Array 1 1659072-1658003 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670847.1 Halomonas subglaciescola strain ACAM 12 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1659071 29 100.0 32 ............................. AACTCCACCGTGCCCGACGGCGCCACCGCTGA 1659010 29 100.0 32 ............................. AACACCAGGAGAGCCGCAACCACCCCGCCGCG 1658949 29 100.0 32 ............................. ATTAAGGCAAGGATAGAAACGATCCGTGAAGC 1658888 29 100.0 32 ............................. CTTATAAAGCTCCTCAATATCCACTTGAACCA 1658827 29 100.0 32 ............................. ACCATGTTGCGGACGTGCGCAATGAGGCTCGC 1658766 29 100.0 32 ............................. ATGCTCAGGCGGGTTCAGCGGGATCACGGCCA 1658705 29 100.0 32 ............................. CCCGCGAGTTCTCGAAAAAGCGCATTGACCGC 1658644 29 100.0 32 ............................. CGCGTCTTCCTGCAGCTCGCAGGCGCGCACGT 1658583 29 100.0 32 ............................. GCGGCCTACCATACGGCCAGACCCCGGCTGAA 1658522 29 100.0 32 ............................. TTGGAAGACCGTTTGTGCTAACTGATGACAGC 1658461 29 100.0 32 ............................. GTATCAAGGTGCTGTATGGCCCATCGGTATCG 1658400 29 100.0 32 ............................. GATTTGTCTATCCCGGCCGAGGGCCGCGAGCC 1658339 29 100.0 32 ............................. AAATGCGAGGGGATGACGTTCGAGCGTTCATT 1658278 29 100.0 33 ............................. CCCTGGCTCCAGGCGTTGCTGGCGTCGATCTCC 1658216 29 100.0 32 ............................. AGCGCCTAGAGCTAACCGAAACCCAGTGCGAC 1658155 29 100.0 32 ............................. ACCGGGTAGCGGCATAAAATCGCCCGGCTCTC 1658094 29 100.0 32 ............................. TCGCCCATCAGTAGGCGCGGCGTATCCGGGTA 1658033 29 82.8 0 ....G........T....T........AT | C,A [1658005,1658008] ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 CCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CTCCATTTCTTCAATAGCTACATTGTCCTTCTTATGCTCATGTACTGATAAACCTAGTGGTAAAACTCTTCTGAAAGCCACCCTTTCACAAATCTTAGAAGTCAGTAGGGGTAATTCCCGCTTCTCAAGCCAATCTAACATCTCGCCAGTGTCCTTAGTCCTTGCGTCTATACGTGCCAGGAGAACCCTTATTGAAAGGTTTGGGTTGAAGTCTTTAGCCAGTTCCACGACTTCTAGAAACCCCGACACAGCGGCAGAATCAAAATTTGAAGCCCCAACAGGTATTATTGCAGCGTCTGCGAGGGAGAGTGCTGCACGTAAATCAGCAGAATCGCGTCCACCGGCATCCACCACTGTATCATCGACTCCTTTAGAGAGGCCCCTCCCTTCATCTAGTAAAGCCCTGCCAAGCAGTCTTGTAGTGACTGGACTAGGCTGCTCTGCATTACACTCCCGACGCCAGTAAGCCCATGTAGCAGCGCTCGCTTGAGGATCACCGC # Right flank : GGACATGGGCCAGTACGGCGAGGATATGAGAATTAACGCGCCGAACGAAAAGGGCCGCTTGCCCACCTTCAGTTGCCACTTCTTGGTGCATGTGGGCGCGTGCGTGCATTTTTCTGGGGCAGCTGAAACAATAGCGGTGTTTCGGTGCTACGTTGCGGCAGGGTGGTAAACGAGCTGTTATTAACTTTTTATGAAAAATAAATTATTTTAAATCAAATATTTAAGGTGGTTATTCAGCTGTATTCGCCGAGTTGGCACGCTGCCTGCATTGTTGATAGGCAACGGCGGATGCCCCGTAGGCAGCATTACCACGACGTGCTACAACACTAGCCATGATTTTTGCCAGTGCCGGCTAACGCCCACGGGCACCCTTGACGATAAGCCACGCTTACCCCGGAGGACAGAATGTCAGCCAAGACGCTTGCCCTGATTGAAGAGCATGATGTGAAATGGATCGACCTGCGCTTTACCGACACGATCGGCAAGGAGCAGCACGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1665221-1661713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670847.1 Halomonas subglaciescola strain ACAM 12 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1665220 29 100.0 32 ............................. GCCGAAGCCGACAGCCGCATGGTTGATTTGGA 1665159 29 100.0 32 ............................. TTGTTATTGGACAAAAACCGGCTGGTGTCCTT 1665098 29 100.0 32 ............................. AGCCGTTTCGAAGCCCTATCCAGCTAACAGGA 1665037 29 100.0 32 ............................. TTTTTTCAGAGGGAGAGACTTGTCAATTACTG 1664976 29 100.0 32 ............................. GCACAACCGCAAGATGATTAACGCGGATGTTG 1664915 29 100.0 33 ............................. CGACTCACGGTAACGGCTGATTGTATCGAAGGC 1664853 29 100.0 32 ............................. CGCACATCAAATATGGCGCGTGGTTCGTATTG 1664792 29 100.0 32 ............................. TGCTTTCAGCGGCGCTCGGATTACGTCATACG 1664731 29 100.0 32 ............................. CAAGCCGCCTGACCCTACCCTCTAACGTTAAT 1664670 29 100.0 32 ............................. CAGAATGACCACCTGATGGACGCCACCCGCTA 1664609 29 100.0 32 ............................. AAAGGGGAGTTGGGAGGCATCAGAGCCATGAG 1664548 29 100.0 32 ............................. ACATTGATGATAATGGTGCCCACCGCAACGCC 1664487 29 100.0 32 ............................. CCTTTAGCCCACAATGCATAGCCATCTCTCCG 1664426 29 100.0 32 ............................. GGCATCCGTCTTTCCGGGGTGTGTTCGCATAG 1664365 29 100.0 32 ............................. GCAATCTGGGCACACCCTTGCCGACGCCGCCA 1664304 29 100.0 32 ............................. GTTTGGTGCTCAACAAGCAGGTCGTACAGGTC 1664243 29 100.0 32 ............................. GGTTCGTCTTGGCCCTCGGTCAGGTTCTGGTA 1664182 29 100.0 32 ............................. GCGGTACCAGGCGACGCCGGCGGCGTGGCCCA 1664121 29 100.0 32 ............................. GAGTGGCAGTCATGCCCACGAACCGGCAAGCA 1664060 29 100.0 32 ............................. CGGGTACCGCGCTATTAGCCGGTGGCGAAAGC 1663999 29 100.0 32 ............................. CATTTACAGGAGGAGGAGGCTACAATGACAGA 1663938 29 100.0 32 ............................. CCAAACGCCTGGATGGTAGCTGGCAACTCACC 1663877 29 100.0 32 ............................. CGCGAGTGGCACCAGACGCGCCCACGTAATGA 1663816 29 100.0 32 ............................. GTGTTCGTGGCCAATGAGCTCGAGCCGCTGCA 1663755 29 100.0 32 ............................. TGTACCAATAGGCTGGCAAAGCCCGTGGTTCA 1663694 29 100.0 33 ............................. TGGCCGCTAAGAACCAGATTGAAACCCGCTGGC 1663632 29 100.0 32 ............................. ATTATGAACCCTGCTTGCCGGTTCGTGGGCAT 1663571 29 100.0 32 ............................. AAGACATTATCTGTGATCCGTTTCAAATCCCT 1663510 29 100.0 32 ............................. CCAATGCTGTAGGGTGGAAAAAACTTTCAGGC 1663449 29 100.0 32 ............................. ACGGTTCCAGCATTTTTGGCTTTGGCGTGCCG 1663388 29 100.0 32 ............................. GCCGATTCGTTAAATACGACACCGGCAGCATC 1663327 29 100.0 32 ............................. CATGGCCTGCGTGGCGCTTGGTGTTAGAACAG 1663266 29 100.0 32 ............................. GTATTCAGCTAATGTCGCGCTAATCGGCGCGA 1663205 29 100.0 32 ............................. ATCAAGGAGAACGTTATGACATTTTTTGATGC 1663144 29 100.0 32 ............................. AAATCGCCGATCAGGCTCTGCGCATGCTTGAT 1663083 29 100.0 33 ............................. CGTATGGCACCGGCGTCACTTTTGGCGAAGAGC 1663021 29 100.0 32 ............................. GCGACAGCCTGCTCGAGTGGGCGATTGAGCAG 1662960 29 100.0 32 ............................. CAGCGTTAGGTTTCCGTCGGCATCAAAGCCTA 1662899 29 100.0 32 ............................. CGTAGTTTGTCCAGCGTAGTGATTAGCTTACC 1662838 29 100.0 32 ............................. AACACGTTGGTGCCTGCACGAATCGCGCCCCA 1662777 29 100.0 32 ............................. ATCGCAGCACAGCTTGTGCGCCAGATGGTGGC 1662716 29 100.0 32 ............................. GCTATCGCTTGGATGGAGTATTTCGCGCATTT 1662655 29 100.0 32 ............................. CAGAGTCGGCAGGCTACTGGACTGAACGCCTC 1662594 29 100.0 32 ............................. AAGGCAAAGAGAACCTGTTCGAGCCTGACGAA 1662533 29 100.0 32 ............................. TTGAAACTGAAGTCTCGTCGCACCTTCCCTTT 1662472 29 100.0 32 ............................. TAATTCGATCATTTCCTGTAAAGTCCTCTAAA 1662411 29 100.0 32 ............................. GCTACTTCCAGCCGCTTCGCAACGGGTACAGC 1662350 29 100.0 32 ............................. GACGCCGCCGTGGCCGGCTTTTACGGCCGCAT 1662289 29 100.0 31 ............................. ACCACGGCGCCTATGTATTCGGTGATCTGGC 1662229 29 100.0 32 ............................. CTGGGAGAGAAAAGACGTCCTAGACGCAGCCG 1662168 29 100.0 32 ............................. TAATGTCTCCTTCGGGTGATATATCTGGGCCA 1662107 29 100.0 32 ............................. GTAATCCGTAACTGCCTGTCAACGCCCTCAAA 1662046 29 100.0 32 ............................. GCGGGTGTGACATGGAGTATTCAAGACAGGCA 1661985 29 100.0 32 ............................. AGATTGAGACCTTTTTGTAACCCCTGCGAGTG 1661924 29 100.0 32 ............................. TCGACATCGCCACCGTTCAGCACCAAGAAAAG 1661863 29 100.0 32 ............................. ATCAGCGCTGGACGCCGGTCGCGGACGCAGCA 1661802 29 100.0 32 ............................. AATCAACTGTTCACCGGGGCGAATTTTAGGAT 1661741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 58 29 100.0 32 CCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GCGATATTGATCCGCCACTGCCAGCACCCGAGGCGGTTCCACCGGCTATTCCCGAACCGCCTTCGATAGGCGATGCCGGCCACAGGAGTTAACGATATGGCAATGCTGGTGGTGGTAACCGAGGCGGTTCCTCCGCGTATGCGCGGCCGATTGGCGATATGGCTACTTGAAGTGCGCGCTGGGGTTTATGTGGGAGACGTCACTAAACGAATTCGGGAAATGATCTGGGAGCAAGTACAGGCGCTTGCTGAAGGCGGCAACGTCGTAATGGCTTGGGCCAGCTCCCACGAATCCGGCTTTGAATTTCAGACTTACGGTGATAACCGTCGACAACCCATTGATTATGATGGACTAAGGTTGGTGCGGTTTTTGCCTGAAAAAACTAACTAGCTGTTTTAAAAGGATCTTTAATAATTCGGCTTAACTGAAAAACAAGCAAAATAGTCGGTGGAAAAGATGCCGCCTATTTTCTTGTTGTAAAACAATTGGCTACAATTAGT # Right flank : CTCTTAGCTGCTGCGGGAACTCGCTCAAAGGCGTTGATTGAGGCTTATAAGAACGTCTTAAACGCTGAACAGAAGCGGCTAGATTGGGTGCTTGCTGATAAACCGATTCGTCAATACGGTAAACGTGGGCAGTACGGGACTGATGTCGCTCTAGGTGAGTCTAAGAAGTACGTAGAAAGTGACTTCTTTAAGGAGTCTAAGCCTGAGAAAGCAGCCTTCAAGACTGAATCTCAAACTCAGGTAGACGATGAAGACGAGGCCTCAAAGGCTCCTGGTAAGCTGACTGACTTTTTAACAACTGAACAGAAGCTTCGTATCCGCCAGTTCTACAAAATCCGCAAGGATCACGTTAGTGGAAAGGGTTTCTTTCTTGTCAAATTCAATTCAGAAGGTGTCTATGATTCTGGCCATGGCCCTTACCCTACTGCCGGAGAAGCTTACGAGATGATTCTTGAGCTAGAAGGCGTTGAGATTCCCGAGCAGAGTTGAGGTGATGTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //