Array 1 1823416-1823268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083638.1 Escherichia fergusonii strain FDAARGOS_1499 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1823415 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 1823355 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 1823295 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGAGGTGGTCCAGACCTTTTTTTTGATGATGATAGTAAGTTGTTGATAATTAATGCTGCGGGAAGGTAAGGATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2556345-2555156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083638.1 Escherichia fergusonii strain FDAARGOS_1499 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2556344 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 2556283 29 100.0 32 ............................. AATCAATAAAACAATTTAGAAATATAATGGGG 2556222 29 100.0 32 ............................. GCAATGCGTCGTGCGGATTCTCACGTCATTCC 2556161 29 100.0 32 ............................. CCTGTTGAAACAGATATTCCCTACGCGCTGGT 2556100 29 100.0 32 ............................. AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT 2556039 29 100.0 32 ............................. CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC 2555978 29 100.0 32 ............................. CCTATCAGAATTGGCGGTGAACTTTTATTTGT 2555917 29 100.0 32 ............................. CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA 2555856 29 100.0 32 ............................. TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT 2555795 29 100.0 32 ............................. GTCACTTCGTTTTTATCAACGGCCAGCACGGC 2555734 29 100.0 32 ............................. CATGCATTGCTCAGCCAGTTTTATGGCAGCCC 2555673 29 100.0 33 ............................. CGGTTATCACAGAGCTGAAACAGAACTGGAAAA 2555611 29 100.0 32 ............................. GCAAACAGAACGGGCACGTAAAATGGAATGAC 2555550 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 2555489 29 100.0 32 ............................. TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC 2555428 29 100.0 32 ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 2555367 29 100.0 32 ............................. GATGGCTGTCATAAAAATTTCTCCGCTATTTG 2555306 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 2555245 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 2555184 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATATTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCATCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGTCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2572142-2571137 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083638.1 Escherichia fergusonii strain FDAARGOS_1499 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2572141 29 100.0 32 ............................. TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC 2572080 29 100.0 32 ............................. GAATAAATGATCATGACACAGCGTTGCACAAT 2572019 29 100.0 32 ............................. GTCCTACCTGTTGGCGATTTCAGCATCATCAT 2571958 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 2571897 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 2571836 29 100.0 32 ............................. CCCGCCGCACCGGATTCCTGAACTAACTTCTT 2571775 29 100.0 32 ............................. CTACAAAAAACCCATCAGGCAATTCAACGGCA 2571714 29 100.0 32 ............................. GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC 2571653 29 100.0 32 ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 2571592 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 2571531 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 2571470 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 2571409 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 2571348 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 2571287 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 2571226 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 2571165 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTATCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //