Array 1 416-27 **** Predicted by CRISPRDetect 2.4 ***
>NZ_AMHF01000025.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_26, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= =============================== ==================
415 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT
355 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA
295 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA
235 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT
175 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA
115 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT
55 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= =============================== ==================
7 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT
# Left flank : GAGATATTGGCGTGACTGG
# Right flank : TGTTTCAAAAGCTACACCATCAAAACC
# Questionable array : NO Score: 6.16
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT]
# Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.68,4.87 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 260-50 **** Predicted by CRISPRDetect 2.4 ***
>NZ_AMHF01000033.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_34, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================== ============================== ==================
259 30 96.7 30 ............................G. CCAAAACACGAAACGTTTGCCATTAATGGC
199 30 93.3 30 ............................TA CAGCAATAACGACCAAACCGATATAGGTAA
139 30 100.0 30 .............................. ACGAACATCATTTACTTGCTGAAGTTGCTT
79 30 100.0 0 .............................. |
========== ====== ====== ====== ============================== ============================== ==================
4 30 97.5 30 GTTCATGGCGGCATACGCCATTTAGAAAAT
# Left flank : CTGCTGCTGAGGTCATTCAAT
# Right flank : TGCTCTCAATAATTCGCAAGTAAAAGTGGATGTTCATGGCGGCATACGCC
# Questionable array : NO Score: 5.74
# Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT]
# Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.27,4.87 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 19074-14720 **** Predicted by CRISPRDetect 2.4 ***
>NZ_AMHF01000078.1 Acinetobacter baumannii AB_1649-8 AB_1649_8_79, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================== =============================== ==================
19073 30 96.7 30 .............................A TAAACCATTTGACGTTGACCAATCGCAAAT
19013 30 96.7 30 .............................C AGATGAAACGTATGCTTTGCCTTCAGCTTT
18953 30 93.3 30 ............................TG GATCTGGTCGGCGAACACTATCATTTACAC
18893 30 96.7 30 ............................T. CCAAAATGGTCCTTTTTACCCCTTCATCAA
18833 30 96.7 30 ............................G. TGAGTATGTCATTGGCCACAACGTTGAATA
18773 30 93.3 30 ............................CA GAACAATAGGAAGCCTGATGTGCCATCCCG
18713 30 96.7 30 .............................C GCTGCGGGATTTGTTGAAGTGTTTTCAAAT
18653 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT
18593 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT
18533 30 96.7 30 .............................G CCACGTCAACAGCAGCATTGGCATTAGTAA
18473 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA
18413 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA
18353 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT
18293 30 100.0 30 .............................. CTTGAGTTCAAATAAACGGACAAATGGGAT
18233 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG
18173 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG
18113 30 93.3 30 ............................TA ACTTAGACTGAATATCTGATGCTAAAGATT
18053 30 96.7 30 .............................G CCGGTGTTGATCTGATATGCGTTAGCCATT
17993 30 100.0 30 .............................. ACGCGCCAAACATGAATGGGTTTAAAACGT
17933 30 96.7 30 ............................T. TGTGCCTCAATATGATTTCAAATATGGTTT
17873 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG
17813 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG
17753 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC
17693 30 96.7 30 ............................T. GTTTCAGTTGCATAGTCAAACGATGAGAAC
17633 30 100.0 30 .............................. TAGCAGGTGATTACGCAGTCTTATCTAATG
17573 30 100.0 30 .............................. TAAGCAAGGGCTGACCCCGACCGCCGAGCA
17513 30 100.0 31 .............................. TGACTTACAGCGTTATGAGAGATCCCTAGTT
17452 30 93.3 30 ............................TG ATGATTGGATAGAGATTCATGCGTTAGATT
17392 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG
17332 30 96.7 30 ............................T. TGGCAACCAGTCGCCCTATGCGACCTGATA
17272 30 93.3 30 ............................TG TAAAAAAGTTTAATAATTTTTTCAGTGAAT
17212 30 96.7 30 .............................G TTGCGATTCTTATTATGCGTGAAGTTACTA
17152 30 100.0 30 .............................. TCACGGGTAAAAGCTGTTTGACAGCTAAAT
17092 30 100.0 30 .............................. TGGGGGTACTGCTGCTGAGGTCATTCAATA
17032 30 96.7 30 ............................T. GTAACAACTTTAATGGAGAAGCCTTAATCT
16972 30 100.0 30 .............................. AACGAGAAGCGTTGCGTAGACTTACAACTC
16912 30 93.3 30 ............................TC TTGTTATTTCTGGTAATAAATATCAGAACA
16852 30 93.3 30 ............................TC AAATCTAAGCCATGCTCATTAGGCATAGGT
16792 30 100.0 30 .............................. CCTGTCTCTTGGTCAATCTTGGCACGTAGG
16732 30 100.0 30 .............................. TACCGACTGATTGTTGAGTGGCAATGTTAA
16672 30 96.7 30 ............................T. ACACATGAAGTCAGCAAATGCCACCATGTT
16612 30 96.7 30 ............................T. GAATCGGCCGCTTTGCGTATAAACACCACC
16552 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA
16492 30 93.3 30 ............................TG GAAGTCATGAATGTAGGTGTTGAGGATGGC
16432 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT
16372 30 93.3 30 ............................TG ATGCGGGTTGTCCACCAGTTATGACTACTT
16312 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG
16252 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA
16192 30 96.7 30 .............................G TGAATGGGATTTATTCGCAAGGTGATATTA
16132 30 96.7 31 .............................A AAAGTTTTTTTGACAATCAAGCCGGCAAGTT
16071 30 93.3 31 ............................TG CATCGAAGTCATAGAACGCTTTGAGTTTCCA
16010 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT
15950 30 93.3 30 ............................TC CATTCTCGCTAAGTGGCATCACACGCGATG
15890 30 96.7 30 ............................T. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA
15830 30 93.3 30 ............................CA ATGGATTTAAAGATTTCAACCGCTTGGGAG
15770 30 96.7 30 .............................G TTGATATGATTATTAATATTAAAGTTGTTT
15710 30 93.3 30 ............................TG TGCCCATTCCCGCAAACACGGCGCAACGCT
15650 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG
15590 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT
15530 30 96.7 30 .............................G TAGTTGCACCAGACTCCGCACAATCTAAAA
15470 30 96.7 30 .............................G CAAATAGATCAACTGGTGCGCCCTATGAAT
15410 30 100.0 30 .............................. CATCGAAATTTAGTTCTAATTCTTTAATTT
15350 30 96.7 30 .............................G TCTTTAATGTCGGCAACATGCTGTGCAAAA
15290 30 96.7 30 ............................G. AAATATGCTGCTTTAACCCGCCAAACGAAT
15230 30 96.7 30 .............................C CAGAAAAGCAGAGTAAAGCTTCACAGCCAT
15170 30 96.7 31 ............................G. AAAAAAGAACATTTCCAGCAAAAATTGACGA
15109 30 96.7 30 ............................T. GCTGCCTGCAAACTTGTTTGGGGCTTTATG
15049 30 96.7 30 .............................C TGGAATTCAGCAGTAAATAAGGGGTTAAGA
14989 30 96.7 30 ............................T. TAAAGCTAAATGAGGGTTAAACCTAAGAAA
14929 30 93.3 30 .......T.....................A CGTGAACAATTGTTTTAGCTTTGAACATTA
14869 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT
14809 30 90.0 30 A......A.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA
14749 30 70.0 0 .......A...T.....T..C...AGCGT. |
========== ====== ====== ====== ============================== =============================== ==================
73 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAT
# Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA
# Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC
# Questionable array : NO Score: 5.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT]
# Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.28 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//