Array 1 9184-7471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFF010000030.1 Flavobacterium psychrophilum strain 9711 s contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 9183 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [9179] 9107 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 9031 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 8955 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 8879 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 8803 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 8727 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 8651 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 8576 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 8500 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 8424 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 8348 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 8272 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 8197 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 8121 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 8045 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 7970 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 7894 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 7819 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 7743 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 7667 46 100.0 30 .............................................. AAAAGGTTGTTGCTCATAACCTAAATGCGC 7591 46 100.0 29 .............................................. CGCATTTTTCCATTCCTTAACACCCGCAG 7516 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 98.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCFF010000098.1 Flavobacterium psychrophilum strain 9711 s contig00098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //