Array 1 54908-56844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDSI010000109.1 Phocaeicola vulgatus strain VPI-BV8526 scaffold30.1-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 54908 33 97.0 32 ................................A ACGTGAAAAAGAGATAGAGGAGCGTGGAAATA 54973 33 100.0 33 ................................. TCAAAAATAAGAATAGGTGCTGAGCTTGATATA 55039 33 100.0 32 ................................. TTTGATTTTGTAAATGAAAACGACCTGAGGAT 55104 33 97.0 32 ................................C CAACCCGGTTTTAATCGACCGGGTTTTGGGGA 55169 33 97.0 32 ................................A GGTAAAAGGCGGAATAGGTGCAATTTTGGTCA 55234 33 97.0 32 ................................A GACAAGAATAGAAAACTGTTGAATGATTTTAT 55299 33 100.0 33 ................................. TACTTATACACAACAGGCAGGACTTATGATACT 55365 33 97.0 33 ................................A TACCCTTAGCAACGTAATATTGCTTGATGAAGA 55431 33 97.0 34 ................................A CTATGAAGAACTTTACAAGACATAAGAGGAACAT 55498 33 97.0 33 ................................C TGAAAAAAAACAAAGATGTTATTCAACTGGCCG 55564 33 100.0 33 ................................. AATAGGCTTGTGTACAGGTATGAGAATTGGTGA 55630 33 97.0 33 ................................A AAACGGAGGACTTAATAAAAAAGTACGGGCGGC 55696 33 100.0 33 ................................. TGAGCAAACCAACGCCCCGTCCTCAATCATTAA 55762 33 100.0 34 ................................. TGTTTTTTGGGCGGTACGAATTGGGAACAAGACG 55829 33 97.0 32 ................................A TTGAGGACGGCAAATTTAAAATCGAACATATC 55894 33 97.0 34 ................................C TGTATCACAAAGATACGAAATAGTTTGCAAAGTA 55961 33 100.0 33 ................................. TCTTTAATCGAATCCACAATAACAATAAGACCC 56027 33 93.9 33 A...............................A TAATACGCTGAGCATTAGAATTAAGCAAGATTT 56093 33 97.0 32 ................................G CTCATTTTTGTTCCGTTTTGCTCTAATTTATT 56158 33 97.0 32 ................................A TCCGGGAGATCGCCATACGTTGCGACAGACGG 56223 33 97.0 32 ................................A CGTGAACAGGTTCAGAAAGCCATTAATTCTCC 56288 33 97.0 33 ................................C TTTAATCTTTTAATTAGTGCATCAGCGCAATTA 56354 33 100.0 33 ................................. CCTGATTAAGAAGAATTTGAGTCATATCAACTT 56420 33 97.0 32 ................................G TTGATTGACAACAGGTAAAAATGCTCCGCAAA 56485 33 100.0 32 ................................. TATGAATAAAATCGATTATGAAAGGCTGTTAA 56550 33 100.0 32 ................................. TGCCTTAACAGGCACATTTCCGTATCTCGTAA 56615 33 97.0 31 ................................G GATAATCCACTATGTACGAGATTATTTTTTT 56679 33 100.0 32 ................................. TATGAATAAAATCGATTATGAAAGGCTGTTAA 56744 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 56810 33 90.9 0 ....................A.........G.A | TA [56829] ========== ====== ====== ====== ================================= ================================== ================== 30 33 97.8 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : GATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAG # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTGTTTGTTATATTGTTGATTATTAATGTGCTATTGTCTGTTTGTGTCGATTGTTTTTCTTATCTTTATAAAATATATTGAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //