Array 1 3182159-3181462 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK036965.1 Klebsiella pneumoniae MGH 35 adjbD-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3182158 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 3182097 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 3182036 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 3181975 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 3181914 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 3181853 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 3181792 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 3181731 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3181670 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3181609 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3181548 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 3181490 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTATTTGAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCACAGTCAAACGCTCCAGACACCAACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAACACCACCAGTAACAGCTACTGTAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACCCTGTTGATTTTGTTCCAGGTAATACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACCTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTGCGAATTTGTTGGTCGATTTCGATCT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3183623-3182434 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK036965.1 Klebsiella pneumoniae MGH 35 adjbD-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3183622 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 3183561 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 3183500 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 3183439 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 3183377 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 3183316 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 3183255 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 3183194 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 3183133 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 3183072 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 3183011 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 3182950 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 3182889 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 3182828 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 3182767 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 3182706 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 3182645 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 3182584 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 3182523 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 3182462 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : TTAACCTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTGCGAATTTGTTGGTCGATTTCGATCTGTGTTCCCCGCGCAAGCGGGGATAAACCGTGGGTAGAGGTTAACTGGTTATTGGTCATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTTGTCAATATCTCCCGGCGTCCGCGCCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGTCCGGAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //