Array 1 48306-45959 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXB01000014.1 Hydrogenimonas thermophila strain EP1-55-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 48305 29 100.0 34 ............................. TCATAGTATGTTTGGTCGCCTATTGTTGCAATGA 48242 29 100.0 36 ............................. GGTGGGCGAAGCTATCTAAGAAGAAATGGGCATATA 48177 29 100.0 36 ............................. ATAGTCATAGTTCCTTCAGCTTTTACATCTATAAAA 48112 29 100.0 34 ............................. CCTTCACATCTTCAACACCTGGAAGAAACTCATA 48049 29 100.0 36 ............................. AAGGTTTTGCAGACGCTCGAACAGCTCCAACCACCA 47984 29 100.0 35 ............................. ATGAACTATACGCTGCTACTGGCTATGTGGGCTTT 47920 29 100.0 35 ............................. CTATGCGATGCTGGATGGGAAAACATCAACTCAGA 47856 29 100.0 35 ............................. CTCTGTTTTTACAAATAGTCATCCTGCAATCTCCA 47792 29 100.0 37 ............................. TGGATGCTGGTCTGTTTGAATATTTGAAGGCTATCGT 47726 29 100.0 35 ............................. ATGGTAGCCTCTTGGAAAGCGTAATCTTCACTACT 47662 29 100.0 35 ............................. CACTTTTTAAACTCATTTAATCTCCTTCATATTGA 47598 29 100.0 35 ............................. TATCAGCTAGGTCACTGACATCCAAGCCAGTATCC 47534 29 100.0 35 ............................. TTGTCTACCATCCACTTTGGTGCTACCCATTCACC 47470 29 100.0 35 ............................. TCTAAACTAGTGGCGGTTGTCCCCTTGATATTCGA 47406 29 100.0 36 ............................. TCATAATATGTCTGATCATCTATCGTATCAGCAACC 47341 29 100.0 36 ............................. TGGCTACAATAACAGCTACTTTTTCCGTTTCAGCCG 47276 29 100.0 33 ............................. CGGCTGGGGTGGTTCTGTGGTTCCACGCAAATG 47214 29 100.0 37 ............................. CTAATTGCAGTGGTGGCAGTTGTACTGGTCTGATTAT 47148 29 100.0 36 ............................. GCTCTATCTCGCACACTCTTTTTAATGACGAATGTA 47083 29 100.0 34 ............................. CGATGAAGAGTATTTTAAACAGCTAACGAGTGAG 47020 29 100.0 34 ............................. AAGTAATCGTCCGACATAGTTAGGCTTTTTTTTG 46957 29 100.0 38 ............................. CTTTTTCGTTTTTCTTGCCATCTTTAAATTCAAAATAC 46890 29 100.0 36 ............................. AACTTACCATTGCTATCAAAAGCAGATACACCAAAT 46825 29 100.0 38 ............................. ATTTATTGATCCACGCGCCTATTATCCTGCCTATCTCA 46758 29 100.0 34 ............................. TGCAAAGCTAGATATTAAAAAGTTTTTCTACAGA 46695 29 100.0 38 ............................. CAAAGTCATCAACATACCTAACATAATGTTTTATCTTC 46628 29 100.0 35 ............................. TAGGTCACACTGTTTCTGTCTGTACTCATCTCAAA 46564 29 100.0 36 ............................. GCTATTACCAAATCGCTGACCGTGGGCAGATGGCGA 46499 29 100.0 35 ............................. CTATCTTTCTAAAATCTTCTCTTCTTTCGGGGAAG 46435 29 100.0 35 ............................. AAGAAGCCAGAGCAAAAGTACCTGTGGATACTGGA 46371 29 100.0 37 ............................. CTTTTAAAATATTCTCATAATAGAGTTTGTCTGCAAG 46305 29 100.0 34 ............................. TAGGTCTGTCTAAGCGTAATAACTCTTAGCATTA 46242 29 100.0 35 ............................. CAATAGCCTTCAAATATTCAAACAGACCAGCATCC 46178 29 96.6 36 G............................ TTTTGCTAATGCTTTTAATATATTAGAGCATTTATT 46113 29 96.6 34 G............................ TTGAAATAGGTATTCTTGGATTTCAAGGACTTAC 46050 29 96.6 34 G............................ TACGGACAGGCGATGAAAGAGAAGTTGGAGGAGC 45987 29 89.7 0 G..........T.........G....... | ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 35 ATTTGAAGTATCCCTATGGGATTTGAAAC # Left flank : AAACTATTGCAGATTATCTATGCAATCTATGTGCATAATACACCTTATGATCCTAAGAGAGTATTTGTTGCACAACCAACAAAATAGATAGCACTTCCTCTTGATTGTATTTGTGCCATTGACAATGAATTGTTAAAGAGCTAACACAACAACAAAAATCAAACTATATCGGCTCTATTAAACTACAAGCCGATACCTTGTTAGTGTTATTGATGAAACTTATGTTTCATCATCAAAACACTTCGCAGTTTTGAAGTGTTTTAAAAATGAAACAAAAAGGTATGTTTTTTTTTAAAATTTCAGCCGTTTAAGTTGTTTCTTATAAAACGGCTTT # Right flank : TGCCTGAAACATTTCTTACTGAAAATGAGCTAAATAAGCGACACTAGAGGTTTACTTTTTTAGGCTGTTTATCGGTGAGGATATTATAGAGTTAAACTGAAAATCGATCAAAACTCTTAGAAAAAAAGCATACAAAGAGATACTAAAAAGGATAATTGAGAATTGAGTTATAGTTTTATCCATAATTTCTGCTATAATTTTTATAGTTGAAACTATAAAGGAACAGTGTGTTAAATAGATTAAGGCTTTTTCAAAGTGCAATTGTTAGAAATTTAAAAACTACGCATAAAAGATATTTTTACAATGAGTTAAACAATAACGAAAAGCTTTTGGCAATTATAGGAGCAAGAGGTGTTGGTAAAACTACTGCACTTCTTCAATATTTAAAAGAATCAGAAATCTTGGCAAATGAAAAACTATATATCAGTGCCGACTGGATTGATGGGGAGAGTCTGTTTGAAATTGCTGAGGCTTTTTATAAAGAAAATGGCAAACTGTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAAGTATCCCTATGGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 29680-28877 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXB01000027.1 Hydrogenimonas thermophila strain EP1-55-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 29679 29 100.0 39 ............................. TCTTTTCAGCAGTATCAACAAACTGCTCATTTTGTGTAT 29611 29 100.0 35 ............................. TTAGTCGTTTTCCTACAGAGATACATTCAGCTACA 29547 29 100.0 34 ............................. TGAACTACAAGGTCTCGAAAGTGCGGTGCGTTAA 29484 29 100.0 34 ............................. TTTTCTGACAAACTTCACGCCTCTCCAAGTTCTG 29421 29 100.0 35 ............................. AACAAGCTCTTCCCGCTCCTTTTTCTCTTCGCGTG 29357 29 100.0 38 ............................. ATTGAGCCAAGTGACTTCACGACATCGCCCTTGCTACC 29290 29 100.0 36 ............................. TCAATTAACTGTCTATGCAGCAAAGTATCTGTCTCA 29225 29 100.0 34 ............................. TTGCTGACACTATAGATGATCAAACATATTATGA 29162 29 100.0 35 ............................. CAAGTCCAAAATGACTCCTGAAGAGTTGCAAAAAC 29098 29 100.0 35 ............................. AGAGATGGGACACGATCTGCACTCATTTATAGAGC 29034 29 100.0 35 ............................. ACTGAAGCGAATATTTGTATCAAAGTATCTATCTC 28970 29 100.0 36 ............................. AGTAGATGTCATAGCCTACAGACCGCAAAAACCAGC 28905 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 13 29 100.0 36 GTTTCAAATCCCATAGGGATACTTCAAAT # Left flank : AACATAACTCCTTCTTGATTGCTTGATATTTGGGTTGTGCTCACAGCCTCCTAACTCTATAGAACGGTAGAACATAAGCTCTCCAATAGCGTTTCATAGGTGAGTTAGCTAGCCCAAATTAGATAGGCTTTGTTGGGTCATCTTCTGACAAGGACAAACAGATCTTTAATTTGTGCCATTGACTGTGAATTGCAAAAAGCAGCTAACACAACTGTCTTTATGCTAACACAACTTTTATAACTTTTTCATCCTCTTTTGAGTGATGAGAAGTTATAAATGTATTATAGGAGGATAAACTATGAGTTGGTTTGGTGATGTA # Right flank : AGCAATCTATTACCTATTTTTAGGCATTTCAGAACTATTTGATTATAAGATTATACCTTAAAGTCACTTGATTTCAAAACTTTCTACTATATGAAACCCCGATATATCGGCAATCTTTATTTCTTAAATATAGCTTTATTTAGGTTCGCTTTGAATGAATGGTTGGTAACTGTCGTATTCACAAATACACCGTTTAAGATGATTAATTTCTCGTCTTATTACCTGTCGCCAAGTGAGTCTTTGTTCTCCAATTTTGATCTGATCAGTCAGTTTTTTGATCATCTCTATTTCAATTGTTTGAATGGCTTCATTAGTAAAACGTATGCGTTTGGCATCTGTTTTAAATGTTTTTGCTGTAATCTGTTCACGATTTAAGAGAGTAAAAATTAGATTATCTCCAATTACTGGCTTAAAAATCTCTGCTATGTCTAGATGCAAACTTAACGCACGATAGTTGGGTTCGTGCAAAAAGCCAATACGTGGGTCAAGTTCGGTTTTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCCATAGGGATACTTCAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //