Array 1 23524-22718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000011.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23523 28 100.0 32 ............................ ACGGCCTGGCAGCTGCTTGTTCTTCGATATAG 23463 28 100.0 32 ............................ AATGGTATTGTTTATTACTTTCAACTGCCCAA 23403 28 100.0 32 ............................ ATTGCCGATACAATACTTTGTGCAAGGTTTAA 23343 28 100.0 32 ............................ ATTCTCGACCTCTACTATCATGATATTTATCT 23283 28 100.0 32 ............................ TAACAACTTCTGAAGTGAATGATAACAAGTGG 23223 28 100.0 32 ............................ GTTATTCTCAATCAAATAAATGTTACCGGTAC 23163 28 100.0 32 ............................ ACGATTGTATTTTCTATTCTACCGCCGACTAA 23103 28 100.0 32 ............................ TTTGTAGAATTCGAATTGTGTTCCCAGACTTG 23043 28 100.0 32 ............................ ACTGTAAATTTCAGTCCAATTATCTCCAGAAT 22983 28 100.0 32 ............................ TCAACAAGTAACATATCTGGATGTGGTTTATA 22923 28 100.0 32 ............................ TACAACTCATAAAAAAATCTGTAATGATTTGA 22863 28 100.0 30 ............................ TTGAAAAAGCCGAAGAAGTTAAGAGTGAAA 22805 28 100.0 32 ............................ AGAGTGGGGGTTAACCTTGCTTGATAATATAA 22745 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTTACTGCCGCATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCAATTAGTGATTATGCTTTACTGATGTCTATTGAAGCTATTCCCGTTACGATAAAAGGTTATTTACGTTTAATTCGTATTCATCCAAAAGGGCAAAGCGCATTGAGGCGTGCTGAAAAACGATTAACAGCACAAGGTAAATGGTCGGCAGAGGTTAAACAAAAAATGATAGAAAAATGGGGAAGCGTTAATTTGCAATATCCTCATATTCACCTTGCCAGTAAAAGTACAGGGCAAAAGTTTATTTTGTGGTTAAAACAAGAAAAATGCTTAAAGCCTGTATCAGGTACATTTAATAGCTATGGGTTAAGCCAAACAGCTACCGTTCCCGATTTTTAAATTGGCAACCCTTTTTTTGAGGATAATTTTAACTAATTGATTATTATTGATATTAATATGAGCTCAAAAAAAGGGTAAAAATAGGGGAAAATATCGAAAGCTCTTTTACAATAAGGCAATTTTGCAAAAAAACTCTA # Right flank : AAAGTGTTTCTAGTTTTTATTAACTGAAACACTTTATTATTAGTATCATCAAGTAACTATTCTGCGCCAATTTGTGTACTCATTTTTATCTCTCGATTATCGGCGATTTCTAAATTTGACAATACGGCTAATTGAGGAAAATTCTGACGTAAAAATTGTGATAACATCGGTCTTAGTGTATGGTTCACTAATAATACTGGTGGAGCACCGATTGCTTCTTGTTGATTAATGGCTTGCTTAACTTGCTCTATGATATGCTCAGCTAGTCCTGGCTCAAAATTGCTTGTATTTTGTAGAGCTTGTAATAATAAGCGTTCTAAATTGATATTTAATCCTATTACACTGATTGGATCTGAACCTGGAAACCATTGTTGGGTGATAACTCTGCCTAAAGCCATTCTGACCATACTAAGTAATTGATAAGCATCATTTTGGGTAGGCGCATGTTCACAGATTGTTTCAATAATGGTACGCATGTCACGAATTGATACTTTTTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15063-16710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000028.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15063 28 100.0 32 ............................ TTGTTGTAGGTCTGATAGATAGTATTCAGTAT 15123 28 100.0 32 ............................ TCTCACCTGGCATTGCATATTGCACTTCCGCA 15183 28 100.0 32 ............................ AGTATTTAAGTGATGCATTAGCCAGCTTTAAC 15243 28 100.0 32 ............................ ATAGATGCTAATTTATTGGAAGTCATTATTAA 15303 28 100.0 32 ............................ AGATGGCTCTACATTAGTATTAGGCACGGATT 15363 28 100.0 32 ............................ ACCTAAAATTATCAGGCGAACAGATGAATTAG 15423 28 100.0 32 ............................ AAACCAACGATAAATTACCGTTGGTTGTTGTT 15483 28 100.0 32 ............................ CTTTGCAGCTATTCAATGTGCGAAAAGGCTAC 15543 28 100.0 32 ............................ TGACATAGCAGAGCCACCAGCACTCGCTGATG 15603 28 100.0 32 ............................ TATCAGTTCTGCTGAAGCGATAGCACTGGCAT 15663 28 100.0 32 ............................ TGTTAATACTGCGTCTTCAAATGCTTCAAATG 15723 28 100.0 32 ............................ TGACCTGATATACATTTTATGTATACCAGCCT 15783 28 100.0 32 ............................ TAAAAGTCCCCGACGGTACAAAGAAATTATAG 15843 28 100.0 32 ............................ GCTCGGGCATGCAGTCGAAGCAACGACTGATT 15903 28 100.0 32 ............................ TGAAAGTCTGGTAATTGGTGACCGCATTAAAT 15963 28 100.0 32 ............................ AAGATCTACAATGGTCCAGCTTATAAAAAAAA 16023 28 100.0 32 ............................ AACCCATGTGACTGGACGAACTCCATCAATAA 16083 28 100.0 32 ............................ TTGGTTAGATTTAGCTACTTATCAGCGTATAG 16143 28 100.0 32 ............................ GTTGCGATACAAAAGAAGGTAAGCAGCAATGG 16203 28 100.0 32 ............................ GCATTCTGGATCTGAGCATGAACAATATTGAT 16263 28 100.0 32 ............................ AGAACACAAACAGCAGGTTTATAAAATTATGC 16323 28 100.0 32 ............................ CAGTCGAGTTAAAAATTGTCATGATAATTGTC 16383 28 100.0 32 ............................ AGATAATAAAAATAGAGCTGTGCCAAAAGTTA 16443 28 100.0 32 ............................ TGTCGGTCGACCCGTTATTTCAACGCGACCTT 16503 28 100.0 32 ............................ GCCCGTTTTCGTTTTCTCATTTGAATTTAAGT 16563 28 100.0 32 ............................ AACAGCACGTTGTGCTTCAAAACGTGCAGCAT 16623 28 100.0 32 ............................ GAATCGGCAGATAGCAACAATACAATGATAAG 16683 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : TTTGCGCTTTAATGAAGAAGCAATATAGCGTTTGGTTGCTGCTTCATTTAAATTCTCTTCTCCGATTAAGACGTTAATTTCAGCTTGTTGCTGACGTTGTGCATATTGATAAAAAGCATCAACCGTACTGGCTTTGTCGGGAATGTTATTTAAATCCGTTTGATTAATAAACTCAACAATTAACCCTTCTTTAGCTCGGTTTTCTAAACTTGAACGAATCAATCGTTGAGTCTCTTCAACAATATCTTGTTTGGTTTTTTCTTGTTTATTTTGTTCATAAATTAGCTCAAGAATATAATCCAATTAGTCTTTGGTTTTTAGGTTTGGGTTGTACTATGTTATAACAAAGCAAAAAAACTAAAAACCAAAACCCTTTTTTTCGCCATATTTTAAAAGTAAAGAAAATCAAATAATTAAAAACTTCCCTCAAAAAAGGGTTTTTAAAACCCAAATCACTATTTGCCTTTTTGCATACAATATTGATAGTATATTAGCTTCTA # Right flank : ATGATAAATGATTTCCTAATAACGATAAGCTGTTTTGCTGAAAAATACTTTACGCAGTATTACCGTATGATAAAAGCGAATAGATCGTTGTCAACTTTATGAGGCGCTAGTTATTTGTTCTTTTTGCCATATCTCCGTGAAATATTTATCACTTTGAGCTGTTTTACTCGTTTGCGGGCATGGGGGGATTTTGTCAAATTTGATTAATACCATGGTTATCATACGTTATTAACAAATAAGATACTGGAAGTTTTTATTTATTTCGAAACGGTATAGAATCCTGAATATTTTTTACAAAAAAATAACTTAAAACGTGACAATTGTGTAAATACATTCATAATGATCATACAACCACGTAAAAAATTACGTTGCTTGTTTTTGTGTGGTATATGCAATGGGTATTATGTTAGTTAATGCTTGATTAGGTCTTTTGGGGTTATCAATGGTTGGATAACTGATCCATAATTCGTTTAGCCAAATTAATAGCGATGGTTTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55263-55650 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000028.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55263 28 100.0 32 ............................ TTAAAACGGCAGAGATTGATAGATGGTATCAA 55323 28 100.0 32 ............................ GTGGAGAGGAAAGGTTCGGAAAACGAGGTTAG 55383 28 100.0 32 ............................ AGTTTTGCGGATTGTGGGTAAAACTTCCTCAA 55443 28 100.0 32 ............................ TAAATTTTTTAGTTACTGCGGGATCTTTAACT 55503 28 100.0 32 ............................ AAGAGCGTTTAGTAAATTTAAGCAGTTTAATG 55563 28 100.0 32 ............................ GCCAATTGTTGTGCCTGCAAAATCGTTATCAG 55623 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : CGACTAATTGCAAAAAAATATCTAAAAGATCTTCAGAAAGACCATCAGTTTTATAATTATGAAATTGATAACTGACATGGTGATCATCAAGCCAAGTAAAGGCCTTTTTCATTGTATTGCAGTTTTTAATGCCATAGATGATGTACATAATAGAAATCCAAGTTTGAAGGATAACAAAATTATAGCAGTATGGGCATTGTGCAGCAAATTGCAAGAAACTATTTGGTTAGATATCTTATTATTGATTGATTTAGTGTCATTAATTTTTTATCCATTGGTTTTATCTTAAAATAGAAATAAAACCAATGTGGTATCTGATGTTTTTTGCGTGAAAAATTAAGTTATCATATAAAAATTTAAAAACTTGTTACCCTTTTTTTTAACAAAAAATTAAAATTAATAAAAACAATGAATTATAAAAACCTTTTCAAAAAGGGTTTTTGAAGACAAAAATCCTATTTGCCTTTTGCCAAACAAAGTTTATAGTATATTCGTTTCTA # Right flank : AATTGCGGGGGCTCGCGCCTCCCCAAATTTATAGCTTAACGCCGTATAGGTGTTTATTTTATATAAAAATAATAGATTAGTAATTTATTTTGATAATTTAATAAAGCAGTAAGCTGATATTTTACAACACTCGAAGATAATTATTGCTATTTATTCAGCGTTGAATAGTGTTGACGCTCTAGGTTTGTAATTAGCAAATTTTATACTCAAACGCGCATTCACCTAAAAGTTTTTACATTGTGATTTATCGAGTTTTGATAGCGTTACATTTTTAATTACAAAATAACGCTAGCATTAATGTTGAAGATAAAGAAATAGCTAATATTACTATAACAGTAGAGCTTTGTGCGTATTTTAATTATGTGGCAATGATCGTTCCTCAGAATAGCTCGTTCATTTTACAATTTTGTCTTAGATTGATGTAGGTTTACCACGAGTTTCCCAATTAAAAATTGCTAGCCAGATAGTATTTATTATTTTCAGTGGTAATTAATTTATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 69043-67241 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000056.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69042 29 100.0 32 ............................. TTAGGCTTTTTGTGGCTGTCACAGGTGTAACC 68981 29 100.0 32 ............................. TTCGTTGGCTTTGTATATAACCAATTCAGCCA 68920 29 100.0 32 ............................. TCAATATTTACTGGTCAATGCTTGGGCAATAT 68859 29 100.0 32 ............................. CTGTCAGATTGTTGCAGGAAAACCGATTGATA 68798 29 100.0 32 ............................. CACACTCTATGAATAAGTGCTTTGATTTGAGC 68737 29 100.0 32 ............................. GTATGCAAAATATTTCGCTGTTCGATTGTTCG 68676 29 100.0 32 ............................. CACAATAGCTATAACGGCGTTTCTAAATTTAA 68615 29 100.0 33 ............................. GAAATACCTAGACAATCAGTACAGCCGTGGACA 68553 29 100.0 32 ............................. ACTTTATGGCTTACTTTGTAACGTTGAATATA 68492 29 100.0 32 ............................. TATTGCCTTGAATCTTGATGTGCTCTAAACAA 68431 29 100.0 32 ............................. CATTAGGTTTGCAAATGCAGTTTTCCTCACAA 68370 29 100.0 32 ............................. TAAAAGCAACAACGCCAATCGTGCGCACCATT 68309 29 100.0 32 ............................. CCCTGATAGTTTGAGGAATCCCAAAATAGCTT 68248 29 100.0 33 ............................. GAATATCGGCTACACAACTAGAATCGTATCGCC 68186 29 100.0 32 ............................. TCTTGCGCTAATCGCTGGTGTTGTATCAAACT 68125 29 100.0 32 ............................. CAATCCAAGCCTCTGGATAAAAAAATACTGAT 68064 29 100.0 32 ............................. CTCTTTCAGCAATCAGTTTTAATCCAACATAA 68003 29 100.0 32 ............................. AACTGGCTCTATGTAGAAAACTAGGTAAATGC 67942 29 100.0 32 ............................. AGTTGCCAGAAACCCTTACTGATTGCGTTGTA 67881 29 100.0 32 ............................. CTATTGATGAGTATGTGAATGAAATTGATTCG 67820 29 100.0 32 ............................. GTTTAATTAAAACGCTGGCTATAGTTAAAAAC 67759 29 100.0 32 ............................. CCAACTTGATGACCATTAAAATCAAATTTAAT 67698 29 100.0 33 ............................. GCAGAATGTAATCAAAACAGAACTAACAGATTG 67636 29 100.0 32 ............................. TGCTAATGGTTCTGCCGTACACGCCAGTTACA 67575 29 96.6 32 ............................A AATAGCGTTAGCACGTAACCGAGCCATCAATC 67514 29 100.0 32 ............................. TATTTATAAAAATACCAATAAGAAATGTAGAT 67453 29 93.1 32 ............G...........A.... AACGCTATCAAACAGCACGAGAGCGACTTAAT 67392 29 93.1 33 ............G...........A.... ATTTCGATGTTATCCCCGTTCATGATGGCGAAA 67330 29 93.1 32 ............G...........A.... AGCACAAAAAAATGACGACGAGAACGAAATAA 67269 29 93.1 0 ............G...........A.... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.0 32 GTGTTCCCTGTATGTACAGGGATATACCG # Left flank : CTTATTGAAGAAGTTTTATCAGCCGGTGGCATTGAACCACCGCCACCTCCAGACAATGTTCAACCCCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGAGTCGCTAATAATGAGCATGTGTGTTGTTGTAACTGAAAATGTTCCGGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCTGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTATTAAATTTGCAGAAGACGGTAATGTTGTCCTTGCTTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACAAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATTTTCTTTAAAAATTAGAAAAATTTGGTAGGATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : ATAGAAATTTCATTGATGTTTTTATCAAATTTGATACAATTATTAAAAATAACAAAACAGATTGATTAAATGTTTACGATAAAAACGCATGATGATGCTAAATCTGAAATTCTAGATTTACCCGCAGAATTAAGAGGTCGAACAATTAAATTGATTGAAAAACTAGAACAATTTGGACAAATGCAAATGCCACATAGTAAATCGTTGGGGGGAGGGTTGTTTGAATTGAGAGCGTTAGAGCGCAATAATATAGCTAGAACTATTTATGTTTATCAAAAAGAGCAAACGATTTTTATTTTACATGCGTTTGTTAAAAAAACACAAAAAACACCAGTTGGCGCAATGCAAATAGCGAGAACCCGACTGAAGGAGATGATTGAAAATGAATAAAAAACACAGCACAACATTTAGTGAAATCAAAGATATCGCGCTAGCAGATCCTGTAGCGCGTGCGGCATATGATGATGCAGAGGACGAGTGGAAATTACGTGAATTATTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30282-30551 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000086.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30282 29 100.0 31 ............................. ACTTTATGATGATAGATTAATTAAGATCTTG 30342 29 100.0 31 ............................. TCGGTCAGTTTCACTCATGCTATTTTGCTCA 30402 29 100.0 31 ............................. GCCAGCAAATTCAAATTGCCAGTTAAAATAA 30462 29 96.6 32 C............................ TACACGGCGGTAAACTAGAAACGAATATACTA 30523 29 93.1 0 T...........................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 AGTTTAACGCCGTGTAGGCGGTTTAAATG # Left flank : ACGCAATTAATAGGTAAGCTCTCGGCTTTTTAGATAGCTTTTTATAATTAGATTGGCTATGATTGGCGTTGTCAAAGCACCAATTCAAGCCCTCGATTATTTCTCGATATAGAGGGTTTTATTTTATAAAATACGTAAAAATTTTTGGTCGGTATTTTTGGCGGTATTTAAAATAGGTTGGTTTTAAATATTTATATTGTTCAATGAGTTGATTTTTGTTTTCGATTCCTGCTGGGGTCAAAGCCCGCCGAAACTGGCACGGTTTTACATTGATATTCGCAATAAACTTTGATGCTCACTATAAATCAATTATAGTAAATTTTGTTGTATAGTAAAAATTACGCCTTATCAAATTATCTAAAGCTTTATCCCCCCTTTTTTTGAGCTGTAAAATAAAACAAATAAAAACATTGTGTTAGTGATTTTTTGCAAAAAGGGTTTTTAGAGGCAAAAATCCTATTTGCCTTTTGGCAAACAAAGTTTATAGTATGTTTGTTTCT # Right flank : TTTTTCTTTATTGTTATATAGATCATGCCTGCCACTAATATATAGTCGTATTTCGCTAATTAAAAATTAAATAAAATCAATGGGTTTTCTGAAAGATTTTTATATTTATTTTTGTTAGTTAACTCACATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAATGTGCCTTATGTTGCTTTTTATCTATAAAAGCAATATTTTTTTATTAAAAATTTTATACAGAAAGTTAAAATAGTCAGTAGAAAGTTATTACGTATTTTTGAAAAAAGCTTTTAATTAAATTTGATGATAGAGGTGGAATTTTTATTAGTATGATTTTATACCA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAACGCCGTGTAGGCGGTTTAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 20945-21572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHO01000083.1 Gilliamella apicola strain Nev5-1 Gilliamella_apicola_Nev5-1_contig84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20945 28 100.0 32 ............................ ATTTTCTGAATTCTTTTGCGATTTCAGTGTTA 21005 28 100.0 32 ............................ TTCGCTTATATCACTAACGCCATTTTTGAAGC 21065 28 100.0 32 ............................ TATCTTTGATATCTCGGTCTGGCAGGGATACC 21125 28 100.0 32 ............................ GTTCGGCTATCCGTTGATGGCGGCAGGGCTTG 21185 28 100.0 32 ............................ ATTATAACTACACCAAATATTGCAATACCGTA 21245 28 100.0 32 ............................ TAATTTTGACCCAAAGAGAAAAGTAGGGACTG 21305 28 85.7 32 .........T.CA..A............ AAAATTAGCATATCGATATCATGCGTTATCAT 21365 28 89.3 32 .........T.C...A............ ATATCATCAGACAAAAAAGTAAGCCCTGTACT 21425 28 89.3 32 .........T.C...A............ TCCGCTTGTGCTTGCTGTAGCGCTGCTTGTGC 21485 28 89.3 32 .........T.C...A............ ACTTTCATTTACTCTATAAGCTTTCCCAACAT 21545 28 82.1 0 ...T.....T.CA..A............ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.2 32 GTTCACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TACGCAAGAAATCAGTACGAATTTTCTCACTTCGAGGAGCGCATCTAATCGCAATGTTTGCTAGTACAAATGTAGCAAAAGAAGTGCGTAAATGGTTGTTAGATTTAGCTGATAAAGAGGCAGGTCATTCACAAACAAGAAAAGATATGATTGAGGTAAGTAGAACCAACCTAATTTGTTTAGTTCATCACATGCTTTGGTTGAACGATTTCTACATAGATAATCGTTTATATGATGTTTTTAAAATGCTGGGGTCTAATTTCGGTGTAAGACTTCACGATCATTTTGGCGACGGTGCTTTTGTTGCTTCGATGTTTAAACAACAGCTAGAAAAGAAACAATTACGGCAAGTATAAGTTAAGGAATGTACAACCCTTTTTTTAATCGCTTTTATAATCTATTGAAAAATATAGATTAATTTAAGAGCTAGAAAAAAGGGTTATTTTCGAAAAAATGGTTAAATTTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTA # Right flank : AATTACCGAAATTATTAAGGAGATGGTATGAAAAAGATTTTATGTTATTTAATTTTTTTTCTGTGTTTTATTTCATTTATCTCAGAGGCTGCTGGGAAAAAAGAAAAATTTAAGCCCGATGGGAAAGAATTATTTATTATTAACGAATATGCTCCAGTAGCTCGTATACAAGTACATACAGCCCCAGAGGTTGGAACATCCAAATTTTTACCCATCGAAAAATATAAAGGCATGGTTGGGTATGTTGATAAAATAATTAAAACTAATTACGATTCTTATAAAAAGATTGTTTTGAAAAATGGAGATGTTTTTTATTTAGATAAAACTTCATTCGGAACATCTGAACCAAAGTATGAATCAGAAGAATATTTAATTAGTATGGGGGAATATGAAAAAGTAAAAAATAATATTGAAGAAACAAAAAAAATAAAACTTTATAATATAAGTGATATTTCTATCAAAACAGTAACAGCAGGCAAAGACGGTATTTATAATGTTAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : GTTCACCGCTGCGTAAGCGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //