCGGAACTTATAATAGTTCCCTTTTCGGAACTTA 10826 30 100.0 36 .............................. AAATGAAGAATATAAAAAAAAGTATGTGGAATTTAT 10892 30 100.0 35 .............................. GTAAAAAGAATCTTAATCAATGATAATAGTCCTGA 10957 30 100.0 37 .............................. GTCAACTGTCCGGGAAAGATTTTAATGAAGCTTAAGA 11024 30 90.0 0 ....................GGC....... | TGA,A,T [11048,11052,11055] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTTCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TAGGGATACAGAGAAAAAAGCTTGATAATTCGGGGCTTTCAGCACTGTATCCCTATTTTAAAATTTATAGAAAAAAGAGAAAAGGATGTTTCACGAGATATAAGAAAGGATTGAACTAACTATATCTTGACTCCCTTTTGCAAGGATGGTGAAAAATAAATGAGGTGGATAATAAAAATAATTCTGTTTCCAGTCAGTCTGCTATTGAGTATATTTACAGCGTTTCTAACATTTTTACTTGGCGTTGGAACAACTATTCTGTATTTCTTAATGCTGATGTGTATAATTGCCGCCATAGGCTCATTTATGCAGAAAGAAGTATCACTTGGTATCGAAGCATTGATATTAGGCTTTTTATTAAGTCCATATGGAATACCAATGGTTGGAGCAGCCGTTATAGCCTTTCTTAAAGGTATCAATGAAGCAATAAAATCAATCTGAAAAATTTCATAAAAATGGTAACCAAAGACGATAGAAAAACTATCGTCTTTTTCTTTGCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //