Array 1 130-491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPP010000008.1 Jiella sp. CQZ9-1 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 130 32 100.0 34 ................................ TTTTGTGCCTGCGATTGTGTTATCAAAGCTTTTT 196 32 100.0 34 ................................ TCAAGAAAGAAGGGTCTCGCACTATCGCAAATGC 262 32 100.0 33 ................................ CTCGCAAGCTGGATCGCGTAAAAATCAGGAGGC 327 32 100.0 35 ................................ AATCGATCCTTGATTTGCACATCCGCGCGCTGAAC 394 32 100.0 34 ................................ AGCCTAACCGTTTCCAAGCTTTCTCCCGTCCTTC 460 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCCTCCCATGCGGAGGCGTGGATCGAAAC # Left flank : GCCCCGATCCTTCACCAGCCTCACTGTCTCAAGCTTGAACTCGCGGCTGAACTTCCTTCTCTGCATTCCAACTCTCCAGTTCCGTTAAACACCTTATCTCGGTGTCCACGAAACCGGCAGCAGGCCAGTG # Right flank : CAGGCCCGAAAATGTCTGGGTCTTCGTGGGGCCGAGGACCGAACAACCCAATCCTCCGCGATGACGACGACAGCGTTGCTCACGGCTGCGAAGCCAGATCAAGGGTGTCAGTCAGACTTTGAAAATCGGGTCCATCGGCACAAGGGGGGCAGATCGATTCGGATCGATGCCCGATAATCTCCATCTTCATCAAAATTGCCTTTTACGCCACGAAGGTTGTCACGCCTTGCGCTCCCCGCCTTCGCATTTCGTCCTGAACGCCAAAGCGCGTGCAGCCATACGAGCCATGGCGCAAAATGGTAAACTCTTGCTAAGACGGCGACATGACCAAGCCCTTGCCCATCGCCATCGGCCACAGCGCCTGTCCCCACGACTGCCCGTCGACCTGCGCGCTCGACGTGGAGCTGCTGGACGGAGGGCGGGTCGGTCGCCTGCGCGGGGCCGCCGGCAACGACTATACGGCCGGGGTGATCTGCGCCAAGGTCGCCCGTTATGCCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCATGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 48479-49628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPP010000021.1 Jiella sp. CQZ9-1 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 48479 32 100.0 36 ................................ CTCGCTGGCGCCATGATCGGCGCATCCTCGGCCCGT 48547 32 100.0 35 ................................ TTCTTTCGCGGCGATCTCTGCCGCCGTCACCTGCC 48614 32 100.0 33 ................................ GAAAACGTCATCCACTGCCACGCATTGCCGATG 48679 32 100.0 33 ................................ GGGCAGCGCTGCAAATCTAGAGCGGAATGCGAT 48744 32 100.0 33 ................................ CAGATGGCACGCCGCGCCTGAGTCTGCTCGGGC 48809 32 100.0 33 ................................ GCTAACAATCCGTGCTCGACGATGCGGGAATGC 48874 32 100.0 34 ................................ GTATAGGTGAGCAGCTCGCCGTCCAGGTGCGGCG 48940 32 100.0 34 ................................ TGCTAAGGTGAGGACGAAGAACGGATGGAGGACG 49006 32 100.0 33 ................................ TCTGATTTTACGGGCAATGCGGCGCCGGATATC 49071 32 100.0 33 ................................ ACACGGCCATCTTCGGCCTCCGCGAACCTGTAT 49136 32 100.0 34 ................................ AAGCAACATCTTACAATAGATCCCCACGCCCTCG 49202 32 100.0 35 ................................ CGCACCATGTTGGCGCAAAGCCGACCGGACCTGAC 49269 32 100.0 33 ................................ CATCCAGGACGACGAAAACTCGCTTTCGTCTTC 49334 32 100.0 34 ................................ CAAGACGATCGGGCGATGTCGAGGTAGATGCAGA 49400 32 100.0 33 ................................ TTGCCGCCATCGACCGATAACGGTGGTGCAGGA 49465 32 100.0 34 ................................ TCGGACAACCAGGCGATCACGACGACGGCTGTCT 49531 32 96.9 34 .........G...................... CATTATGCGGCTGCGTCGACCTATCGGACCACCG 49597 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.8 34 GTCGCTCCCTTCGCGGGAGCGTGGATCGAAAC # Left flank : GCCTTGACAACTACCCGCCGGCCCGCGCCATTTCCGATTACGTCGTGACGATCGACCGCGAGGAATGGCCGGAGGGCGTTGAGATCATCGAGGCGGTCTGATCACGCGATGGCCGACGAGGCGGGGCGGCGAGGGCGCCGCTTCTGCGCGAGGGCAGGACGGTTTGCTGATCGCCGCCATCGCATGCACATGATGTCGGCGCCGGCGGACCGGCTGGCGCCGTTCGCGGCTGCAATGCCAGTGGCGGCAGTGCCCGAGCTGTGGCACAAGACGACGCATCGCACCGTTGCCGTGCCGGGGCGCTCCTCAGCGCCCGCACCGGCGGGCGAACCCCAAGCGTGCCGCAAAATCCCGGCCGGTTCGCGCTCAGCGCAAATCCTTGATCGCACTCCAACTTTCAAAAGTCCTTCCTGCCGATGGCAGCCGTGCCGTTGAAATCCCAGCCGGTTCGCGCAATCGGCGGCATTTCGTTCGTCCCGACAATAGGTTACACAGAGGCA # Right flank : CTGCACGGATTGGCCTGCTGCCGGTTTTTCGGACACGCAGTTAAGCTAACATAGCTTTCTCCTCGAACTCGACGGGGCTCATATAGCCCAATGTCGAGTGCCGTCGCTGGGGATTGTAGAAGCGCTCGATGTAATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //