Array 1 4-580 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHH01000033.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain DSM 17626 G531DRAFT_scaffold00031.31_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 ............................G ACCTCGACGCCGCTCACGACGGCGCGGACGGT 65 29 96.6 32 ............................G TAGGCGCTCGACCCCTCCGGTAGGGCGTCTGC 126 29 100.0 32 ............................. ATCAAGAGGCGGCTGCGGCTGATCTCGTCCTG 187 29 100.0 32 ............................. CTCAGCCCCGACCTCGGCGATGAGTGCCCGCA 248 29 100.0 32 ............................. GAAGGTCCTCACACGTCCACCTCGATTGTCAG 309 29 96.6 32 ............................T CCTCCACCAACTCCCTTGCCGTCTTCGCCGTC 370 29 100.0 32 ............................. ATCCCCCACAGGCCCGAAAAAACCGCTCCGGC 431 28 93.1 32 ....................-.......G GACTCCAGACCCGCATGCCCGCCCGGGAACGC 491 29 100.0 32 ............................. CCCGCGCGTGTACCCGGACGGATTGCCCGAGC 552 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : CTTG # Right flank : TCGACGGCACTCCAAAATGAGGCCATAGCGGCAGTCGAAAACGAGGCCACCCAGACAGATTGGTTGGGTGATCTCTGTGGAGGATTGGGCTCTGATCAGGCGGCTGGTTGCCGATGGTGTGCCGCAGCGTCAGGTCGCTCGGGACCTGGGTATCGGGCGGTCAACGGTAGCGCGGGCGGTCGCGTCGGATCGTCCGCCGAAGTACGAGCGGCCGGCGGTGCCGACATCGTTCACGTCGTTCGAACCGGCGGTGCGGCAGTTGCTGACCGACACTCCGAGCATGCCGGCCACAGTGCTCGCCGAACGGGTCGGCTGGGAGGGGTCGATCACCTGGTTCCGCGCGCATGTGCGACGGCTGCGGCCCGAACACAGGCCGATCGATCCCTCGGATCGGTTGACGTGGTTGCCCGGGGACGCTGCGCAGTGCGATCTGTGGTTCCCGCCGAAAAAGATCCCCTTGGAGGACGGCACCACGAGCCTGTTACCGGTCATGGTGATCA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2853-5962 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHH01000033.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain DSM 17626 G531DRAFT_scaffold00031.31_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 2853 29 100.0 32 ............................. CCTACGCCCGACCCGGACGTGTAGATCGTCCG 2914 29 96.6 32 ............................G TTCGCGGGCACCTTCCGGTCCGAGCCGACCGA 2975 29 96.6 32 ............................T TGCTGGGGTAACCGGTGTTCGACACGATCGCA 3036 29 96.6 32 ............................T TCGGTGGCCGGTCAGACTGCGCTCAAACAGGT 3097 29 100.0 32 ............................. TCTGCCCGGCCGCTGGTGGACGCACTTTCTCA 3158 29 100.0 32 ............................. CACTCGGCGGCCTGCCGTCGCACGTCACAGGC 3219 29 100.0 32 ............................. TCTGCCCGGCCGCTGGTGGACGCACTTTCTCA 3280 29 100.0 32 ............................. CACTCGGCGGCCTGCCGTCGCACGTCACAGGC 3341 29 100.0 32 ............................. TCCCACCCCGCCGGATACGCGGTCGGGGACCA 3402 29 100.0 32 ............................. ACCAAGGAGATCAGCATGGCAACCACTGACGA 3463 29 100.0 32 ............................. TGATGCATGGTCGGACTGCCCCAGCCTGCCGG 3524 29 100.0 32 ............................. CCGTCAAAGTAGGCGTCCGGGTAGCCGGTGCC 3585 29 96.6 32 ............................G CAGTCACGATCACCCGGACCAGGAGCGCGGCC 3646 29 96.6 33 ............................T CTCTCCGCCCAGCTCATTCGCGCGGTCACGCAA 3708 29 96.6 32 ............................T CTGCGGGAGGCGTTGTCGCCCGCGGAGTTCAT 3769 29 96.6 32 ............................T CCCCTCCGCCTGAAACTCAACCTCAACCATCG 3830 29 96.6 32 ............................G AGGTAGAGGTCCCCGAGCATCTGGCGGGCTAC 3891 29 96.6 32 ............................G AGAAGCGCGTCACGGACGCGTCACGCCGTGAC 3952 29 100.0 32 ............................. ACCGGATGGACCATCCTCCACGGCGACACCGG 4013 29 96.6 32 ............................G CGATCCGGATCTCTTCGGTGCTCTCGGCCAGC 4074 29 96.6 32 ............................G ATCCCGGGCGAGGGCATGTTCAAGGATGTGGC 4135 29 100.0 33 ............................. TGACCCCGCAGATCACCGGACAGGCGGTGGTCC 4197 29 96.6 32 ............................T CGACCTGAATCCAGCGGCCACCCTCGGGGTAG 4258 29 96.6 32 ............................G CCGGAGCATATGGAGGTCGTGACCCTCCGGGA 4319 29 96.6 33 ............................G GAGCGAGCATGGGTGCATCCGGCCAGTGGGGCG 4381 29 100.0 32 ............................. AGGACATCGGCGAGCGGTCGGGGGGCGGTGAT 4442 29 96.6 32 ............................T GGTGGGACCAGGGAGACTACCCGTTCCCGGTA 4503 29 96.6 32 ............................G AAGTCGATGCACTGCTTGATGAGTCCCCGGTT 4564 29 100.0 32 ............................. GTGATCTGATGCACCGCCCCGGCTTGGGTGCG 4625 29 96.6 33 ............................G CACTTGCCTACAAATCCCTGTCCGATCTGGTCG 4687 29 96.6 32 ............................T ATAGACGGCCGGGCGGGTGGTCACAGGCTGCT 4748 29 96.6 32 ............................T TGATCAGCAGGTTGATGATGCCGCTGCCGAGG 4809 29 100.0 32 ............................. GCGTGATACCCCGTCTGCGAGTCGTACGCGGA 4870 29 96.6 34 ............................G GACAGGGCCGCAGTAGGCACCTGTCCGGCCGTGC 4933 29 96.6 32 ............................G CTCGATGCAGCCGGACTACACGACCGACGAGA 4994 29 96.6 29 ............................A CCTAAAGCGGTTGACATAGCAACCGAAGC 5052 29 100.0 32 ............................. ACCCCCAGCGAACAGAGGAGAATCTCATGACC 5113 29 96.6 32 ............................G GTCGGCGGGGCAGTAGAGCTGGAGCAGATCAA 5174 29 96.6 32 ............................T CTTGGAAACTACATAGCGTTAAATGGGCGGCA 5235 29 96.6 33 ............................T CACGATTCCGCTCATTGAGCGGGACCTGATCGA 5297 29 100.0 32 ............................. GCAAAAGAGGCCCCCGACCCACCCCGTGAGGG 5358 29 100.0 32 ............................. ATCTCCCAAGCCGCCGTGATCATCGGCGTGCA 5419 29 96.6 32 ............................G GCATCAAGCAGGGCAACCTGATCACCATCCGC 5480 29 100.0 31 ............................. CCAAAGCGTACGCGCTCGGGCAACTGTCGGC 5540 29 100.0 32 ............................. TGGAAGCTCCGGACCCTCAAGGATTCCACCGG 5601 29 96.6 32 ............................G CAGACCACTTCGGTGGACTGGTCCGGTATCAC 5662 29 93.1 32 ...................T..C...... GCATACACCGAGGTGCCCATGTTCCGGGGGAA 5723 29 93.1 32 C.......T.................... CGTTCGTGCATGTCGCCGCTCAGTTTGCCTGA 5784 28 96.6 122 .................-........... CGGGCCGGCTTGGTTGTCGACGGCGGTTGAAGAGTAGACAGTAACGCCGCCGAAACTGACCAGTTTTCAAGCGCCGTCGACAATGATCCCACGCAGAACTGCCTGCCGACCGTGATCGCGAT 5934 29 89.7 0 .....G.....A................A | ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 50 29 97.6 34 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : CACCGGATCCTGTTCGCTACCGCGACCGAGTGGGTCACCCGGCTCACCGACGCCCACCGCGCCGGCCGACTCCCGCTCGAGCTGACCCGGCTACGACGCTACGGACTGATCATCGTCGACGAGGTCGGCTACCTGCCCTTCGACCAAGACGCTGCGAACCTCTTCTTCCAGCTGGTCAGCAGCCGTTACGAGCACGCTTCGCTGATCCTTACCTCCAACCTGCCCTTCAGCGGCTGGGGTGGTGTCTTCGGTGACCAGGCCGTCGCTGCCGCGATGATCGACCGCGTCGTCCACCACGCCGACGTCCTCACCCTCAAAGGCGCCAGTTACCGACTACGCAACCGCGGAATCGAAACCCTGCCCAGCATCAAGACGCAAGACACGGCAGACTAGGAACAACACGAACCGGTGGCCTCGTTTTCAACCGTCGGTTCGGCCTCAGTTTCAAGCGCCGTCGACAATGATCCGGTCGCGGGAGAGGTCCGGCGCAGCTCCGGGCA # Right flank : AGAAGTGGAGAAGAGCCACACACCTCCGCCCACGTACCGCCCGGCCGGGAGACACCTCCGCTCGGACGAAGAATAGACCACTTGACAAGGCATTTACCTCGGGGTCGAGCGAGTCTTCTGGGCTGCGCATGACGTCCCGCATCCAGTGCCCCGAACCATCCGCAGGGACTGTCTGTCTCTCCGTTACGCAAACAACTCCCGTCAGAGTCGCCGCAACCGATCCCGTCAGCCCTGCAGAAATGCCAGCACCGCAGTCACCCGGCGATGCACCTCCTGGTCGCCGCGCAGGCCGAGCTTGGCGAAGATCCGCTGGGTGTGCTTCTCCACCGCCCCCTCGGTGACCACCATGGCCCGGGCGATCCCGGCGTTGGTGTGCCCCTGGGCCATCAACTCCATCACCTCCCGCTCCCGCGCGGTGAGCTGTCCCAACGGATCCTGGACCCGGCGCCTGCCCATCCACTGGGCCACCACCTCGGGGTCGAGCACCATCCCACCGACGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1209-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHH01000041.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain DSM 17626 G531DRAFT_scaffold00039.39_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1208 29 96.6 32 ............................C CATGATCGTCGCCTCACGCAGCGACCGGACCC 1147 29 96.6 32 ............................C GATCTCCGACGATTCGGTCACGTCCCCGAAGG 1086 29 100.0 32 ............................. CTCCCACGACACCCGGCAGTACCGGACGTCAA 1025 29 96.6 32 ............................C GGTGCCCTGGACAGCTATAGCCCTCACGATTT 964 29 96.6 32 ............................C GATGGGCCCCAGGGTCAGGGGGATGTCGTCGA 903 29 100.0 32 ............................. TATTGAGGGCGGACGGGTCCCTTCGCTATGCG 842 29 100.0 32 ............................. CGTTCCGCCGGCGCCGAACCCGCGCCACCGAG 781 29 96.6 44 ............................C TTGAGGTTGAGCTGCATGCCGGGCTTCCACCCGAACGGGCCGAA 708 29 100.0 32 ............................. AACGACGTCATTCGGATCCCGATGACCCTCGA 647 29 100.0 32 ............................. ACGTTCACCCAGGCCGAGGTTGACCGCATCAT 586 29 100.0 32 ............................. GACGGCGCGGGGGCCGCGATTGACACCTCCGG 525 29 100.0 34 ............................. GCCATCCTTGATCTCGAACAGCTGGTCGACCAGT 462 29 100.0 32 ............................. ACGAACGTCACGAACCTGATCGACACCACGCG 401 29 96.6 32 ............................A GGGGCGGCGTCACTGCGGGAGCACATCTCCCA 340 29 100.0 32 ............................. TTCACGTTCACCCCGGAGATCACCCCGGGCGC 279 29 96.6 32 ............................C ACGTGCCGCAAGTGCTCGCGCCACGAAAAACG 218 29 96.6 32 ............................T CGACCTGAATCCAGCGGCCACCCTCCGGGTAG 157 29 96.6 33 ............................T GTGAGTGAGCCGCTCCTGATCGCGATCATCTCC 95 29 96.6 32 ............................T GCCCCGGTGACCCCGGGGAGCCGGTTCCCTGC 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 20 29 98.3 33 GTGCTCCCCGCGCGAGCGGGGATGATCCG # Left flank : GGCAGCAGCCGAAACAGAACCCGACTGGGACTTCGTTCAACTCTGGGACGAACAACTCGGCGAAGTCCAGGGCGGCGTGTCCTACGGAGAGGACCCACCCTTTTGACCGTCATCATCCTGACCGCCGTCCCCTCCGGCCTCCGCGGCCACCTGACCAGATGGCTCATGGAAGTCGCACCCGGCGTATACGTCGGCCGCATCTCCGCCCGAGTCCGAGACGCACTCTGGGACATCATCCTCGAGATGGTCCGCGACGGGCGAGCCCTGATGGTCTTCAGCGCCCGCAACGAGCAAGGCCTCGAAATCCGCAACCACGGCCACTCCTGGGAACCCGTCGACATCGAAGGCATCACCCTCATGCGCCGCCCCGGCCCCCAACAAGTAGTCACGGAAGGACCCAAAGTAGGAATCAGCAAAGCCGAGCGATACCGACGCATCCGAACCCGCCGCAAGTGATGCTGAACTAGGTGAACCCGCGGTATCCTCCCTTGTCAGCAAGT # Right flank : GCGCTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //