Array 1 641351-638416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLN010000001.1 Flavobacterium sp. JXAS1 L12_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 641350 36 100.0 30 .................................... ATAGTTTATAGAGGATGTTCCATTAGCATT 641284 36 100.0 30 .................................... ATTGACTTGGTCCGCCTACAGGGTCTAATA 641218 36 100.0 30 .................................... AAAAAGAAGCTAATAATTCTATTTGGAGTG 641152 36 100.0 30 .................................... TGATTGTATAAACGATGTATTAACGTTTAA 641086 36 100.0 30 .................................... GCGATTTACCGTCGCTATCTTTTCCAAACA 641020 36 100.0 29 .................................... GAAATAGCTAAAAGAATTATGCCGGACGA 640955 36 100.0 30 .................................... AGATTAAGAAGAGCGCAACAGGAAGTTGAT 640889 36 100.0 30 .................................... AGCAGCAGAATACGCGAAGATGTTTGTAGG 640823 36 100.0 30 .................................... TTTTTCCAAAGTATGAATTGTTGGAGAAGT 640757 36 100.0 30 .................................... TCTTAGAATACTAACTATTCTGTGAATAGG 640691 36 100.0 30 .................................... ACTTGGTATCATTTCCTTCAAGTGGAATTC 640625 36 100.0 30 .................................... AACAAATGAAATCATGTCAACCGACCACGG 640559 36 100.0 30 .................................... TTAGGTTTAATAAGTAATGAAGCTTTGACT 640493 36 100.0 30 .................................... TTCTTAAGTTATCACTGTAAGGTATGTTTG 640427 36 100.0 30 .................................... TGAAACTATTGAAGGTTTGAATGAATCTAA 640361 36 100.0 30 .................................... ATTAATTGAGTTCTTATAGGTTCTCTGTAA 640295 36 100.0 30 .................................... CACAGTTTTTGGGATAGTGAATCGCATATA 640229 36 100.0 29 .................................... GCAGCATACCAGTAATGCATACGTTGCAA 640164 36 100.0 30 .................................... AGTTTTGCCTGAAAACATCACAATAAATCA 640098 36 100.0 30 .................................... TGACGAACAAAAATCAAAAGAATTGCTAGG 640032 36 100.0 30 .................................... TTATACTATGAAGATACTGAAATACAAATA 639966 36 100.0 30 .................................... TTTCATTATGCTGTTTTTAAGAAGTTAAGT 639900 36 100.0 30 .................................... TATGGCAATCAAATAAGTTATTTCAGCATA 639834 36 100.0 30 .................................... AAACATTGGAACATCAAAAAGCTGCTTAGT 639768 36 100.0 29 .................................... TGAATAGAATCGTTGTCAATACTTCCTTT 639703 36 100.0 31 .................................... TAATCGTAATGCTATGGAGTCAGCAAGAATA 639636 36 100.0 30 .................................... GGTATCTTGAACGTATAACGCACCACTATT 639570 36 100.0 30 .................................... CGGACATTCTTTTCCTACTCTATTTCTATG 639504 36 100.0 30 .................................... AATATTTTGTTTCTATAATGCTCTGCTGTG 639438 36 100.0 30 .................................... TTATGTCCATAAACAGCCGAAATACTATCA 639372 36 100.0 30 .................................... TTTATTTGGGTTTGGATAGGAGGGCGGTAA 639306 36 100.0 30 .................................... TACGCTACTGGGTCGATAGCTTTGCTCATA 639240 36 100.0 30 .................................... ATTTTCGCAAGCATGGGAGGCTGATACCTA 639174 36 100.0 30 .................................... GATATAAATTTCATTGTCTTCACCCGTATA 639108 36 100.0 29 .................................... GTTATAGGAAATGAACACGAGTGTGAAAT 639043 36 100.0 30 .................................... TCTTTCTAATTCAGTTGTTAAACTTGCTAT 638977 36 100.0 30 .................................... TTTCCATTTCAGCAACCCCAGGATCTAAAT 638911 36 100.0 30 .................................... GAGGAAATGCAAGTTATCATTGACAAAGCT 638845 36 100.0 30 .................................... TATGAGAGCCGAGCAGATAATCATTGACAT 638779 36 100.0 29 .................................... CAATTGAATCAAAATATACTTTCCATTTG 638714 36 100.0 30 .................................... AGTTATTTGTTTGGTGGGCACAGCGCCTAT 638648 36 100.0 29 .................................... CTTTTTCCTGAGTCTCTTTAAGGCTTTTT 638583 36 100.0 30 .................................... TCAAAAGCCCTGATATCTAAATTATAATAT 638517 36 100.0 30 .................................... TGTTCGAATATCGTACTATAATCAATTAAT 638451 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 100.0 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GCGGATGGCAGGATTCAGTTTAGATTGCATTCAACTTCAAAACCTGATGGACAATTAGAAAAATCATCGGAAATTAATTTTGAGATTGCTAAAGAGAAGTTAAGGCTTTCAAAATCAGCATTAAATGTAATAGTTGAAGGATTCGATTTTAAAATTTCTTCAACTGGAAAAATTTCTAAAATGTAATTCTATTTTGAAAAGTTTGGCATTGATCAAGCTGATAAATATTTTAATATGTTTTATGATTGTTTTGATAGAATAGAGGGGAATCCTTTTTTATTTCCATCTGCCGACCACATCAAGAAAGGATATCGGTATTGTGTTTGTGGTGTTGATACTATTTACTATCGAATCAATGGACATAAGAGGATAGAGATTATTACCATTATTGGAAGGCAAGATTTTGATAGCAGTTCTTTGACATAAGCCATTCAATCTTAAACATCCAAACCACAACTGAAAGGTATGGCATTCGCCCAGCAGGAATGCAGTAGCTTTCA # Right flank : AGTTGGCTTGTTTCCTTCTGATATATAAGGATTTAGATGTGAATATCGTTCAGAAAAATGCCTCTTTTATGGTTTGATAACCCATAATTGCGGCATTTTTTCTATCGTACGGTTTGTAATATAAGGTTTTGGGCGTTGAAATGTTACTGATAATTATAAATACAGAAGTATTAAAATAATTCTAGTTGCGTGGGTTGAGGTGCTGATGGTAAGGCCGCTTTTCCCCAAAAATTTAAAATATGACCAAATTGTTTATCGGTTATTCGAAGTATGCTTACTTTTCCTAAAGGAGGTAGTAGTTTGTGGATTCTTTTTTCATGAACATCTGCGCTTTCACTACTTGCGCAATGTCGTACATAAACAGAATATTGCATCATAGAAAATCCATCTTTTAATAAATTGTTTCTAAATCCAGATGCATTTCGTCTATCTTTTTTTGTTTCTGTGGGGAGATCAAAAAAAACAAATAGCCACATTATTCGATATCCGTTAAGCTCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 100112-98695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLN010000004.1 Flavobacterium sp. JXAS1 L12_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 100111 36 80.6 29 ......A...A.A.CC...........C.......C TTATTTGAAATCTAAATAAGGTTTTAATC 100046 36 97.2 30 ...........................C........ TAAATTGAGTAAATCCGTTTCGATACGATT 99980 36 80.6 30 .C.A...............AG...G..C..A..... AAAACCGATTTTATGACGCATTTAAAGATG 99914 36 88.9 30 A..A.......................C.T...... TCTGTATAAAAAATGGAATTCAAGTAATGT 99848 36 97.2 29 ...........................C........ CGTGGCAGAAAATAGCGCAAACCAAAAGT 99783 36 97.2 30 ...........................C........ GAATGGTTCAGGATTATTTTTAATTCTTTA 99717 36 97.2 30 ...........................C........ TTATCACAATACACTGGGTTTGACTGTGGT 99651 36 97.2 30 ...........................C........ TTTTGCTGAGCAGGACGCTCTATTTAACCA 99585 36 100.0 29 .................................... TCACAAATGCCAACAATAACAGAGACACA 99520 36 100.0 30 .................................... ATATTTACCCGACGACCGATTAAATATTCC 99454 36 100.0 30 .................................... TTTTTTATCCTGAAGGATGCGCCAATTATT 99388 36 100.0 29 .................................... AGCACAAGGAACTGGCGTAAGCGGAGGAT 99323 36 100.0 30 .................................... CAATTCCAAGAAGAGGAGACATATTCACAC 99257 36 100.0 29 .................................... AAGAAAAGTCGAACTGCTTATGTAACTGC 99192 36 100.0 30 .................................... TGGATATTGTGAAAGCATCAGTCTACTTTT 99126 36 100.0 30 .................................... AAACAAAAGCAGTATGAGCAACGCGCAAGT 99060 36 100.0 30 .................................... TTAAACAAATCAGAACTGAGAAATGAAATC 98994 36 100.0 30 .................................... TTGTTGGTGTTCAGTAGCAGGACGTGAAAA 98928 36 100.0 30 .................................... AGGAGAGGGGATATGTTGAATCCCCTCTAT 98862 36 100.0 30 .................................... CCTGCGTAAGGCGTTACTGTTGCTTTCATA 98796 36 100.0 30 .................................... TGTGGGTCAAAAATTAAAGATTCTTTCATA 98730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 97.1 30 GTTGTAGTTTGATTAAAGATTAGAAAAAACGATATT # Left flank : GATCAAAAAGGAAATCTGAAAGAAGAGGTTGTTACTTTTTGGACTGTGGTTGAAAGAAAGAGAACAGGAGAACCGGTTTATAAAGTGCCAATAGAAGGAAAGGAAATAGTAACTGCTTTGCACATTAACGATATGTTTCTATTAGGACTAAATGAAGAGGAGATCAATTGGGAAAATCCAAATTATGAAGTTTTGAAGGAACATTTGTATAGAGTTCAAAAATTATCTTCAGGTGATTATTTTTACAGAAAACATTTGTCTTCTACCGTGACAGATGATAATTATAAGCAAATTAGGGGGTTTGGTAGCGGAAAAACGGGTTGGTTTAATTTTTCTCCGGTAAAAGTGAGAATTTCAGTTTTGGGGAAAATTCAAAAAGCAGTGAATATTTAATTTCTTGACCATGAATAGTACATTGTTGAAATAGTTATGAATCGTATTAGAACAAAAAAAGAAAAAGCCAAGCGTTTTTCTTGCACCTTTTTAGGAAGTATATTAAA # Right flank : AGTTGTTTTGCTAAGTGTTGATTTTTAGTGTTTTATCTAGTAATGTCGCTTGAGAAAATGCTTCTTTTTTGCCTTGATAAAGTAAGATTGAAGCATTTTTTAGTTTTAAAATAATTCTAATTGGGTAGGCTGTGATATTTTAGGGATTTCTGCTTTTCCCCAAAAATTCTGAATATTGCCAAATTGTTTGTCGGTTATTCGAAGCACACTTACTTTACCTAAAGGGGGTAATAACTTGTGAATTCTTTTCTCATGTACATCGGCACTTTCGCTGCTGGCACAATGACGCATATAGACAGAGTATTGCATCATCGAAAATCCATCTTTGAGCAAATTATTTCTGAATCCGGAGGCATTTCGTCTGTCTTTTTTTGTCTCGGTGGGTAAATCAAAAAAAACAAATAGCCACATTATTCGGTATCCGTTAAGCTCCATAATGCAGGATATTTAATTTTTTTTCGAGTTCCTGTAAAACACTGCTGGAGCGAACTTGCTGTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTTGATTAAAGATTAGAAAAAACGATATT # Alternate repeat : GTTGTAGTTTGATTAAAGATTAGAAAACACGATATT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAAAACGATATT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //