Array 1 2406654-2405633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054504.1 Flavobacterium columnare strain F2R62 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406653 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406587 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406521 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406455 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406389 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406324 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406259 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406194 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406128 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406062 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2405996 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405930 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405864 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405798 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405733 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405668 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975654-2973260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054504.1 Flavobacterium columnare strain F2R62 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975653 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975639,2975650] 2975581 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975515 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975449 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975384 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975275 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975263] 2975204 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975138 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975072 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975006 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974940 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974874 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974808 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974742 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974676 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974610 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974545 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974479 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974414 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974349 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974283 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974217 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974151 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974085 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974019 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973953 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973887 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973821 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973755 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973689 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973624 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973558 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973492 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973427 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973361 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973295 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //