Array 1 23-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015520.1 Thermococcus piezophilus strain CDGS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 23 28 100.0 38 ............................ ATCATTCCTCTGTGCAAGAAAATTAAGAATGGCCTCCA 89 28 100.0 43 ............................ TCATCATCAAGCCAAAAAACCTTCCACTCCTCATCCTTCAAAG 160 28 92.9 0 .......................A..G. | ========== ====== ====== ====== ============================ =========================================== ================== 3 28 97.6 41 TTTCAGTAGGACAGAATTGTGTGGAAAC # Left flank : ATCGTCTGCTTCTATTATTGAGT # Right flank : CCCCATATCTTTCCATCTGGCGGCTGTATTGTTATTATCTCGTTTGGTTTCCGTAGAACGGCTCGTATGAAAAGAGCGGGAGCTAACGAACGAGCTAAAAGCCTGACCGAAACGTTTCTGTAGAGTCGGTGGATATTAAACGGAGGGGTAAAACGTGATTTCCACAGGACTATAAGAGGGGACATACAACCACAAGAGTTATAAGGATAAAGCATGCACGTTAAAGACGGTAACCTTCCGGGGAGGATAGCTTATGCGCATTAAGGTCAGTTTTTATTTCCCTGATGGTGGGTTTAGTTATCCCAACAAGCACGCCGTTCAGGGGTTCATCTACAACATGCTGAAGGGCACGGAGTATGGGGAAAATCACGACGCATCGAGGTTCAAGTTCTTCACTTTCTCGGACGTTTTCATAGACTCCCTGGGAAGGCCGACCTTCTTAGTCTCCTCCCCGGACGAGGGATTCATCAGGGCACTCCACTCCAGCCTGAAGGACAGGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAGTAGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 147812-149052 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015520.1 Thermococcus piezophilus strain CDGS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 147812 30 100.0 38 .............................. AGGGTGGGCCAAATTGGGCCATAGTGGGCCGTTTAAGC 147880 30 100.0 37 .............................. CTTTGAGCTTTTAGTGTTCTCAGGAATAAGACTAACC 147947 30 100.0 36 .............................. AAATATCTAAGCTTAATACAGCTCCCGGTTGAGTGG 148013 30 100.0 37 .............................. TCGCTGTCTTGGTCATCATCTATATAATGAAAGTAGT 148080 30 100.0 36 .............................. ATGCAGTATTTGATGCTATCGAGCCGACAATCGCAA 148146 30 100.0 37 .............................. CTTCAGAGCCGTCCACATACACATGAACGCTCTTATA 148213 30 100.0 39 .............................. GTTGATGGGTACGTCAAAGAAATTGAAAATTTAACTCCT 148282 30 100.0 38 .............................. TTCAAGGACGAATATATCTTCAAGTTCACCAGCTATAC 148350 30 100.0 37 .............................. ATATCCACCCGTATCACCTCCGTTCTTTTTTTCTTCC 148417 30 100.0 37 .............................. AAGGATGACCCAATATCAAATTTTAAGTTTGCTGAAA 148484 30 100.0 36 .............................. AGTGGTCGAAGGTCATGTTAGGTATAAGAACGTTCC 148550 30 100.0 37 .............................. AAGTCTGGAAGAATTCCTGCCAAGCCTCCTTTATACT 148617 30 100.0 37 .............................. CCCGAAGCGCTTTCAGGGAATACCCAGGTCGCAGACG 148684 30 100.0 37 .............................. ACTGGTAAATGAATGTACACTTCTACTTTGTTCCTCC 148751 30 100.0 37 .............................. TAGTCCATTTGTTTGTATATTGTCCTCATTTCTTCGT 148818 30 100.0 38 .............................. TTCTGAAGGACAGCCAAGGCAATGAAGTCTGGAGCGAT 148886 30 100.0 39 .............................. GCAGTAATATAAAGTATCCGCTACCCTTACCAATTTGCG 148955 30 100.0 39 .............................. AGACGGCCGCGGTCAAAGGCTGGTTTGGGGCCGTGGAAG 149024 29 73.3 0 .C.A.......G.C.C...-.....A...A | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GATCGGCAATATCTGAGGGCCGCAGAATTTTCGTTTCTTGTTTTTATCACCCCATTTCTGGAGTTTCATGTTTTTAGTCCGTTTTTTGCCAGTTAAGTTCATTAGAGGGCGCTGGAAGTCTCCAGGAGCATTTCGTAACAATCGAACAAAATGTAACAATTTCTTAAAAAAAGTGTAACTAATATTTTTCGAAAATCTGCAAAAGGACCTCTGAATAGGGCTTTAGCGCCGTTCCCCAACAAAAGGGAATATTTGAGGCATTAAATCAGCAGAAAAGCCAGTTTTCAAATTTCAAGACATCACAAGCCGTTGGAAGTCTCATGGACAGGGATGTGCATGAAGTATTTAGAGTCGCAACGTTGGAGAGAACCGGAAATTAACCTACGAACGGTACCCGAATGGAGGCATCTCCACCCCCCGAAACTGCACCATTATCAAAAGACTTATAAGATTCAATGTCGCTTACAGCTTTTAGAGACAAATGAGGGAAAAACCGCCCT # Right flank : AATCCTTCACTCCCGCTTCCTGTGCCGCTCATACCAGCCCCACTCCTTCTTGGGACCAAAAGCCCTAACGCCCTTCTCGACGAGGGTTATTCTGAGCTCCTTGGCCATCTCGTGGGTTATCTCACCGCGCTCCTCCATCCAATTGATGATTTCGAGCGCTTCCTCGTCAGTCTCGCACCTCCTCAGGAAATCGATGATGGTCGGGTTGTAGCCGATGAAATCCATGAGCTCGTCTTCCTCGATAATGGCTTCCCTTTCGTCGGTTCTGTAAACGTCTATCGGAACGCCTCCCCCCTCAAGCTCTCCATAGAGATTAGGAAAGGTCTCCTTGAATTCCTCCTTATCGTATTCCTGCCAAGCGAACTCGTCAATGGGGCGTTTCTTCTTCTGCTCGTCCATACCAACACCTAACTGGACTACGGGTCGAGGGTTTATAAACCCTGAGTGGGAGTTCCTAACATGAAGGGCTCTTACTTTTTGGTTATATTGCTCGACAAGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 1384694-1383161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015520.1 Thermococcus piezophilus strain CDGS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================= ================== 1384693 30 100.0 37 .............................. CAGTTGCGAGCTTTATGGGAGCAATGGGATTCATGGC 1384626 30 100.0 36 .............................. ATGTAAGGATGGCTTCTGGCTAGGCTTTGGAACTGG 1384560 30 100.0 37 .............................. TGACCTTGTAGTAGATGAGGTCGCCGAACTTTGACGG 1384493 30 100.0 36 .............................. TCAAAATCATCGAAAAAGTCAAAACCGCGTTGCCGT 1384427 30 100.0 36 .............................. ATGACAAAATCGCAAACCAGATAATCGACACATTAG 1384361 30 100.0 37 .............................. ATTGTTACGCTGTTTTCTGCTGCATAGTACAACAGCA 1384294 30 100.0 37 .............................. ATCGACATTAGTAACTATACAATAACAACGACGAATG 1384227 30 100.0 38 .............................. AGTCTGCTTGTGAGATAGCTCGCGTCGAGACTGCCAGT 1384159 30 100.0 34 .............................. CTATACTAATATAAGTCGCGCTCGGGTTTGTATC 1384095 30 93.3 33 ............................CA TTCTTTTACAGCGCCTTATATTGCGTGGTCGAC 1384032 30 100.0 38 .............................. TCCGCCGTTCGAATGTCCCTAACAAAATACTGTAGGAG 1383964 30 100.0 37 .............................. TAGACTTTGTACGTAAGGACGTCTGGACCTCCGGTGT 1383897 30 100.0 61 .............................. TTAATCTTTCGGGCTCTTGGGAAGGTTCAACAATCTAAGGTTGCACATGAACGCTCTTATA 1383806 30 100.0 39 .............................. TTAATCTTTCGGGTTCTTGGGAAGGTTCAACAATCTAAG 1383737 30 96.7 36 ....................T......... AAAGGTTCTGGACCTCATCAATGAAAAGGAAAACCG 1383671 30 100.0 37 .............................. AGAGTGCAATACCCACTCCTGTTGCGAAACTTACAAT 1383604 30 100.0 37 .............................. ATCGAAGTCGAAGTTATGAGCAAATATATAAAGCGTA 1383537 30 100.0 38 .............................. TTGGTGATGGGAGCTCCCAATGAGCCCGCCAATACCAA 1383469 30 96.7 44 ............A................. CGTCCAATTCACAGCGGTCTCTACGTCATGAATAGTTACCCCTG 1383395 30 100.0 38 .............................. AAAGACGAACCGCTTAACCGGAAAACCCTCTGGCTTAA 1383327 30 100.0 37 .............................. ATTAATGAATTTCGACTTATTAAGCGCAAACTCGTCC 1383260 30 96.7 38 A............................. TTGAGAGGCTTGAGAAGAAGATTCGGCGGTTGAGGAAG 1383192 30 93.3 0 .........................C...G | G,T [1383163,1383165] ========== ====== ====== ====== ============================== ============================================================= ================== 23 30 99.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : CTGAATAAGGTCTTTTAGGGATTTTGGAAGGCAGTATCAAGTTTGGAGGGGCACATTTTGGAACTGGCGTACTCTGAGGAGTTAAAAGGAAAAACATGGCACTGTCGTCAAATGGGAAGTCTTTAGTAACATAAAGTAATTATCAAACTTAATGTTGCATCAAAGATATTTGATGTAACGAAATTTTTTCTGAAAGTTAAGATGAAACTTCATGGGCCTCCAAAAAGTTAGCAACCTGTTTAAACTCGGCGTTTTTATAACCCAAAGGGTCCAATTGCTCGTTAAGTCAATCACAGCGATCTCTATCCTCCGGAACTTGCAAGGATTACCACACACAACACCAGAAAGACGTCTTGGAGCTTTCTATTCCCCAAGTGATCATTTTAATCCGGAGATTTCCAAGGCCACATAGATACACATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGTTCTCATAATCTTTTGTTAGGCAGAAAAAGGAAAAAGCCGCCCT # Right flank : TTCTTCTGGAAAGAAATTAATTACATAATTCTACAATAAACCAATAATCTAATTGTGCAAAGATAGGTCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTGGAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCAATCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACGCTGTACTGGTCAGCCCACTCCGGATACTCGATGGCCTCAACCATGTCGCCCCTTATCTTGTCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTACGGGCAGGTTGGGGTGACGAAGACGAGTATCCTGACGTTCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCTGGCATGAGGTCGGTCTGGGCGTTGCTGACATCGACGAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 1845174-1845871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015520.1 Thermococcus piezophilus strain CDGS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1845174 30 100.0 37 .............................. TATCGTTGGTATATTGCTCGTATTGCGGGGTCAGTGG 1845241 30 100.0 37 .............................. CCACCACCACGTTGCATAAGCCAGCGCCTCCTTTTCA 1845308 30 100.0 37 .............................. TATCAGTTGACGCTACAAGCGACCAGGTGTTCCCACC 1845375 30 100.0 37 .............................. GTGGCGAGATTAGTGATGGACCACATGAGCTTAGCGA 1845442 30 100.0 36 .............................. CTCCTACTGCAATTTTCACATCAAGCGCGTAACCGT 1845508 30 100.0 37 .............................. TTACTGCCCTATCAAGTCCGTAACCTAGAGGATGCCC 1845575 30 100.0 37 .............................. TGCATCTTCGACCTCCTCAATGACTTCGCTCACGCTC 1845642 30 100.0 37 .............................. ACGGAAGAAGAGAGAAGATACTTCAAAGGGCTTGCAG 1845709 30 100.0 35 .............................. TAAGAGCCCTCACAAGCATTCCTTTATCTGCAAGT 1845774 30 96.7 38 .............................G AAAACCCGCCGTCACCGCCGCCGTCATTGGGACATCAA 1845842 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 37 GTTGCAATAAGACTCTAGGAGAATTGAAAA # Left flank : GGGGACTTATAACCCTTGCCCGAAGAGATTCCGGAGCAGATTCATACTGCGGCATCCCTGGCCTTCTTACTTCATCGTCCGAAACTCTGGAAAATGGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACACTCGGTAACTATCAGACTTTTTGGTACTATCTTTACCTTATAATGTAACGAAATTTTTTCATAACATTGAGAATAGCACGATACGGCTGTTTTTATCCCATTCTCCAGAGGAAACTGGTCTTTTTGACTGTTAAATGATTTTGAAGTCTGAAAATTAATTTTTCTCTTTTCTTCGGCCTTTGGAAATCTAGCGAACATTCTTGTTCACAGAATTTTTGAGCTGTACAGGCCCTGAAATTCCTGAGAGAGGTTCCTAAAAGGCCCCGAATAGAAGATCCTCGTAGCGTTGAAACCACCCTTCTGCAGAAAAACTTATAAGATTCAAGGCACTTTATAGCCATATAGAGCAAAAGAAGGAAAAAGCCGCCCT # Right flank : GAGGGCAAAGACAGCGCCTATCTGTAGTTTCAATAAGACTCCAAGAGACCCAGAGCCCTTAAAATATACCTATGGAATGCAGAGGGCCTCACCCAACGGTGAATATCCTTATCGTGTTCGTTCCAGCGGTCTTCCCTATCGGCGTTCCTTTCGTCAGCAGAACCGTGTCGTTTTCGTTCACGAGACCAAGGCCCTTGATGAGGTTCAGTATCTCGCGCTCGCTGGTCTCCTCGACGAGGAAGGGGTAGACTCCATAGGAGAACATGAGGCTGTTGGCAACCTTCTCGTCGGTGGCAAAAGCCAGAATCCACTGTCTCGGCTTGAAACGGGATATCAGCCTAGCCGTCTCACCTGTCCTCGTAGGGGTAAGGATGTACTTGATGTCTATCGAGTTGAGGGCCTCTATGATGCTCCTCGCTATGGCGTCTTTTATGGTGCTCTTTTTGGGCATCTGGCCCTTCCACTCGCTCATCTTCCACTCTACCACGCGCGTTGACCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAA # Alternate repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 5 1926393-1928783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015520.1 Thermococcus piezophilus strain CDGS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 1926393 29 100.0 40 ............................. GTAGATACTCGTTGTCCTGTTGCTCTAAGAATTGTGCTTT 1926462 29 100.0 37 ............................. GTAGCGAAGTTCACAACAATAGGTTCTTCTTGGAGTG 1926528 29 100.0 38 ............................. TCTTTCTTAGTAGTGCCTCGAGCTCGTTGATGTCTCTG 1926595 29 100.0 38 ............................. CGCAGTAACAATACCACTAAAACTACCCGCTGGAAAAT 1926662 29 100.0 36 ............................. CGTATTCCTTGGCGATATACTTGATGGTGAGGAGAT 1926727 29 100.0 36 ............................. TAAGGGGATGGCTGAGCTTCATATGGCAATGGTCCA 1926792 29 100.0 38 ............................. CGCCTGTGGTGAGTGGTATAGATACTGGACTGAAGAAG 1926859 29 100.0 37 ............................. CTGAACATTCTCATTCTGGTCCTGCGGTCGTACACTG 1926925 29 100.0 40 ............................. CTTGAACTCTCTCTTCACCCGGCGAGGGTTGATGCCATAT 1926994 29 100.0 37 ............................. AAGCGACACGCATGGATAAAAACCTCCAGCTGTTTGT 1927060 29 100.0 37 ............................. GTCAGATTGATATGGCATGGAACGCTTCTGTACAAGT 1927126 29 100.0 38 ............................. TAGCTTTGGTTCTTAAGTAGTCGGTAATGAACTGCTGA 1927193 29 100.0 38 ............................. CGAAACGTATATGAGAGATACAGGATACAGATTTATGA 1927260 29 100.0 37 ............................. TTGTAGTTCACCTCCTGCACGCTCGCCCGCCAATGAA 1927326 29 100.0 38 ............................. TCTTTTCACGGAGCTCGTGTATTACTTGTTCGAGTTCA 1927393 29 100.0 38 ............................. CAGTATTATCTTGTCTGTGTATATCTCCATTTCAACTT 1927460 29 96.6 37 ..........................G.. GGTATTTTATCAACAACAACTACGACGTCCGCTTCGG 1927526 29 96.6 38 ..........................G.. GTATCTCGTCGATTTTGCGTATCGCTTTAATCATTTTG 1927593 29 100.0 38 ............................. TTTATTCCGCACATATTTACCACACCTCCCCATACTTT 1927660 29 100.0 38 ............................. TGAACTCTACCGTGCCCTCGTAGAAAGTTACTGAGAAA 1927727 29 100.0 41 ............................. TGTACTGTCAAGTTTACAAATACTTTCCTCTCATGCATCGC 1927797 29 100.0 46 ............................. TGTTATCGAGGATCTTCTCGATTTTGTCTTCGGTGAATTCTTCTAA 1927872 29 100.0 37 ............................. TTGGGGCCTGATAGTGTTATTTTGATTCCTTGTCCTT 1927938 29 100.0 37 ............................. TTTTCACTGTTTCGTTGTCTTCGTGCCACACTTCAAA 1928004 29 100.0 37 ............................. TTCTCGAAGAACGAACCCCTCCACACCTTGACCCTAA 1928070 29 100.0 37 ............................. AGCTCATCTGCATAAATATAGCTTTCGTCGGGCTCTT 1928136 29 100.0 39 ............................. CTTTACTTGTGCTTCGTATCTACTCTTCTCATATGCTGT 1928204 29 100.0 49 ............................. TATGCCAGGTCTTCGTAGTAGTCGCTGAATGATTCCTCTCCGAATACCT 1928282 29 100.0 39 ............................. AGGTTTAGGTCCTCAATTAAGGTTTCAGGAAATTTGCCA 1928350 29 100.0 38 ............................. TCGCCACGTTGTCCTTATTCCTTCTTAGCTTCGCATGT 1928417 29 100.0 38 ............................. AAATACAGGGGTTTCATCATAAAGCAGTCGTGAGAACC 1928484 29 100.0 38 ............................. ATTCTAATAATCATCGCCCATCACATCCAATACTTCGT 1928551 29 100.0 38 ............................. CTCTCATATGCTGTAACTAACTCCTTAAGCTCGTTCAC 1928618 29 100.0 39 ............................. CTATCTCAACATCAAGCGCGTAACCGTCGTACCTGTCGT 1928686 29 100.0 38 ............................. TGGATAATGAAGCAATATGGATGGTCTGATTGGGTTGT AG [1928702] 1928755 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================= ================== 36 29 99.8 38 GTTTCAGTAGGACAGAATTGTGTGGAAAC # Left flank : AGAAGTAAGAGGCTATCGCCCCGAAATTATGCCCTATCATATTTTATGCCCCGTTTTTGGCTCTTTGAGGGTTTTACAGAGACTACATCCCCGGAAAAGGGCAGACAACCCCGTGGAATTCAGAAAGCATTACTTACAAAACATAACGAGAAGTTACATTATATGCCACATAGTGTAACCAATTTCCGGACGGAATGTCAATCAAGCCAGCTCGACGGCCGAAAAGTACCGATCCCCGATATAATTGAACGTTTTTGACAGTCTTGCCGCATTCGGGCAGACACTCCAAAATACGGGCCGCTTCGGGCTCTGGAACCCTCATGCACTGCAAAGTACATTGAGAATTTCGGCCCCAGAGAAAAGGCACTCTCCCCAGAAAAGGCTGGAAAAGCGGCAGATTCAAGGGCTTCCAGGGGCTCCACAGCAGAGCTTTCCAGAAACACTTAAATATCAGAGGTTACATAGCATTCTGTTAGGAAAACAGAGTGAAAAAGTGTCCT # Right flank : TGCAGGTCTTCGACATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //