Array 1 112833-109635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGWD010000012.1 Klebsiella pneumoniae strain 5012STDY7312591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112832 29 100.0 32 ............................. GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 112771 29 100.0 32 ............................. ATCTATTCCAGCATCGAGCTGCACCCGCAATT 112710 29 100.0 32 ............................. GTGGTTCGGGCGGCTCCGCGCAAAACCACGCA 112649 29 100.0 32 ............................. CACCGCGTTGCTGTTCCCGCCGGTCGCCGCCG 112588 29 100.0 32 ............................. ATATCGCCGTCGCAGTGGTAGAATCGGTCTTG 112527 29 100.0 32 ............................. CCCGGAGGAAACGTGGCAACAGTTCAATACCC 112466 29 100.0 32 ............................. AACGGAATTCAGTGGAGAGATGGGAAAGGTAG 112405 29 100.0 32 ............................. AGGACGGCGAGCTGATCGCCGGACACGGTCGA 112344 29 100.0 32 ............................. GGATACAAATCCAAACAGCGAGCCATTTTCCT 112283 29 100.0 32 ............................. TTTATCGGACCGGGCGCGGACACGCAGACAAC 112222 29 100.0 32 ............................. GCGGGTTAGTTATCCATGGTGCATAGGGGCGA 112161 29 100.0 32 ............................. TCACTTGATAGTTTATCTCGCCGCCGTGGCGC 112100 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 112039 29 96.6 32 ............................T TTTTTTGACGCGTTCGGACTTCAGGTAATATT 111978 29 100.0 32 ............................. GGTTTACCAGCGGTAAAACAGCAGGAAGGAGA 111917 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 111856 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 111795 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 111734 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 111673 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 111612 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 111551 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 111490 29 100.0 32 ............................. CTCGGTGACCGGCAGATCGTTTTGAAACACAT 111429 29 100.0 32 ............................. CGTCTGGCGAGGTTTACGACGAGCTGACGTTC 111368 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 111307 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 111246 29 100.0 32 ............................. CCAATTCATTAAAATACTCTGCAAGTATATCG 111185 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 111124 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 111063 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 111002 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 110941 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 110880 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 110819 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 110758 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 110697 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 110636 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 110575 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 110514 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 110453 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 110392 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 110331 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 110270 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 110209 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 110148 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 110087 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 110026 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 109965 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 109904 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 109843 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 109782 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 109721 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 109663 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTATTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1422-786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGWD010000030.1 Klebsiella pneumoniae strain 5012STDY7312591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1421 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1360 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1299 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1238 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1177 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 1116 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 1056 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 996 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 935 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 874 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 813 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAATTACCGGGTGCCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //