Array 1 2049537-2049790 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZK01000001.1 Haloterrigena sp. H1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 2049537 23 100.0 33 ....................... AGACAGGGAAGGAGACTAGTAGGTTAGGTGCTA 2049593 23 91.3 33 .....................CA CTGAGGTAGGGAAGCGAACCAGTTGGTTGGTAT 2049649 23 100.0 33 ....................... AGACAGGGAAGGAGACCAGTAGGTTGGGTGCTT 2049705 23 100.0 39 ....................... TCAATTCTTGAGAAATCATCGCGAAACAGTCATCCGTAA 2049767 23 78.3 0 T...A.GT..............A | G [2049772] ========== ====== ====== ====== ======================= ======================================= ================== 5 23 93.9 35 GAGAGTACATTTCGTGTGCTTTC # Left flank : GCCATGTGCTCGAGTTTGAGAGGTTGTAGAGACTCTCGTAGAGAAGCGTCGTTGCCTGTGAGACAGCTGCACGGTTGAGTGGCTTTGTCGACGGCCGGATTTCGATATATGTTCGTGACTCGAGGGATGTGGGTGTAGGCGTCGTGGGATCTACGTCTGTGATGTGTGACTGGGTACTCGAGTCGCTGTGATCGTCTCCATCAGGAATCGGACTCGAGTGTTGGGATGGTACAGTCGTCTCTTCAGTAGTCGGCGTGGTGTCTTTCTCTATCGCCATCGGTTAGAAAGAGAGTTAGATGCAGCCAGCGCTCAGATACTGTCCTCGAGAACGCTTCTGATACTATGACTCTCAATACCCGGAGAATAACTTCGACCTATATAAACGCGTGTTAGGGGTGAGTGAACTGTCTTTGTAGTCGATAGTCTAAAGGAGGGAAAGAAGCAGGTTGACGCTCGAGGTGCTAGAGTGTATCACTGAATATTGCTTCACGCTGCAGTGA # Right flank : AGCTGAACATCTGCGAGATCTCTTCTCTCGTTTCGAGAACAATTGTTGGATCAAGGTCGAGTTCGTACTCGTAGTACTGCCCCCCGCTAAGCCCTTGATTTCGTTCATGTCTGATCAAGAATCCAAGCATATGGAGATCAGATAAGTGATCTTGGATGCTTTTCAGCGTAGTAAGAGGTGTTGCACCGTAAGCATCCGCAACCTGCTCATACCCATCTTGGATCGTCTTCGACCGTGCTGGGACCTCTTTACGCTTCTCGAGCTTCGCGATCGTTTCCAAGATATACTGAGCGTGTTCGGTCTGGTCACGAATCCTGTTTCTCAGTCTCCCACGCTGGACAAGTGTACGTGCATCTTCAATGTGATCATCGCAGACGATGTCGTCTCCTTGCTTCTCAGTCACCTCTGCACCAACACGGAGGAGATCGATTGCTTGCCGTGCATTTCCCATATCTTGAGCAGAAAGTGCGGCAGCTTTCGCGATTGCCGAATCGTCACAG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGTACATTTCGTGTGCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 155762-160283 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZK01000002.1 Haloterrigena sp. H1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 155762 30 100.0 35 .............................. ACGCTTGACTATACAATTCCGAGCGGAGAGATTGA 155827 30 100.0 34 .............................. TTCGATAAGATCCTGTGGGGTCATGCCAAGATCG 155891 30 100.0 37 .............................. TGTTCCACCGAGTGTAAGCACAAGTCTCAAGAGAATC 155958 30 100.0 38 .............................. GGCCTACCTGAATAGTATTATCAAGTCCATCACCCCAC 156026 30 100.0 35 .............................. GAGCACGAGGGGCTGCAGTGTCTGCTCTGTCGGGT 156091 30 100.0 33 .............................. GACTAGCGGCCCAACTCACCGGCACTGAATGCC 156154 30 100.0 36 .............................. TCTGCAAACGGACTGATTTCAGTCGGCCAATGTGGT 156220 30 100.0 36 .............................. AGTATTATCGAATTGTAGGTATCCCTCGGTGTCTGT 156286 30 100.0 37 .............................. CGAACGGTTGGGCACTCATAGGCGTGTCTTACCCACC 156353 30 100.0 33 .............................. CAACCGAGAGTTTAATTTCTGAAAACGTGGATT 156416 30 100.0 36 .............................. CTCTCTCGGTTCGACGGCATCGTCACGATGCAGGAC 156482 30 100.0 35 .............................. AGGGGATCCCAGAATTGACCGACAAACGTCACCGA 156547 30 100.0 36 .............................. ACGATCCCGAAGGAACTGGCACGCTCGCGAGCCAGT 156613 30 100.0 36 .............................. TGCTAACGCTAACTTTACGACGAACGACGAGATGGA 156679 30 100.0 36 .............................. AGGTTGATCGGGAAAGGCATTCGGTTTGTGCTCAAA 156745 30 100.0 36 .............................. CGCGCGCGTGCGTTGTTGAATATCGCTCAGTCTAAT 156811 30 100.0 35 .............................. CTCTCTGAGGGTGATGCGAAAGAATACGCTGACGA 156876 30 100.0 35 .............................. GACCCTATGCAGGCACTCGCCGTCTCCGGGTCATC 156941 30 100.0 36 .............................. GACTCCATTACCCAAGATCGGGTCCTGGACTGTTGG 157007 30 100.0 35 .............................. TGTATCTCGTAGGGAACCCCAGGGTTCGGATTCGC 157072 30 100.0 37 .............................. TCCCGATCGGGCGGCTCGGCGCCGGGCGTCTATCGCG 157139 30 100.0 36 .............................. GACACAGTGTCAGTCGATGGTTTCGGTGGTGGCCTC 157205 30 100.0 38 .............................. AGACCTATATCGGTCCTCGAGTGAAGTCACGTCCAACA 157273 30 100.0 37 .............................. GAGATCGTCGTCTACTCTGGCGGGACCTCGAGCACAA 157340 30 100.0 38 .............................. GAGAATTGGTCTGGTAGCAGTTACGACCCCGATGAAGG 157408 30 100.0 38 .............................. CAGAACAGCCACTGGTCGCGCTGGGTGAGCTCGTCCGG 157476 30 100.0 35 .............................. ATCAAGTCGCCGAGACGCTCCTCGCAAACGAGACG 157541 30 100.0 35 .............................. TGCTCCCCGCGCTCCAGGGCGTCGGCGAGTTCCGG 157606 30 100.0 36 .............................. TCCGCTTCGATGACGACAGTCCGTTCGATCAAAATG 157672 30 100.0 36 .............................. GGAGATACCACATGCCAGCCCAGACGAGCAGGTACG 157738 30 100.0 34 .............................. TGTACCAGTGACCTCCTAGCTGAGGAGTTGACTG 157802 30 100.0 36 .............................. GTCACGCATGCGCGCGACGACGGCCTCGCGGACCCA 157868 30 100.0 37 .............................. TGCTTCGCGAAGTTTGACAGCGCGATGTTTAGATTGC 157935 30 100.0 40 .............................. ACATTGAGGATGGAGATGCAACGTTCACTGTGACAGGAGG 158005 30 96.7 38 ........T..................... TGGGACGTCGGCGGGTCCATCTCGCAGTATCCGAGCGA 158073 30 96.7 38 ........T..................... TATTCGGACAACGAACTTCCGCCGGGGCTGTTGACCGT 158141 30 96.7 39 ........T..................... ACCGCTAAGCCGCGCCCCACCATCATTAGATAGATTCGG 158210 30 96.7 36 ........T..................... CTTCCAGGGGCAGTCAGCGGGATATCAATCGCACTG 158276 30 96.7 35 ........T..................... GGTTGATCTTGGCGATGGAACGGAGAACAAGACCG 158341 30 96.7 37 ........T..................... GCGAACACCTACGACGTTGGAATCGACGAGAGTCGGG 158408 30 96.7 37 ........T..................... GCGAACACCTACGACGTTGGAATCGACGAGAGTCGGA 158475 30 96.7 36 ........T..................... GAGTCGCTATCCGTCACGTGCTTCGCTCGAGCTTTG 158541 30 93.3 36 ........T..........A.......... GCTTGTGCGATGCAGCGCATCAAAACAGCGTGACTT 158607 30 96.7 36 ........T..................... GCTTGTGCGATGCAGCGCATCAAAACAGCGTGACTT 158673 30 96.7 36 ........T..................... GCTTGTGCGATGCAGCGCATCAAAACAGCGTGACTT 158739 30 96.7 37 ........T..................... CGTCTTCGGTTCGGACTTTGTACACTCGGAAACCATG 158806 30 96.7 35 ........T..................... TTCACCCGCCACTGGATCGTCTGTGAGATGTGTAT 158871 30 96.7 35 ........T..................... CAGCGATAACCGATACCCTCGTTCTTAAACTCATA 158936 30 96.7 34 ........T..................... ATGAATAGCTCGAACATCAACGAGTTAGCCGAGG 159000 30 96.7 37 ........T..................... AAGTCCGAGAAGGCACAGAACGATGATGAACAGACTG 159067 30 96.7 37 ........T..................... GACTATCCAACTCTGGTAGACGGTTAGGTTTATTAGC 159134 30 96.7 36 ........T..................... GATCGCGACCGGAGGACCTCGTCGTCCTCGAGGTCG 159200 30 96.7 37 ........T..................... AGAGCGTTAATACTCATATCCAGCACGTTGCCCCATC 159267 30 96.7 35 ........T..................... CCGATCTCCATCGAGATATCCCGAAGGGTAACGTC 159332 30 96.7 34 ........T..................... CCGCCATCCTCTGGGTCCCAGAAGTCGCGGGCGT 159396 30 96.7 36 ........T..................... AAGTAGTCGCCGACGGAGAACACGCTAACACCCTTG 159462 30 96.7 36 ........T..................... CCTGCTCGGACGGGTCGGCCGCCGATCCGCTCCCCG 159528 30 96.7 36 ........T..................... GACACCAAGACCGTTACCTCCATTCGCTTTCGCCGT 159594 30 96.7 35 ........T..................... GACAACGGCGACGTCGTCGACGATCCGGACTCGAG 159659 30 96.7 35 ........T..................... TAATCGATCGTAGTACGCAGTGGTCCGTTGCTTGC 159724 30 96.7 34 ........T..................... CTGTCCTCGGTAGAGCCTGGTGACACCACTACTA 159788 30 96.7 37 ........T..................... GACGGCGTGAGTTCGGAAGAGGTCGAAGAGCTGTCTG 159855 30 96.7 37 ........T..................... CAAGGAGACAGCTCTCTCTCGGACAATTTCTTTGGAA 159922 30 96.7 36 ........T..................... GAACGTCGCCTGTTCATCAGGATCATAATCACCATC 159988 30 90.0 37 ........TT...................T GCAGAGGAAATCAGCCAAGATATTCGGTCTACAGTCG 160055 30 100.0 36 .............................. GATGTTGGCGACGACCAGGCGTTCCTCAACGAAGTC 160121 30 100.0 37 .............................. AGCAAACTCGAAGTCGTAACGTGCACACTTCAGGTAT 160188 30 100.0 36 .............................. CAGAACATCGCTCGCGATGTCATCGTCCAGATTCGT 160254 30 93.3 0 ........................T...A. | ========== ====== ====== ====== ============================== ======================================== ================== 69 30 98.3 36 GTTTCAGACGGACCCTTGTGGGGTCGAAGC # Left flank : TTGACCACCCGGACTTGGGAAAGAAGGTGAGCTACCAGTATCTCCTTCGTGTCGAAGCGTACAAACTGAAAAAACACCTCCTGACCGGCGAGGAGTACGTCCCGTTCCGACGGTGGTGGTGAGTGTGGTCTACATTGTTGTGGTCTACGACATGGAAGCCGACCGTACTCACAAGATGCTGAAGTTCCTCCGCAGATATCTCACACACGTGCAAAACTCCGTACTCGAAGGAGATGTGACCAAAGGCGACCTCGAAAAGATCCGATCCGGCGTCGACGAAATACTCAAACCCGGAGAATCAACTATCATCTACCACGTCTCCTCTGAAAAGATGGTCGAGAGAACCGTCTTTGGTGACGATCCTGCCGCAGACGATCAGTTCCTCTGACTGTCCTCGGTTGTTCCATCGACCCCTGGGGGTACAGAGGTTATCGCAGGTCGACGGAAACGATGAAGTGTAAACAGTCAATAGAGCTATTTACGTGGTCTAACCGGCCATG # Right flank : CGACCTGCTCGAGGAAGATGACGCGCTCGATCCGATCACTCCCAGAGTTCCCTCGCCGGATCGGACTCGTCACAAGCGCAGACAGCGATGCCCGTGAAGATGCCGTCACAAGCCTTCACGGCCGCCACCCTGACGTGGATATCGTCATCCACCATACGACCGTCCAGGGCGACGATGCGATGTTGTCGATGATGCAAGCGATCAGTGAACTCGATGATAACGCCCACATCGATGTGATCGTGCTAACCCGTGGTGGCGGATCAGAAAAGGACCTCCGCGTATTCAACGAGACGCCACTTTGTCGAGTGATTCACAACACCACAACGCCATTCGTTGTCGGTGTCGGCCACGAGAACGATCGGACACTGGCTGACGAGGTCGCAGACAAGCGCGTTATGACGCCGACACACGCAGGCGAGATCGTACCCAAAAAGGAGGATCTCGAAACCGAACTTGAGGACGTCACTGATCGATTGGACCGTGCATACGAACGAACCGTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTCGAAGC # Alternate repeat : GTTTCAGATGGACCCTTGTGGGGTCGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //