Array 1 550-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000010.1 Gilliamella sp. A7 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 549 28 100.0 32 ............................ ACAAAGCATTACTGTCAAGATTAAACCTAGTA 489 28 100.0 32 ............................ ACTTGATTGGTATGTGGATGGTTAGTGATACC 429 28 100.0 32 ............................ AATGCACGCGTCATTAATCAAAGATTTAATTG 369 28 100.0 32 ............................ ACTCACAATTTCAATAATTGCATTACCTTGTT 309 28 100.0 32 ............................ CACACAAAAAAAACGTAAATTAGTTAAAAAAG 249 28 100.0 32 ............................ ATGCTGGGCCGTAGGGCAATAAGTGCCCTACC 189 26 85.7 0 ....................CC-.-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AACCAGCTCGCACTAAACATAAAGGCTTATTGCTTACCAATTAGATTGGAGTACTTTATTTCGCGACACTAGAAATGTGCTGACAACTGAGAGAGATTAGCGTGGCAAACAAGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATACAGCCGATGCGTTAAGAGCGAACGATGGCGGAAGGCAGTCACGTAGTGACCACTTGCATGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGCAAACCCTCTTGACTCGGACGTAATCACCGTAGAGAAATATCCACCAAACAACAAAACGTCCGAAACTAAAAAAACAAAAAATTTGAGGAGAGGGGTTTTTTAAAGCTTAAAAATATCCTATTGCTAACCCTTTTTTTTGACTTAAAATAAAGCGATTAAAAATCAATGTGTTAAGAAGTGGTTCAAAAAAAGGGTTTTTACTGGTAAAAATAGACTTTGCCTTTTTGCCAACTACATTTATAGTATGTTGTGTTCTA # Right flank : AATTCAAATAAACAGCTTTAGTGAAGTGACCCCCAATAGTTGGACAACCAATTACTGGGGGTCTTTTTATGTCAAAATATAGTCGAGATTTAAAAATTATCATAGCTAATGAATTCTTATCAGGAGAATCATCGGAAATTCTTTCAAAAAAATATGCGATATCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7458-7071 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000019.1 Gilliamella sp. A7 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7457 28 100.0 32 ............................ TATCACAGATAGAATTGAATCATTAATACCTG 7397 28 100.0 32 ............................ TTGCCGAATATCGAGATCAACGTTTTTAGTAT 7337 28 100.0 32 ............................ GTCTTGTTCTGCCCAAGAATAAGGGAAACGAG 7277 28 100.0 32 ............................ AGCCTGCGGCAACAAAAGTATTGGGTAAATTC 7217 28 100.0 32 ............................ TCATAGCGCAACATTAATTCTGTATGTTCGTT 7157 28 100.0 32 ............................ TCAATAAATGAAATTGGTTTTTGAATTGAGGT 7097 27 92.9 0 ....................A...-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TCATTAGCTAGGGCCAATAATAAAAGTTTATTTTGATAAATCAGTTTAGTGCTTCTCATTTAGCGACATTAGCAATGTGCTGACAACAAAGTGAGATTAGCATGGCAAACACGGATGTTTGACAAGGCTGCGCTTTGTCTGAAACAAATACAGCCGGTGCGTTAACAGCGAACGATGGCGGAAGGCAGTCACCTTGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGCAAACCCTCTTTACTCGGACGTAACCTCTGTATTGAAATAGCCACCAAACAACAAAACGTCCGAAACTCACTGAATAAAAAAATTTGAGGAACGGGGTTTTTGAAGACTAAAAATATCCAATCACTAACCCTTTTTTTTGACTTAAAATAAAATCTTTAAAAATCAATATATTGATAAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TTAGCCAAAATTATAACGCCCGAAATCCATCAAACTAGAAAAGTTTAGCAAAGGAGTTTTTTAAGGTGAATAAACTTATCACATGCTATAATCATTTTCACTCATAATTAAACTCTACACCTATTATGAATAATAATTCAATTGACAACAAACTAAATGAAAAAATGGTGCTTATTTTCAAAGCACTCTCTGATCCAGTTAGAATTGAAATAATTAAATATTTAAAAAACATAAGAACGGAGGTCATTTGTGGTGAAATAGGCCAAGCGGTTGGTATCAGTAAACCTTCGGGAACTTATCATTTTAAGTTATTACAACAATCTGAATTAATTAATGTAAGAAAAAGTGCTAGAGAAAAATATATAGAACTGAATAAATCAACATTTGATAAATATGTTACAGGTTTTTTTGATAGTCTTTAAAATATTTAAATGTTGATTTAATCTTATATTTACTGCTAGAGGGTTATTAACTATTGTAATTTATTCCTTGTTGATAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3985-4252 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000027.1 Gilliamella sp. A7 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3985 28 100.0 32 ............................ GTCGGCACGTTTAATGACAACTGTTTCCCCGT 4045 28 100.0 32 ............................ AGTTAGAAGAATCCCAGAATAGTTTTTGTGCT 4105 28 100.0 32 ............................ TGTCGAGTAGTTCCGTCTATAGCTCTCTCAAA 4165 28 100.0 32 ............................ ACGTTACCTTGCATCCCGCGCAAATTTTTGGG 4225 28 78.6 0 A.............C.A....CA.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : AGCTCGCACTAAACATAAAGGTTTATTTCTTACAAATCAGTTTGGTGAGTCTTATTTAGCGACATTAGCAATGTACTGACAACTGAGAGAGATTAGCATGGCAAACAAGGATGTTTGACAAGGCTGTGTTTTGTCAGGAACAAATCACAGCGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACCTTGTGACCACTTGCGTGGTCGCCGCGAGAGTTGGTAAAGAGGGTTCGCGCCAACCCTCTTTACTCGGACGTAATCGCCGTATAAAAATAGCCATCAAACAAAAAAACGTCCGAAACTCAGCGAACCAAAAAGTTTGAGGAACGGGGTTTTTTAAAGCCATAAAATATCCCATTATTAACCCTTTTTTTCGATATAAAATAAAATATTTAAAAATCAAAGCAATATAGAATCATCAAAAAAAAGGGTTTTCAATAGTAAAAATACACTTTGCCTTTTTACCAACTACATTTATATTATATTGTATTCTA # Right flank : AATTCCGTTGAAACAGCTGTTTAAAAATGTCTAACTCATGATTTAGGCATTTGTCACTTTTTGACAGCTGCAAAATGCTGAAATCAGCATTTAAAAATTTGCAAAAAAGGGGGGGAATAACCGCAAATTTAGCGAAAAACTAAATGTTAATCCCGAAAAACAAAATTGTAACTTAAACTTGAACGCTTAAGTAGAACACTATATTATACGCGCCTTAAAATTCATCAATCAGCCTGATACCTGAAAGAGTCCCAATGTTAATTAATGCCAAAGATATTCTCGAAAAATTAAATCCACATAATAAAGTAAACTACGATTCGGTTTTGAAAGAGGTGATTGCTGGTTGGCAGTTAGCATCAGCACGACCAAAGTTACTAATTCATAGTTGCTGTGCACCATGTAGTACTTATGTACTGGAGTATTTGGCTCAGTATGCAGATATTACTATTTATTTTGCTAATTCGAATATTCATCCGCGAGTAGAATATGAATATCGTAGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2284-1957 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000032.1 Gilliamella sp. A7 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2283 28 100.0 32 ............................ TTTCAAGCCTCTCTGAAATACTAAATCTGTCC 2223 28 100.0 32 ............................ TGCCACTAGAATTGTTGATAATGAAGTTTCTA 2163 28 100.0 32 ............................ TATAATATCGATAAACCATTAACCACAATAAC 2103 28 100.0 32 ............................ TTGAGCTTCCAGTGCCGCGATTCGCTGATATG 2043 28 100.0 32 ............................ TGCCCAATTCACAACCGTTGAGAGTCGAAGTG 1983 27 89.3 0 ....................C.A.-... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ATCAGTTCGTACTAAACACAAAGGTTTATTACTTACCAATTAGATTGGAGTACTTCATTTCGCGACATTAGCAATGTGCTGACAACTGAGAGAGATTAGCATGACAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGATGCGTTAAGAGCGAACGCAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTCAAGAGGGGTCGCGCAAACCCTCTTTACTCGGACGTAATCACCGTAAAGAAATAACCACCAAACAACAAAACGTCCGAAACTAAAAAAACAAAAAATTTGAGGAGAGGGGTTTTTTAAAGCTTAAAAATATCCTATTGCTAACCCTTTTTTTTGACTTAAAATAAAGCGATTAAAAATCAATGTGTTAAGAAGTGGTTCAAAAAAAGGGTTTTTACTGGTAAAAATAGACTTTGCCTTTTTGCCAACTACATTTATAGTATGTTGTGTTCTA # Right flank : TTTACATAAACCGCCTAAATGGTGGTTTTTTTATTGCTCCTAATCTTTAAATAACATACCATTACCGAAATTTAATTACTAAGGAGATGGTATGAAAAAAATAATCTTTTTAAGTTTATTTAGCTTGGTTTTAACTGCTTGCAACACTGTGAAGTATAATTATATAGCTGAAACAAAACAAATAAGTTATCCCGATTTGAATGTTGTTACAAAAACATTTATTGGCGATGATATGGTTAGGCAGGGTACTGTTGCATCAAGGGACGTTATTTATTTCCCTCAAACTACTGTTGTTAGTAGAGGGGTAGATTATACTATTCATGCTGGGGAATATCCTAAAGTAGGTGAAGATCAAAAGTATCTGTTTTTTGGATTGAATGAGTTAAACTCTGGAGTCACAGTTGGAAAATCAACCTTTGCTGATATACCTGTAGGGATTAGAATTAATAAACAAGATAATGACCTATGTATTATTAATGTTAGCGGTGGTTCTTTATGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11837-11509 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000032.1 Gilliamella sp. A7 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11836 28 100.0 32 ............................ GTTTCAAACGAAAATAAACCACTTAATATCGG 11776 28 100.0 32 ............................ ATCTGCTGTAAACTCATTGTGTTGTTTACAGA 11716 28 100.0 32 ............................ TTTTGATATCAAATTAGCGACAGAATGGGAGG 11656 28 100.0 32 ............................ TCTCATTTTCAGGCGGAAAAGACTCATCTGTT 11596 28 100.0 32 ............................ AAGCAAAAGCTTAGCTTAGATGATGAAATGTA 11536 28 75.0 0 ...T....T..A........CCC.A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AGAGCTCCACTGTGAATGACTTTTCTTCATAGTACCTGTACTCATGAATCTATTTTCCCTAGAGTTTTGATTAAATATTTAATTTTAGTATCAGCAAAAGCCTAACTATTTTTTTATTAGATAAATAAAATGCTAAATCATGCCATGAAATAAATTTATAAACAAGAAAACATTACCATTTAAAGCTATCACAATTAATAGTTTTAACTTTTTAAAGTTTATTCAAGCCTAGTTATAAATTGCTCTAATATTAAATTCGAACTCAATAGGGATTGAAGATTTAAGAAACAAATATTGAGATAAGGTAAAAAAACAACTCATAAAAAGTTGAGAAACGACTTTTTTGGCGATTATATTTAGACTGTTGCAACCCTTTTTTTGGCTTAAAATAAAATGATTTAAAAATCAATGTTTTGAAGAATGGCGTCAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TCACATAAACCGTCCTAGTGGCGGTTTTTTATTGCTCCAAATCAATAAATAACTTAATATTTCCTAAAAATTAAGGGGATGGTATGAAAAGAATAATTTTAGCAGGCTTAATTGGGATGGTTTTAACTGGCTGTGGTGAAAAGAAAGTCACTGAGGAGATGCTTTTGGGTGATTGGGAGTGTATACAAACCGAACAAGAGGCAAAATGGAAAAATGGAATTTTTCAGGATTTTGAAGAGGTCAAAAGCGAAAAAACCTTGGTCACATACAAAAATTACGACGGGATGTTGATGAGAGGGAGTGGTGATGACATCAATAAAGGAGATTGGTACTCTGTTTCGTCAGATGTTGCTATTCAAGAAACAAAATATTTAGACATAATAGAACTTGATAAATATTATACATCTATTAAGTTTGAATATATTTCAGATAAAGAATATAGACAAACCTTATTTGTAGAAAATATTTATAATCCTCGCCCAGAGGAAGAGCAAATAAAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64214-64066 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000005.1 Gilliamella sp. A7 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64213 28 100.0 32 ............................ TAGTCAAATTTTTATTATTACAAACAGAGCTT 64153 28 100.0 32 ............................ TGTCGGTGATGACGGCGATATCACGTACGGTA 64093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCAACGCCGTATAGGTGGTTTAGAAA # Left flank : AGTACTCAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGAGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATCGGCGCAAGATTAGGTGCAAAAATGGTTATTGCCAAAGGACGAAAATTAATAAGACCAATGTTAATTACCGTTTCTACCATTATGAGTGTCAAATTAATCTATGAAAACTTCTTTTAATCATTGCTAATAAAATTTAGAACCAGTTTTAGTACAATCAATAAGCTAACAACCAAGAATACATTAGCCAATTAAAAACCCCGTTCCTCAACATTTTGAGGGACGGGGTTTTTGCATTTCCCAAAGTCTATATTTTAAATTAATAATAAACCCTTTTTTTTACATCAAAATTAATCTGATAAAAATCAGATAGTTGAAATTAACCGCAAAAAAAGGGTTTTTAATATCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : AAGGAAGTAATTAAAGATATTGACATGGAACGGTTTAACTCCGTATAGGCGGTAAAATCATTTATTAAATCTCTTAGATAATTATTTAAAAGACTCGTTTTATACATAAAACAATGTTAATTTATTGCTATCTAGAATTTGAGTTTATTTACTTATTATCATGGATTTGATTCATTCGTCTGATCTTAAAACGATTCTACATTCCAAGCGTGCTAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGTCAGCAGTCATTATATTGGAACATTCCAATAGCTAATACTAGCTGTATTTTACTTGGTACCGGCACTTCATTAACTCAAGCTGCAGTGCGTGAACTTTCCCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCAGAATTTGCCTGCCAATTTTTTTCGCCACAAAGTGAATATCGTGCAACCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 63523-63250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000006.1 Gilliamella sp. A7 NODE_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63522 29 100.0 32 ............................. AGCAAAAAAGGAAAAATCGGGAATGGCTCAAA 63461 29 100.0 32 ............................. CTAAATTTATTGAAATTTTAGACGGTGATATT 63400 29 100.0 32 ............................. GTTGGGCTTCTTTTGTCGCTGATAATTTACCA 63339 29 100.0 32 ............................. CAAATACCAACCTCAATTATACCCCCTCGTCA 63278 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AAGCTCACAAGCTAAAAGTATCACATTAAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCTACCCGTTTATCAAAGGATAATGTTGATCTTTATTTAGCATATCAACATGAAGATAAAATTCTGCCTTACTCAAGTAGTAGTGAGTATGCTTGGGAACAAAGTCATCTTACAATTAGTGCATCTAAATGGGCTAGGGTTAAAAATGACATTCCACAACTTGATCAACAACATCTAGAAAAATTAAGACAACAAATACATAGATCTAATGCAATAATTGTTTTAATTAAGTTAGAAAAAGAATCTTCCTTTTATACTAAAGAATTAGGTTTTTATCTTAATTAATTTAATCCACATTTAAAAAGTAATAATTCTATCTTCTAATAAATTGATTAAAATTTAAACCAATAAAATTGGTGAAAAATGACGACTGTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : AGGTTTTAATTTAGTAAATGGTAAGGCAGTTAGTAGATAGGCTACACTAATTCGTACAACTTTTTAAAGGATAAGATAAACTACCCTAAAAAAAGAAAATACGATGAAAATAAAACGACGAGGGAGACCAACCTATACTGATGATTTTAAACAGCAGATGGTAACGCTTTATCAACTTGGTAAAACACGCAGTAAATTAGTTTTACAGTATCAGTTAATGCTATCAGCATTAGATAGAGGGATAACAAAATACTCCACAACAGATTCATTCAAGTTAAAGATAATCGAAGCATTGAAGATAATGAGTTACTAGCCCTACACAAAGAGAATAAACGGTTATTGATGGTAAACGATATCCTAAAGCAAACTAAACTAATTTAGCATAATAGGGATTACTCAATGTTGCATTGGGTAATGACTTTGGTAGAACTTCTATTTTTGCCTACAAAAACAACCTGTAAGGAAAGTAGCCAGAAAAAGTCCAATGATTGACATTAAGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81532-82536 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000006.1 Gilliamella sp. A7 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81532 29 100.0 32 ............................. AAAATTTAGGCTATTTAAAATTGCCATTAGAC 81593 29 100.0 32 ............................. AGCTAACAGTAATTGAACGTCCGCTGTGGGAA 81654 29 100.0 32 ............................. GTAACGAAATTCTTATTATTCCTTTGGGCGCC 81715 29 100.0 32 ............................. TCGGCGTTGACAAATCGTCAATTGTTCGTTTA 81776 29 100.0 32 ............................. CAATAGACATAATAAAAGTAGCGATGGAAATA 81837 29 100.0 32 ............................. TTGGCAAATTAAAAATATAATTGAAATAAAAA 81898 29 100.0 32 ............................. GGTTAACTGATTTTACTAAAAGAGGAATGAAA 81959 29 96.6 32 ................T............ TAGGTATTTAGGTGCATCAATATCAAATTTAA 82020 29 100.0 32 ............................. CCAATCACTCGAAATGTTGCCGATAAATTTAT 82081 29 100.0 32 ............................. TTATTAATAACTAATTTATAATTTATATGATA 82142 29 96.6 32 ............................T AGGCAGCTATTGCCGCCATCCGTCGAAACATG 82203 29 100.0 32 ............................. TATTTACTGAAGTTTATTTACAATTAGATGAT 82264 29 100.0 32 ............................. CACGCTATCTTATATTGACACTCTATCGAATT 82325 29 100.0 32 ............................. CCCTAATTCAACCCGAACCTTAGCTATATATT 82386 29 100.0 32 ............................. CGTTCCAGTCCCGCCAGTATATTGTTGATTTT 82447 29 100.0 32 ............................. TATTTACTGAAGTTTATTTACAATTAGATGAT 82508 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATTGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCTCCAGCTCCAGACGATGCCCAACCTCCCGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATTACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTCCAAACTTATGGCGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTAGTATCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TGTACTAGTTAAAAATTACATCCATATGGTTTTGAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAATTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCATAAATTTATTATCAATCATTTGGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCCGGCAAAACAACAGCCGTCAATACAGTTGCACGTATTTTAAAACAACATCATATTGCTGATTTAAAATTTACTCGCGAACCTGGAGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTTGGTAATGAGCCGCTAACCGATAAAGCGGAATTGTTAATGCTATATGCTGCTCGTATTCAATTGGTTGATAATGTAATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7619-7041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASN01000064.1 Gilliamella sp. A7 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7618 29 100.0 32 ............................. GCACATTGTCAGAATGTGGCGGATTAGCGTAT 7557 29 100.0 32 ............................. TGATTGTTATGTCATCCCGGTTGATCGATTAG 7496 29 100.0 32 ............................. TATATCTTTCATCAATTATATCCCATACACCA 7435 29 100.0 32 ............................. CGCGTGTTGTTGAAGAGATTAAATTTGAAGGA 7374 29 100.0 32 ............................. GGCCAGATCCGCATGAGGACTATATTTGAACA 7313 29 100.0 32 ............................. GTAAGGGAAATGCGCAATCATTAAATTCTTGT 7252 29 100.0 32 ............................. AAAAACTAACTGGTGTTAGTTTATTGTGGGAT 7191 29 100.0 32 ............................. TTTAGAATCAAATAAGAATCATAAAATTTATT 7130 29 100.0 32 ............................. GGTTTGCTGAATGTTTTCGGTGATTGCTAGAC 7069 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACTAGTACCGCAGGCCGCCCTATTTTATCTGCCATCGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTAGTTACCCGTTATTTTGGTGGTATCAAATTAGGTACAGGTGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCATTGTTTACAACAAGCAGAATTAATTGAACTTATCGCTAGAATTTCTTTGCAATTTCACTGCTATTACAATGAATGGCCAATTATCGAAAACCGTTTAAAAGAACTGGATGCGCTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCAGTATTGCTATCACACTAGATAATCTAGCTATACTCAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAATACCTGTATAAACACACAGTCAAATATAACAAAAAAATTGGTAGAAATCGTAAACTGAGTATTTTAATTATAAAACAAATGGTTATAATTAGA # Right flank : ATTGCATTAGCTTAGAAAAAAATTAATGTTCCCCGTGGGTACAAGGGCAGACCGTACAATCGGTTTTTAAACAAAGTTTATTGTGTATAATATTCTACTTTACTACCGCAGAGGTAGTTATTAAATTCAGACAAACCGCCTTCTGGCGGTTTTTTATTGCTCCGAATTCCTAAATAACCTACTATTGCCTAAAAAAGGAGATGGTATGAAAAAGATTGTGTTGTTAGGGTTAGCCTGCTTTGCGTTGTGTGGTTGTGGTGATGATAAAGTGACAAAAGGGTATCTTGTTGGTAAATGGGACTGCACTAATAAAAAATATGAGAGTGAATTTGATTTTAAATTTGAAAAATACAGTGATTATTCTGAAGCAAGTAGCAAACAAGTAATTCGCTCATATAAAGTTGTTAATGGAGTTTTATTAAAGAAAACTGCGGATAACGAAGCTGAAGAGGTTGATTTGGATGAAATTTATAATAATCAAATAATAAAAGGTAATAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //