Array 1 22941-23108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPP010000001.1 Pseudoflavonifractor sp. MSJ-37 L-48_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 22941 33 100.0 34 ................................. ATCCCACTCCTCCACCTGGCGCATCATGTCCAGA 23008 33 100.0 35 ................................. TGAGGCCGGCTGGGTGGAGTCCTGCGTCTACGACG 23076 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 35 GACGCGATCTGCGTGGAGCGTACTGAGGCGAAG # Left flank : GTGGAGGTGCCGACCTCGCTCAGAGCAAGCCAGTATGACCATCTATCCGATACCTATACGAAAAAAGAACTGTCCCAGCGTTGGAATGATATGCCGGACGGGAGACAGATCCAGCGAGACCTCTACTCCGCGTTCCTGCTGGAGCATTGCATTCCTGAAACAGCAGCATATGATAAAGATGCCCTTCGACAAGATTATCCTCGATTCATTCGATATCATGACCAGACGATCCAGCGATTGGCCGCGATGCCAAAGACCATCGCCAGTATGGGGATCAGGCGAACCAGAAGTGAACAGATAAAACCGGTGTGATCCGCACCGAAAATGACCGGTCGATCGTCCGTCCGGGGCTGTCGGTAATGGCGGCATAGGCCGCCTTGGCAGCAGAAGAGTTCGGGAACATAGTCAGCGCAGGCAGTATTTTTGACTGCCTGAAAAGCTATCTACCGACTCACAGTACATTCCACAAAATGAGACGCTGCCCTTTGTGCATTTTTGCT # Right flank : GACGTGGCTGTATCTGTGAGGGCCCACCTGCGGGAGACGCGATCTGCGTGGAGCACATTTTATATTTTCAAAAATATCATCGCCCGCCGGTCCGTATGGGGCCGGCGGGCGATGTCCTGTTCTGATCTAAGATCTCACCGCGCCTCCGGCGGGACCGCCTGATCCATACGCGCCTTGATGACGGCGAAGATGTCGAAGCCCTCGCCATATTGGCGGCGGAGCGCCTCCTTGAAGAGCCGTCCGCCGGCTTTCCCGGACCGGCCTCCGCCGGAGCCGACACCGGCGCAGACCGCCGCCGCCAGACGCTCCGCCTGGATGGACTCGTCACAGGTACGGATGGAGATCTGATAGCTGATGTCGCTCTCCGTATAGGCGATCGTGGCCCGGATCTGGTCCACCTGGATCACCAGATCTCCGAGGATGCCCAGCACCACCTGCTCACAGTGGACCGCGGGGATGATGGCGTAGCATCGTTCCGTGTCGAAGTAGTGGTTTTGCAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGCGATCTGCGTGGAGCGTACTGAGGCGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 251581-253865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPP010000001.1 Pseudoflavonifractor sp. MSJ-37 L-48_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 251581 28 100.0 33 ............................ CGATTCGCTCGAGGCGATGAGTCCGTCCTTTCC 251642 28 100.0 33 ............................ CAATCGGTCAAAATATTTAGGAGGACGAAACTT 251703 28 100.0 33 ............................ CCGGAGAGGAGAAGCCTGTGGAAAAGTGGTACG 251764 28 100.0 33 ............................ TTCTATTCGGATGTAATGCGTGGGCGGGTAAAA 251825 28 100.0 33 ............................ CAGCAGGAACTATTGTACCCGCACCCGTAACCG 251886 28 100.0 33 ............................ TTTGCGTGCGCCTGCGTCTAGAGTCGGACGAAC 251947 28 100.0 33 ............................ GTACGCCCATTGTGCTGACCGGGCGGCGGAGCT 252008 28 100.0 33 ............................ CATCAGCCCCGGCGGGCTGGTGCGGTACAAGCG 252069 28 100.0 33 ............................ TATGCCGCTAAAGTGAAAGCTGTATGCGAAGAG 252130 28 100.0 33 ............................ TTCGAGAAGGGAGCCTTCACCCGGGAAGAGGTC 252191 28 100.0 33 ............................ TCGGTTTCATATACACTCCCCCTTCAAGCCGTT 252252 28 100.0 33 ............................ GAGAGGTGGCCCCCGTGGAGTGGACCATCGTGA 252313 28 100.0 33 ............................ TCGAAGCGGCCTTATGATGACATCGTGGAATGC 252374 28 100.0 33 ............................ CACCAGCGCCGCCGCCGCCGCCCGTGTCATCAC 252435 28 100.0 33 ............................ CGGGCCATCGACACGGCCCTTGACGAACGGAAG 252496 28 100.0 33 ............................ CTACCAGAAGCAAGCGACGCTGGACTACACCGG 252557 28 100.0 33 ............................ TGAGGACTGGGGCGGCTCCTGCGCCGCTGCTGA 252618 28 100.0 33 ............................ CTCAGGGACGCCGAAATAGATGCACAGGGGGCC 252679 28 100.0 33 ............................ CTCCTATATTGGCAATACCTTCCACGGAGTTTT 252740 28 100.0 33 ............................ GCTGGTCTGGGGACTTCCCCTGCATCAAACGCA 252801 28 100.0 33 ............................ CGGAGATCGCCTGCATCGGCTGGTGTATCCTGA 252862 28 100.0 33 ............................ CAGGGCCCGCCGTAGCTCCGGGTCGTCCTCCAC 252923 28 100.0 33 ............................ CGATGACATAAACGGTCGTGATAGGAGGAGCAC 252984 28 100.0 33 ............................ CGGTCTGGCTGGTGGTCTGGGTGGAGTTGGACG 253045 28 100.0 33 ............................ CTCTTCTTTTCGAGCAGGAGGATTTGGACCTTA 253106 28 100.0 33 ............................ CTACGATGACAGCTATCGGGTGGACGCGCACTA 253167 28 100.0 33 ............................ TGATGCTCCTGTCCTCCGACCGGAAGGACGGCA 253228 28 100.0 33 ............................ CGACCGCTATCCCCTATCGCCCGCTCCATGATG 253289 28 96.4 33 .......................A.... TACGGCGTGGACCTTTACCGCGAGTGCTACGCC 253350 28 100.0 33 ............................ CACAGGAGGACCACAAAATGAAAACCGCCGGAT 253411 28 100.0 33 ............................ TACGCCCTGATCCGCAAGTACATGGATGAGAGC 253472 28 100.0 33 ............................ CTGTGCCCCCGTACCGTCATCTCTCAGTCTGTG 253533 28 100.0 33 ............................ GGCTTATGGAGGGTATACAGATCGCCCAGAGCC 253594 28 100.0 33 ............................ CGCCTGAAGGCCGCAGCTTTTCCACTTGCTACA 253655 28 100.0 33 ............................ CGTCATACAACAATCCCGCACTGCAATGCGGGG 253716 28 100.0 33 ............................ CGGGCAGGGACTATGCATATCATCATACAACCG 253777 28 100.0 33 ............................ GGTATCTGCGCTGGTGCCCTCGGTGATGCCCTT 253838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.9 33 CTATTCCCCGCACACGCGGGGGTGATCC # Left flank : AACAGGACGAGATCCTGGAGTTGGGAGCGGTCCGTGTGATCAGCCACAAAATCGCGGAGTCGTTCTCCGCACTGGCCCGCCCTGTGCGTCCGATCCCGGATGAGATCACAGCCCTGACCGGGATCGGACAAGAGATGGTTTTCAAGGAAGGGAGAGAACTGTCGGAAGGATTGGAACGGTTTTGGAAGTTCATAGGCGAAAGCACTGTGGTAGGTCATAACCTCTCGTTCGACCTCGCTTTTCTGAGAAAGGCGAGTGTGCAGACTGGGATCTCTATGCCGAGGGTCTCCTATTGTGACACCCTGCGGCTGGCAAGAAGAGAGGTACGGGACATACCAGACTACCGGCTGGAGACGCTGGCGGCTTATTTCGGAATCGAGACAAAAGGCAGGCACCGAGCTCTGGAGGATTGCATCACGACCTTCCGGGTCTATGAGAAACTGAATGAAAACTGACTGCCGAGGGATCGAAAGCCCTTGATTTTCAAGGCTTTTTTTAGC # Right flank : CCACACACACGGGAATGATTTTGGCTGAACGAGTCAAGAAAACAAGAAAATATGGCATGATCGGCGCGGCGAGCAGTAGTGTAATGGCAGCACGCCTTGTTTGAGACAGTCCCGGTCCGATCCCGGGCGCTCGCTATGCTGTGGGGGCGATCCATCTGCAAAAAGAACAGTATCGTTCTCATCAGCCAAAGATCTCGGTCTCATGTCCTCGCCTCGATCTTCTTTCACTGTGCGCGGCCGGGCACTCCTCGCGTCCATATCCTCTTGACATTTCTCTCCCGCTCCCCTATACTGATAAAGTTGAACAGCGACGATGGGGAGGAGTACCCGTCTTTCTGGTGCAGAGAGGAGCCGGTCCGGTGCGAGGCTCCCGAGGAGAGCGGAGAAGGTCGTCCCGGAGCCGCGGCGCGGAATGGAGTAGGCGTCGCCGGAAGCCCCCGTTACGGGCAGGAGCGCGGCCCCGTTTTTTCGACGGGACCGAACTCAGGTGGTACCACGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1150360-1149929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPP010000001.1 Pseudoflavonifractor sp. MSJ-37 L-48_ctg0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1150359 33 100.0 34 ................................. GTGAGATCGGCGGGAACTGTGAGACTGTCTGCGT 1150292 33 100.0 33 ................................. CTCCAGGCCACGCAGTCGATGAAATCGGTGGTC 1150226 33 100.0 32 ................................. TATCTACCGGGATCGGGAAGGCGTATATCCAT 1150161 33 100.0 34 ................................. AGCGTGAGGGATAATGACATATCGGCCAGGCTTG 1150094 33 100.0 33 ................................. TCCTCCCCGTCGTAGTGCTGGCCTTTGAAGACC 1150028 33 100.0 34 ................................. ATCGTTTCGGACAGCAAGGAAAATCCCATCGGCC 1149961 33 93.9 0 ....................T......C..... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 99.1 34 GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAT # Left flank : CCCACCATTTTTGTGGAAGTGAGGGCTTATGCTGGTACTCATTACGTATGATGTCAACACAGAGGACGCCGCTGGGCGGAAGCGTCTGCGGCAGATCGCCAAGCAGTGTGTAGATCATGGCCAGAGAGTACAGAACTCTGTGTTCGAATGCCTGTTGGATACAGCTCAGTGCCGTAGTCTGCAAAGCAAGCTCTGTAAACTTATGGACCCGGAACGGGACAGCCTGCGGTTTTACTATCTGGGGAAGAAGTATGAGAGCAAGATCGAACACTTTGGATGCAAGCAAAGCTACTTGCCAGAGGATACGTTGATGGTGTAGTGCGAATGGCAAGCGCACAACGATCTTCAGGGAGGTTCGCACTGGCAAATCATTGCGACTGCCAGAAAAGGAGATGAGACTTGAGCGGGTGATGTGCTTTGACAGGCGGTATATTGCCGGAAGAAGAAACGATTTTGCCTGTTGTGACAAGAACGTACAGGGAAATTTGTGCGTTTTTGCT # Right flank : TGAATAAGGACAGATACCACAATATTTTATTGGTTTTTCCTACCGTCGCATTACTACTGGAAAACGCCAGAATGATGCAGAAGTTTGTTTCGGACAATGAGTTGAATTACCAAATTGTCAAAACCGTCGATGTGACGATTGATGATGAAACGAACTACATATTTGTTTTTACTCCAGAGTGTGCACTACAGCTAATTGTAGCTTTTCCAAATTTGAGAATAGATTTCTTCTTCTTTGATGAGGTTTACAAAATTGACGAAGATTATTGTGCTGATGGGACTGAGGAAGACGAGGATAAGAATGGTTTAAAAAATCTACGGAAATCCAAGGCGGATGCTTCTTCACAAGAGTTTCTCAATGAGGACAGAGGAAAAACTTTTAGAATAGCATTATAAATACTCTAATGGTGATCCTTACAGAGTGATATTTTATAATGATATTAGTGATAATGATTGGCCGAAAATTACGGATGAGATTATCACCAATATTATCACAGAATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //