Array 1 388551-388322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHFB010000006.1 Halorhabdus rudnickae isolate WSM64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 388550 30 100.0 36 .............................. AGTGGCTCTGTCGTCTGTGCAGACGCGGCCCCCGCG 388484 30 100.0 35 .............................. ATCAGTTCCGGCCACAGTTCCTTCACGGCAGCACG 388419 30 100.0 37 .............................. CGTTGGTTGCCATGGGTTCTGCGTGTTGCTTGGAACC 388352 30 96.7 0 ................T............. | C [388337] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTCAGATGGACCCTCGTGGGGTTGAAGC # Left flank : GGTGGTGGGGGTGGGCGACAAGGCGCTCTTGAGAGTGCCCAGTTGTGCCGCCGGTGGCGAGAGATTCCTTCGACCGACACTGGGACTGTGCCCGTACCACGACGACCAACAAGCGTTTCATCGACCCCCCGGGATCTGGGGGCTATTGCCGGTCGACAGAAATCTCGATGTGTAAACCGTGTTATTGCCAGGGTAAGGCCGGTGAATCGGCCAT # Right flank : AAGCGGGAGGTGCTACGGAACGAAAAGACCGGGAACAAGTTTCAGACACGCTCTTGTGCGAACTTACACACCCGCGACCCACGTGATACTCGGCCTCCCGCGGCTGGGCTTTGCGACCGTGTAAGGGTCCATCAGCGAGCGCGTATAATACGGCGGACACGTCCCCATCGTGAGCGTGGCTTCGAGCGTCCACGCGTTGTGCGGGCCAACAGCAGGCGCGAGGGCGTCGACGCCCGCGCAACGCGGATGCGCTTCGATCGCGGCGGCCGCGTTGTTGACACGCTCGCGTGTTCGACGGTACAGGGACTCATCGATGGGGCTCCAGCAGATGACTGGCGGCGAGAATCGAGATCGTCAGCATGATCCCGGCGTCGGGTCCTTGGACGAGGTAGACTGCAGCCGGGCCGTACAGCGCCGCCGCGACGAGCACGACGACCCTGACGCGGTCGCGGACGGTCGCGTTCATGCGTCGACCTCCACGGTGCGGGCTTCGACTCGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1353971-1355456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHFB010000001.1 Halorhabdus rudnickae isolate WSM64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1353971 30 100.0 36 .............................. CCAACGCGAGGAAGCCCCACAGTGCAGTTACGGGCT 1354037 30 100.0 38 .............................. GAGCGCGTCGTGGATCGCCTTAGTGTCCTCGTCGACAA 1354105 30 100.0 35 .............................. TTCCACAACCATCTCGTCAGTCACTCCAAGTTCCG 1354170 30 100.0 36 .............................. AGGCTTACGTTGACGGGGACAACCAGTCGGCAGCGA 1354236 30 100.0 36 .............................. TCGAACTCAAACGAGGACGGTGATTCCAACATGATA 1354302 30 100.0 35 .............................. TTCGCTAAACCCGCTGTCAGCCCCGACAGGGTAGA 1354367 30 100.0 36 .............................. CTCCCCGACGACGGCCTCGAGAAGATCAAGGCCCAG 1354433 30 100.0 34 .............................. CTCGTCCTGCTTGTCCTGACTATGCTCAACTAAA 1354497 30 100.0 36 .............................. CATATGATCAGCCAGCCGCTGATCAGCCTCGGAATC 1354563 30 100.0 36 .............................. CGCGTAGTACCGGGCGCGGTCTTCGGCGACGATACG 1354629 30 100.0 37 .............................. AAGCCCTGCCTCACCAGTAACACTCGGCTCCCTTCGT 1354696 30 100.0 38 .............................. ACGATCTGAAGTGCCACTGTGTGGCGGTGTGTTGGCGG 1354764 30 100.0 36 .............................. TGGTATGCCTGGATCGCTCTCGGCTTGCTGTTCCTC 1354830 30 100.0 37 .............................. CAAGCTAATCTGTATCCCGACGGTACTCCTCTTAACG 1354897 30 100.0 37 .............................. CAAGCTAATCTGTATCCCGACGGTACTCCTCTTAACG 1354964 30 100.0 37 .............................. CCGACGAGGCGGAAGACGAGGCGATCGGAGGTCACAT 1355031 30 100.0 36 .............................. CCGGCACTCCAAGACACGCTGGCCCAGCAGCCGGCG 1355097 30 100.0 36 .............................. GAGCGCGCTGTACAGCGCAACGTCGGAGTACCCCGC 1355163 30 100.0 36 .............................. GAGCGCGCTGTACAGCGCAACGTCGGAGTACCCCGC 1355229 30 100.0 37 .............................. CGGTACAATCTGGACCTGTTGATTGTGTCCAACCCGG 1355296 30 100.0 36 .............................. CCAGTCAGTCCTTCCAGCATGCCACCGACCCAGACC 1355362 30 100.0 35 .............................. GCGATCGAGCGCCGTGTGAAGGAAGTCATCACGGA 1355427 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.9 36 GTTTCAGACGGACCCTCGTGGGGTTGAAGC # Left flank : AAGCAACGACGAAGATGGACGTACCGGGACTGAGCGAATCCAAAGGGATCGCGAGGGCCGCTGAGGGAACGAGACGAACGAAGTGAGTCGAGTAGACTCGGCGAGAAGTCCTGTTCGACACCATTCTGGTCGGCGAGTGTCCGAGCGTGGGTGGCATGAAGGGGCTCACCGACGGCGTAGGCGATGTTGTCGGCGAGTCCGTAGGATGTGGTTTAACGGCCAGTCTTGGGGATGGGACCGATTGAGCACGGGCGGCGGTGGGTACGGTCTGGTATTCGTAACTGGTGGTGAGACAGGTGGCGACAAAGGGATCTTGGGAGTGGGAAATTGTGCCGCCGGTAACTAGAGACTCCTTCGGCCGACGCTGGTACTATCCCCGTACCACGACAACCAACAAGCGTTTCATCGACCCCCCGGGTTCTGGAGGGTATTACAGGTCGACGACAATCTTGATGTGTCGTCGATGCTATTACCCGGGTGAGGCCGGTGAATCGGCCATG # Right flank : CGGTTAGACATGAGTTGGCTATAAGTTAGGCAGGAACAGTGTCAGACGGATCCCGGAAGATTCCCTCCGAGTTCAGTCGTGACCAAGACCGGGATCGCGCCGACATCGACGGCAGCAACGACACTCCCGTAGTTGCAGTTGCCTGTGCGATCGTCAGAACCAAACGCAAAAGAGCCAATCACAGATGTCAGTCCGATCCACTGTTAGCAAGATCGACCTCGGTCAAGCTCACGCCAACCACTCCTGTCCCCTGGCGCGCATCGACAGACATGGAGGGGCGCGTTCGGGCCCCGAACGAAGTCTCCCCTCACAGGGAAGATATGTTTTCTTGGAATCGGCCCCAGAGAGTTCCGAATGACGGAGAATCAGCACTCTGATGAGCCCTTGTTGCGGCAGTAAGTTCTGGATGGACTCGGCGGGACTGGGCAAATCCGGAGGATTTGCGAGGGTCGCCGAGGGAACGAGTGACTGACCGAGCGGAGCGAGAGAAGGAAACGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1706782-1705030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHFB010000001.1 Halorhabdus rudnickae isolate WSM64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1706781 30 100.0 36 .............................. CACCAACGAGGACCGCGGTTCTGGTCGGGAGGTCCG 1706715 30 100.0 37 .............................. ACTCAGTTTGGTACTATTGTACCAAACCCCCATACGA 1706648 30 100.0 35 .............................. GGTTTTCACGCGTGAATAAACGGGATCGGCCCGTT 1706583 30 100.0 36 .............................. CACCAACGAGGACCGCGGTTCTGGTCGGGAGGTCCG 1706517 30 100.0 37 .............................. ACTCAGTTTGGTACTATTGTACCAAACCCCCATACGA 1706450 30 100.0 35 .............................. GGTTTTCACGCGTGAATAAACGGGATCGGCCCGTT 1706385 30 100.0 35 .............................. GTCGTCGGGCCGCATCTCTTCGGGATTCTCCAGCG 1706320 30 100.0 36 .............................. TTGTTAACGCCCTAATCAGGACGCCGTAAGAGATAG 1706254 30 100.0 44 .............................. ATGTCCACACGCCTCCATCAAGTCGCGTCCTAATTTCAGTCCGA 1706180 30 100.0 36 .............................. GCCCAGCATCAGACGGTATCTTTAGTTTAACGACGT 1706114 30 100.0 34 .............................. AATCGGCCCGTCGAGTAGCGAGTCGTAGTGATTG 1706050 30 100.0 36 .............................. ATTTGCGTCTGACAGGTCGATCTCCTTCAAATGCTC 1705984 30 100.0 35 .............................. CCTGGATGTTACGCCTATGAGACTCCAACTCACTG 1705919 30 100.0 35 .............................. TAATGGTAGGATTTGCGAAAGAATAGCATTAGTGT 1705854 30 96.7 35 ............T................. GAAACCCCAGCGGTGAGAACAAACAGGTAGTCGTC 1705789 30 100.0 36 .............................. GAGAGACGCACAGTAAACCGATACCTCAAAGAGCTA 1705723 30 100.0 37 .............................. GTGCTCGACTGGGGCGGCATCTTGTCCGGGATCGTTG 1705656 30 100.0 37 .............................. ACCGACCCGGACGGTCACGGCAATACGCCGACGAACG 1705589 30 100.0 36 .............................. CACTGTCAATGAAGGCAGCCACATATGCTACTTATG 1705523 30 100.0 37 .............................. ACCAGACGTTGGTGTATCAAACCATGACCATGAATCA 1705456 30 100.0 35 .............................. CACGGACGTGAACGACAAGCCGACGACGGCCCGCA 1705391 30 100.0 37 .............................. TCCTGTGGCTCTGTCGTTTCAAATTCCCATCCGCATA 1705324 30 100.0 36 .............................. GCATGAGCCTCGCTCGTACACACGACGCCGTAAGTC 1705258 30 100.0 35 .............................. CTGACGGCCGTAGTAGAGGACGCCACCGATCACGA 1705193 30 100.0 37 .............................. TTGGACAAACTGACGGGGTCCGATGACGGGGCAGACG 1705126 30 96.7 37 .........................A.... TGGATCTCCTCGATCGAGCGCACGCCACGCTAGCGCC 1705059 30 96.7 0 .............T................ | ========== ====== ====== ====== ============================== ============================================ ================== 27 30 99.6 36 GTTTCAGACGGACCCTTGTGGGGTTGAAGC # Left flank : TCGATCGGACGATCGAACATCCCAGACTTAACCGAAAGGTAAGCTACCAGTACCTCCTCCGGGTGGAGGCATACAAACTCAAGAAGCACCTGCTGACCGGCGAATCATACGAGTCATTCGAACGGTGGTGGTAACGTGGTGTACGTCGTCGCCGTCTACGACGTTGAGGCCGATCGAACTCGACTCTTCTTGAATTTCCTGCGCCGATATTTGACTCACGTTCAGAATTCGGTTTTCGAGGGTGAAATCACAGAGGGCGATCTCGAAGAGATCAAGCAAGAACTTGATTCGATGCTAGAAGCAGGGGAATCCGTGATCGTTTATCGAATGAGTTCTGAGCAGTATGTCTCGCGTACCGTCTATGGTGAAGATCCGACGGACGACAGTCAATTTTTGTAGCCCTTCATCGACCTCCCGGGTATTGCGGGCTATTGGCGGTCGACGAAAACACTAACACCTCCTGCCACTTAGCAGGCCATATATGGCCCGATTTGGCCATG # Right flank : TCGAAAACGATGTACTCGTCGTTGCGATTGTCGCGGTTTCAGACGGACCTGCGCGGTGCGTGCGTCAATCGGTTCGAGATCGGACGCAGTCCGTGTCATGGCTTGCGTCCCAATCCCGTCGGAAGCTGCATAGCCCCACTTGACGAGAACGAAGGAGTCGCCCTCGGGCGGATCTAGTTCCACCCGGATCCACTCGCGGCACAAACGGCCAGAAGCGACGGAAACGAACCCTTCTGGTCGGTCACATCCCGTCTAGTTCGCCCTGCAGTACTGTCCACTCGCCGCGATCGAGCAATTCCTTGAGCATAGGTCGGAGATCGACGCCGGCGACGCCGAAGAACTTCTCGCGGCCGACGGGCGTCCGGAACCGCACGATGTAGGTGTAGTCGGTCGCTCCGAAGACCGTCAGAGAGGTGTTTGTCGCTCGATTTGTCAGCTCCAGGCGCGGTGTCGCGTCGACGTTGCCGGTGACGCGTGATCCGAGTCCCCAGCTGAGTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //