Array 1 1-1005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIA01000128.1 Escherichia coli strain F6700 Contig_0000128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 62 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 123 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 184 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 245 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 306 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 367 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 428 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 489 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 550 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 611 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 672 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 733 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 794 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 855 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 916 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 977 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIA01000132.1 Escherichia coli strain F6700 Contig_0000132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 113 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 173 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 233 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 293 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 353 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGTACAGGCAGCTTAGAAAACAGGCACCCGGCTGATGTTCGTAGGCGACATG # Right flank : TCTAATATTTCAAAACCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79418-79090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIA01000031.1 Escherichia coli strain F6700 Contig_0000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79417 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 79357 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 79297 28 100.0 32 ............................ ACATCGTTTACTCCATTCGCCGCGTTAATGCG 79237 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 79177 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 79117 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAAGTCCGCGCGATTTCATTGATTAACCGGAAC # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16066-15364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIA01000045.1 Escherichia coli strain F6700 Contig_0000045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 16065 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 16004 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 15943 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 15882 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 15821 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 15760 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 15699 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 15638 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 15575 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 15514 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 15453 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 15392 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10009-9139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIA01000066.1 Escherichia coli strain F6700 Contig_0000066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10008 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 9948 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 9888 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 9828 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 9768 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 9708 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 9648 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 9588 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 9528 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 9468 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 9408 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 9348 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 9288 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 9228 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 9168 28 85.7 0 ....................T...C.CT | C,A [9142,9145] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //