Array 1 46320-47369 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJP01000004.1 Escherichia sp. E1S7 1S7_4_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46320 28 100.0 32 ............................ TGATCCTGCGCGGTGCTGATGGGCGCGTTAAT 46380 28 100.0 32 ............................ ATCATAAGCAGGTATTACGCGTATCATACAAA 46440 28 96.4 33 .............A.............. ATCTGTAATAAACGCTGCAATGGCGGTTTTACC 46501 28 100.0 32 ............................ CAGGAAGCGACGATTGAACGGATTGTCTTATT 46561 28 100.0 32 ............................ TCAACCTCTAAAGAATCCGCCACCGAGCGTTA 46621 28 100.0 32 ............................ TGATGAACATCAGGAGTGGATTGACGAGAAGT 46681 28 100.0 32 ............................ AGAGTCTGAGCATCTGCCGCTTGAGTGGCAGA 46741 28 100.0 32 ............................ TGCAAACAGCCAGGCATTCCGCGCGGATCACG 46801 28 100.0 32 ............................ TGAAGGACGTCCCCCGAGCATTTGCATAGTAC 46861 28 100.0 32 ............................ ACCGAAACACCCTGGCTTTTCTTCAATCCCAA 46921 28 100.0 32 ............................ ACGATAACAAACGTGGCATTATCTCCGGTACG 46981 28 100.0 32 ............................ TGCCCGTAACAATTCGTTAAGTCTGTGTAATT 47041 28 100.0 32 ............................ AATCTGGCCATCGAGTGCGGGCTGGCTACAGA 47101 28 100.0 32 ............................ AGAAATGGAAAAGGCCATTTCTGAAAAAATAG 47161 28 100.0 32 ............................ TCGTTCCGCCTGCTGACTGCGTTCAACAATCC 47221 28 100.0 32 ............................ TGACTTTGATATTGCCGATCTTCATGCGGTAT 47281 28 100.0 32 ............................ GGAAGAGATGGCGAAAAGTGATATTTCGGCTG 47341 28 96.4 0 ........................C... | C [47364] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGCTACGACCGGGCGATGGGCGCACGTCCGATGGCACGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTTTTAGGTAGGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCATTATGGCGTTCTCAACTCCGAACCATTAGCTGCAACACACAATAACAATTGTGATAATTGCGATAAAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTGACTCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAACGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTCGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 62170-64422 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJP01000004.1 Escherichia sp. E1S7 1S7_4_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62170 28 100.0 32 ............................ ATCCCCGGAACGGTGCGCGTGTATGAGGAAGC 62230 28 100.0 33 ............................ GCTGAACAGCAGCGCATGGCAAATCAGACCGAT 62291 28 100.0 32 ............................ TGGTCCGCAACCTGGAAGCCACTGGCAGCCCA 62351 28 100.0 33 ............................ GTTCGAATTTAAGGCATTCGCGGCGGGTATCGT 62412 28 100.0 32 ............................ GCTGGCTGTGAATTAGTCGGTGTCGTGGTATT 62472 28 100.0 32 ............................ TCAAAAAAATAAGGCGACGGCAGGAAACTATT 62532 28 100.0 32 ............................ CGTTTACGAATCTTGGCTACCGCGCGCACTAC 62592 28 100.0 32 ............................ GCACGAACTGCGCCCGGACTTGCACCCTAATC 62652 28 100.0 32 ............................ GGTGCCAGAGAACGGAATATACGGCACGTTGT 62712 28 100.0 32 ............................ ATTGCAACTAAAAAAATAGAAACCGATGAACC 62772 28 100.0 32 ............................ GCGCGGAATCTGTAGCTGTGCTGTCGTAGATT 62832 28 100.0 32 ............................ TTTTTCTGCCAATTCATCGAATGTCATAATAT 62892 28 100.0 32 ............................ TGGGCCATGAACTGGTACTGGTTGCTGTATTC 62952 28 100.0 33 ............................ CGACTTCAGGCTACGGTAAAAGACCGTGGTCAT 63013 28 100.0 32 ............................ TGAATACGCGTTCAAAATTGACTACCAGGGCT 63073 28 100.0 32 ............................ CAGCGATAAACGCTCTCTGTTGCGTCTGTCGT 63133 28 100.0 32 ............................ GGCGCACAGGGAAGCGGTAACAGCGTTCTTTG 63193 28 100.0 32 ............................ AGGCACATATGCAGCCACTCGTTATCATCCTG 63253 28 100.0 32 ............................ CGGTGCTGTGGTTGCGTGATGTTCTGGCAGAT 63313 28 100.0 32 ............................ AACGATAACGGCTGGGGAGGTAACTGATGCCG 63373 28 100.0 32 ............................ GTAGCAATAGCGCAACCACGCCTGCTGGCTAA 63433 28 100.0 32 ............................ ACTGTGTTAGCTGTTGCAGATGTATCAAATTG 63493 28 100.0 32 ............................ CTTTGGAATGAGCCGTTGAGGATGTCAGTTAG 63553 28 100.0 32 ............................ CATCAGTCCATCAATTGAAAACACGCCGTTAC 63613 28 100.0 32 ............................ ATTTCCAGTTCATAGCTGATGCCATCACCAAA 63673 28 100.0 32 ............................ TCCATACACACCAATGCCAACCTGAATAAAAC 63733 28 100.0 32 ............................ TCAGTAGTCTCGTCAGGCTCCTTCATTATGTC 63793 28 100.0 32 ............................ TATTGTATTAAATAGATCAAACATGACGTAAG 63853 28 100.0 33 ............................ GTCCTGGTTGCACATCAGGCGCACCTCGTTTGC 63914 28 100.0 33 ............................ ACATGGAAACGGCAAAACTGCCACAACTATGGA 63975 28 100.0 32 ............................ GGTAGTTCGCCGGGTCCAAACAGCGTGTTATA 64035 28 100.0 32 ............................ TCATAAATCATTAGTCGATTTCGTAGCGCGAA 64095 28 100.0 32 ............................ GCCGCAGACAAACCAGCCGCCGTCCTCAAAAT 64155 28 100.0 32 ............................ TCAGTAGTCTCGTCAGGCTCCTTCATTATGTC 64215 28 100.0 32 ............................ GAACTATATCGCTTTGACCATAAGGTTCTTTT 64275 28 100.0 32 ............................ GTGTCGCGAGCTGGTGGAGGTCAGATTACTGG 64335 28 100.0 32 ............................ TTCATGGCCAGAGCCGATAATCTTCAGACAAT 64395 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCACCCCCGCCAGTCTGTGCAACATGCGAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCTATGGAGATTATGATCGTGTGTGTTCTGATCAATTGTTTATCAAAATCTATGCAGAAAATATGAGTTTGAAGGAGTACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAAACTGTGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGATAAACGATGGGCGTTACCTGACGCGAAAATTCCTTATCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //