Array 1 59096-57627 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAL01000012.1 Halomonas caseinilytica strain ALO Sharm, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59095 28 100.0 32 ............................ TGGTTGCCATCAACATCCTGACGCTGGTTTAC 59035 28 100.0 32 ............................ CGGGGAACGGCAAGTTCTCCGTGGCGGACCCT 58975 28 100.0 32 ............................ ATCACCGCGCCGAGCCGCTTTCATCCGGTGCA 58915 28 100.0 32 ............................ ATGCTCATCTCACCCTTGAGCAAGGCCGTCTG 58855 28 100.0 33 ............................ ACGCGATTTGATGGACAACGCCCATAACTACGA 58794 28 100.0 32 ............................ TGGGCCAAGTTCCGCGACTTCCAGGCCCGCGT 58734 28 100.0 32 ............................ TGCATGCTCAGCATAGTGCGTCACGTCTTGAC 58674 28 100.0 32 ............................ ATCTTGGCGTTATCATCTGCCACCTCGAACAC 58614 28 100.0 32 ............................ GAATCGTCGCCTCGGCCAGCGTGGCCGCGTGA 58554 28 100.0 32 ............................ TTGAGCTCGACCACGTCCCCCATCACCAGGTC 58494 28 100.0 32 ............................ CAGGTGAGCACCCTGGGGTAGCACGTCAGTGG 58434 28 100.0 32 ............................ TTCATAGGCGAGCTCAGAAAGCGCTATAACGT 58374 28 100.0 32 ............................ TGAAAAGAAGCTGGAAGAACTTCTACAGGTGT 58314 28 100.0 32 ............................ AGCAAGGGCAGCGTCAAGGTACCCTACAACGA 58254 28 100.0 32 ............................ CTCAAGGCATGGGCACGAGGGGACGAGCACCC 58194 28 100.0 32 ............................ TCAAGGTTGTTACGGGTGGTTTCCAGGGAGTT 58134 28 100.0 32 ............................ TGGTGGTACCGCAGGTCGCAGCGGAGACGGGC 58074 28 100.0 32 ............................ AACAACAACGCCAGCGCCGCCACCACTGGTAT 58014 28 100.0 32 ............................ GCGGCGGAGATGGCGCCGTAGCTGGCCATGAG 57954 28 100.0 32 ............................ TGACGTTGTTCGCGGTGATGCGATTCCCCAAC 57894 28 100.0 32 ............................ AAGACCCGTCCGCCCTGGTCATCCCCAAAGCG 57834 28 100.0 32 ............................ CTCCTGGTTGATGGCCTCGAGGGTCTCGAGCA 57774 28 100.0 32 ............................ CTGGACGCCTGGCTGCGCGAGAGTTCGCCAAG 57714 28 100.0 32 ............................ TCCTCGGGCACGTAGGCCAGGATCTGGCGGGC 57654 28 78.6 0 ........T...........T...CTCC | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CTGTTCCCCCGGCGCTCGGTGC # Right flank : CCCCTCACTTCCTTCAACCGATCGGGGAAGTTGGTGAAGAGGCCGTCGACGCCCCAGTCGAGCAGTTGGCGCATCTGGTCTTTCTCGTTGATGGTGTAGACGTGCACCAGCAGGTCGTTGGCATGGGCCTGGTCGATGAAGTCGGCGTCGATGACCGGCTGACCGTCATAGAGGTAGTTGGGGCCGACCCCTACGGCGTAGTCGGCGATGGCCTGGAAGTCAGCGTCGGTGATGTCGGCCGGGCTGGGGGTGACGCCGGTCCATTCCTCGAGCGTCTCGCCGTCTTCGCTGGGGGAGTACCAGAGCAGCTGGATCAGCGGGATGTCGGGGTTGAGGTCGTGCACTTCCTCGAGGCTGGCCTGGCTGAAGGACTGGATGACCACCGAGCCCGAGCGCACCAGGCCTTCGGCCTCGAGCTTGCTGACCAGGGCGTCCTGCAGCTCGGGGTAGTCCGCGGGGGATTTGGTTTCGATGTAGTAGCGCACGTCCTGGCCGTAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29117-29804 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAL01000015.1 Halomonas caseinilytica strain ALO Sharm, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29117 28 100.0 32 ............................ TGGATGCGAGCGATGGCTGCCCGGTGGGCGCT 29177 28 100.0 32 ............................ AGTGCGGCTGCCGAAGATGGCGTGCCAATCCC 29237 28 100.0 32 ............................ TGCTCAGGCGGCACGAACAGCCGAGTCGTCTT 29297 28 100.0 32 ............................ ACTGCCCGTGGTCACGCTCGACGCCAGCCACA 29357 28 100.0 32 ............................ CAGCGCAATTCGCCACGACCATTTGCCATCCC 29417 28 100.0 32 ............................ GATAGGTGGATGCGATCTGCTGGCGCGTGCGG 29477 28 100.0 32 ............................ TGGGCGACCTCAGTCCGCCATAGCGCCACGTC 29537 28 100.0 32 ............................ GTGCGCCGCTGGTGCCGCGAGGGACACGTGCC 29597 28 100.0 32 ............................ TCATCGCCAAAGATACCGATACCGCCGGCAAA 29657 28 100.0 32 ............................ GGTGGCCCAATGCGGTCGATACCCCCACCAGA 29717 28 100.0 32 ............................ TGATCATCCCCGCCCTGCCTGGCTCGCACCGT 29777 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CCGCCTTGAACAGCTGATGGCGCTCCCGTGGCTGGCAGGTATGCGTGACCACGTAGAGCTGGCGGATATTGCACCGGTTCCCGCGGACGCGTGTCATCGTCGTGTGGTGCGCCGGCAGTTCAATACGGGTGGCCCAAGCCGGGTCAAGCGCTATGCGCGTCGCCACGACATCAGCGAAGAAGAGGCGCGCCAATGTATGTCGGCACCCGCTGAGCGCAAGATCTCTCTACCGTTCGTACAAGTGAATAGTCGTTCTAGTGGGCAACGGTTTGCGTTGTTCATTGAGCATGGGCAACCACAGGTGGCACCGGTGGCAGGGCGCTTCAATCATTACGGGCTGAGCCGTGAAGCGACTGTGCCCTGGTTTTGACCCTTTTTTGAGAAGCCTCTATTGAGGCCTAGTAAATCAATAAGTTAGCGCCATTTCCTGGAAAAGGGTGTGGCGCTTTCTTTGTAGGAATGCTCTTTAACAATCAGCTGGTTAGCTGTGATAAGCTCTT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCGCTGCCGCCCAGGCAGCTCAGAAACGACGCGGAGCGCCGAGTTGATGATCTCCTTGGTTCGCTGCCGCCCAGGCAGCTCAGAAATTCATAGGCGAGCTCAGAAAGCGCTATAACGTGTTCGCTGCCGCCCAGGCAGCTCAGAAAGTTGAGTCGTCGCGATGCACGGCGTTGTACTCGTTCGCTGCCGCCCAGGCAGCTCAGAAAATGACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30087-30474 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAL01000015.1 Halomonas caseinilytica strain ALO Sharm, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30087 28 100.0 32 ............................ CGACGCGGAGCGCCGAGTTGATGATCTCCTTG 30147 28 100.0 32 ............................ TTCATAGGCGAGCTCAGAAAGCGCTATAACGT 30207 28 100.0 32 ............................ GTTGAGTCGTCGCGATGCACGGCGTTGTACTC 30267 28 100.0 32 ............................ ATGACCGACAAGGCCCGCAACAAGAAGCGCCC 30327 28 100.0 32 ............................ AGTGGCCCGAAGGGTAGCCGCGATCCGCTCAA 30387 28 100.0 32 ............................ TTAGAGGTTGACAAACACCTTTAGGTGGTCAA 30447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : GACACGTGCCGTTCGCTGCCGCCCAGGCAGCTCAGAAATCATCGCCAAAGATACCGATACCGCCGGCAAAGTTCGCTGCCGCCCAGGCAGCTCAGAAAGGTGGCCCAATGCGGTCGATACCCCCACCAGAGTTCGCTGCCGCCCAGGCAGCTCAGAAATGATCATCCCCGCCCTGCCTGGCTCGCACCGTGTTCGCTGCCGCCCAGGCAGCTCAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //