Array 1 10460-7812 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAJ01000001.1 Klebsiella pneumoniae strain JHTS010 tig00000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10459 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 10398 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 10337 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 10276 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 10214 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 10153 27 93.1 32 ........-...........-........ TACAGAACGACTGAGGCGGCGTGTATTGCATA 10094 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 10033 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 9972 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 9911 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 9850 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 9789 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 9728 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 9667 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 9606 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 9545 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 9484 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 9423 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 9362 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 9301 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 9240 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 9179 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 9118 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 9057 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 8996 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 8935 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 8874 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 8813 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 8752 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 8691 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 8630 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 8569 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 8508 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 8447 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 8386 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 8325 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 8264 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 8203 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 8142 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 8081 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 8020 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 7959 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 7898 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 7840 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 715207-712557 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAJ01000023.1 Klebsiella pneumoniae strain JHTS010 tig00010084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 715206 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 715145 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 715084 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 715023 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 714961 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 714900 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 714839 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 714778 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 714717 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 714656 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 714595 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 714534 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 714473 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 714412 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 714351 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 714290 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 714229 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 714168 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 714107 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 714046 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 713985 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 713924 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 713863 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 713802 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 713741 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 713680 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 713619 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 713558 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 713497 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 713436 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 713375 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 713314 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 713253 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 713192 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 713131 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 713070 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 713009 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 712948 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 712887 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 712826 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 712765 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 712704 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 712643 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 712585 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //