Array 1 7005-8234 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000026.1 Fervidicola ferrireducens strain Y170 AN618_contig000026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 7005 29 100.0 37 ............................. CCCGGAAAGCTACGCGATAAAAGACACAATCTATGTC 7071 29 100.0 35 ............................. GCCTACATCGCTGTCAGCGTCCTTGGTGGCGATGC 7135 29 100.0 36 ............................. TGCCGTCGCTCTTGCCTTCATCCTTGCCGCTGTGCC 7200 29 100.0 36 ............................. GTGTATCAGCAATATTCTCCGGGCCAACAAATAGAG 7265 29 100.0 36 ............................. TTGTGGGTACGCTAGGTTGAAGATGTAAACTTTGTA 7330 29 100.0 42 ............................. ACGCCAGGAGTGTCTCTTTGCCACTCGACATTGTCGTATTCG 7401 29 100.0 36 ............................. CGGGATAGACCAGAGGAAACAGACCGGCGGCAGTAA 7466 29 96.6 37 ..........T.................. TTTGCCGGAGGGCGGGGTTGGATTCGATGGCGTCGGT 7532 29 100.0 41 ............................. TCCTTTTGTCGGACTTGAATTGAGGGCCGTATAAGGTTTTC 7602 29 100.0 37 ............................. AGCACCCGGTCGAACCAGCGGAGGACTTCAGGCTTGC 7668 29 100.0 35 ............................. TGAGGATAGGGACGGTTTATATCAATAACGCCATA 7732 29 100.0 36 ............................. AAGAGAGGCGGGAGCACCTATATCAACTCTGATTAT 7797 29 100.0 38 ............................. GTGGATGACACGCGAGGAGTTCCTACACGCAACCCGAA 7864 29 100.0 35 ............................. TACTCTTTTTGTAAATCGAAGAATTCTCTCTTTAA 7928 29 100.0 50 ............................. TGTGGGATGTAAATCTCTGGAGAACGCTTCGCTCTTTTCTCCCCCCACCG 8007 29 93.1 36 A...........................G CAAGATTTTGAAGTTTTGAGGTTGAAACTTTGCCAA 8072 29 79.3 36 A....A..........AC...G......G GAAGATAAGGGGTCTCGAATTTATAGCTATTCTCAA 8137 29 86.2 40 .....A......T.......A.......G GGATGCGACCACTTCGTGATTGACAACACTTGCTTTGTCA 8206 29 82.8 0 .....A..........A.A....A....G | ========== ====== ====== ====== ============================= ================================================== ================== 19 29 96.7 38 GTTTTGTCTTAACTATGTGGGATGTAAAT # Left flank : CTCATAGCTCAGCAGGGTGAATACAATCCTGCCTTGATGGTGGGCGAAAGCGACTACTATTCCGTGGTAGTCAAAAATGCTGGAGATGTCCCGGTGACGACGGACCTGGTTTGGCGGCAAAACGGCAAGCAGATAAGGGAAATATCCATCACAATACCTGCGAAGGGTTACAAAGAAGACAGGATAAAGTTTACCATGCCACACATCAAAGAAGGAAGTACGGTAAAACTTGAAGCTGAAGTCAATCCCTACAGGAACAAACCACCGAAGGAGAAAACCTTTGCCAATAATAAGGCCACATTCCCGGTGGAATGCCTTGGCGTGGACCAGAGACCGCAAACGGGCGGAGGCAATCCGTACCTGAGTAAATAGATAAGAAGCGAGGCTTTTAAAATCATTATCACAAGAACTGCCGTCGACCTCCAGGGATTTTACGACTACCGGAGGTCGACGGCAGACTGGATGACAGAAATGGCTTTACATCAAGGTTTTCCCTTTTG # Right flank : GGACCTGGTGAGGGACTTAATGTGATTTAAGAATGTGATTTGATAAGCGGTAGGTAAAAAGTCAACTACCCCCGCTTGTAGAAGCGGGGGCTTGTCGGCAGGAGTGAACTGCTGACAGGTCTGCCACCGGCAGGTAGTTGGACGCGGGTGTGTGGCAGCGGGACATGACGCTCCGGGACGACACTCCCAGTCCCGGGAGACAGCGGTGAAATCCCGTAGCCTTACACGGGGTGCTGCCGTACGCCTCAGGAAGCCCCACCACCTTTCAAAAAAGGTGCCCGGATCACAGGGCTCCTGCAAGAGGAGGAGAAAAGATGGTATTGTTCACCGCTGACAAATACGGCAGGCCAGGCCATCCGACGAAAAGGTTCGACATGATAAGGAAACTGAAAAAGCGGGGTGGGGTAAAGATTATTGGTGGAGGAGCTTCCGGCAAGCCACCGGTAGTGGTGTTCCTGGACAGGGAGTTCGATTACTCCAAAACAGTACCAAGGAAATTC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTTAACTATGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10774-11136 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000044.1 Fervidicola ferrireducens strain Y170 AN618_contig000044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10774 30 100.0 36 .............................. AGTTCAACATCATGGCCGTGCCTGGTATTTCTACTA 10840 30 100.0 36 .............................. TATACAACGGTTTTTTCCCTTTGTCAAGTCGTCATA 10906 30 100.0 35 .............................. TTTCTTCGCCCCAGATAGCCTGGTCGACTAGAAGC 10971 30 100.0 37 .............................. TTGGCTGCGAGTTCGCCGGGATAGCTCTGCCATCCCG 11038 30 100.0 39 .............................. ATTTTCCCGTCAGGTGGGCAACCTTGCTGGAGGTATATG 11107 30 96.7 0 ...........................G.. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 99.5 37 GTTTCAAAGCCAGATAGCTAGGATGGGAAG # Left flank : CAGGTGATCCCCATGAGGTGGCGGATTTACTGGAAGATTTAAAGCACACAGGTTTGGGAATAAGGACGACGGTTGGCTACGGACAGGTGGGTGACATTGTGATTAGTAGAGCGCCTGCCGACTACACACTGATAGGGCCGGACGGATACCCGAGCAGGGTGATACCGGCCAAAGAAGTGGAAAAGCCTGACCCGAAATGGATGAAGGCGGTGCGGGCATATCGGCCGCCATACTGGTGGGGCGAAGAGGTACTGTGTTATTTGCCGCCGAGGCATCAGTACTTGCCGGTCCTGAGCCCGGCGGAACTGATAGCGAAGCTGAACAATGCGTGAAAAAAAACTGCCGTCAGCCCTCCCGGGGTTGCAAGAATCGGAGGGTGACGGCAGTGTAAGTCACCGGGTGTCGTCGACCCTCAGGGGTTTCTGCGCTATCAAAGGTCGACGACAGAAATGGATGGAGGAAGGAGGCGAAGGCTGTATATAGCGCAGATTTTGAGACGG # Right flank : GAGGGTAAACACCTCGGCGGGCCCCTCGGCCTTCAAAGGATCGATATAGATAAAAATGGTGCAGTACTTAGAATCAACGTAGGTGAAAGAAAGTATGCATATGCAGGGATACAAGCAGGATGGGAAAAGGGAAGAAGCCGGGAGGAATTACTACAAGCAATCAGCACTGGTGAAGAACCATGTTCTGTCGAGTTAAAACTCAGAAACGGGAAGGTATATGCTTACTTTACAATTGAAGAAAACTCTCCGGAAGTTGTGGTAACAAAGGAAAATGGAATTGTAGGGATAGACATCAACGCGTACCCGAACCACATAGCGTGGTCGGGAACAGACGAGAATGGTAATCTTGTAAGTTATGGCAGAGTACCGATGCCTGAACTTACAAGCGGCAATTCAAATAAGAGGGAATATTACAGATGGCAGTCTGCCCACGAAGTAGTAAGGCTAGCAGAAGAAAAGGAAAAAGCGATAGCAATCGAGAAATTGGACATAAGAGGCAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAAGCCAGATAGCTAGGATGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 13160-13528 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000044.1 Fervidicola ferrireducens strain Y170 AN618_contig000044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13160 30 100.0 39 .............................. GTTTATAACGCCCTGACCAGAGTGCGTATACACGGCCTT 13229 30 100.0 39 .............................. ATTGCCTGGGCGAACTCTTTTGAGAGGCGGACGACAAGG 13298 30 96.7 36 ........A..................... GTTCTTATGCGCGCAGTTTTCTCAATCCCCGAAGTG 13364 30 96.7 37 ........A..................... GGGATTTGTGCCAGTTTTGTATCGCGCGCTGTGTTTC 13431 30 100.0 38 .............................. GAAATTATCGCCTCCGAAGTAATCCAGAAAATTCTTGA 13499 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.4 38 GTTTTAAGGCCAGATAGCTAGGATGGGAAG # Left flank : TCTGATGTTAAAGGGTTTGAAATAAGGTTTACATCACCGACATCCTTCTACTACAATGGGATAGATGTACCGTATTTCGACCCGTATATATTCTGGCAAGGGGCCCTCTGCACATATAAGAAACTGAAGGAAAGGGAACCGCTTTTAAACGCAAAGGCTATTATGCAGATAGCCCGGCTAGAACAGTGCGAGTGCAAAACGGAGAAATTAATGCTGGACGATAACATACCTTTCTCCGGGTTTACAGGGGCGGCAAAGTTCAATTTTACCAAATTCACGCCTTGTGAAGCAAAAATTTTTATGTACTGCCTGCTTGAGATGCTGGAATACATGGGGGCAGGGAGGAAAACGGGATGGGGGATGGGCAACGTGGAATTTAACCTGCTCTAACTCTGTTATAAACGTCGTCGTTCTCCCGGAAATTTTGCATTATTGGGGTCGACGACAGAAATGGACTATCGAAGGGAATGAAACCGCATAAAATCTGAGATATGGGACGG # Right flank : ACGCACCCCAAAGGAGAAGAGGTGAGGTGGGTAGATTGTTAGGATGGAAAGTTACACATCGCCAGCCCTCTAGCCCGAGGCTTAGTTTTTCGTGATGCTGTTTGCGCTTTCCAATGTGGATACGAATAAATTCAACCTGGTTATGAGTTCGGTGCAAGGATCGCTAGGGGTGTTGCCGGGCGGAAGATCGCTGATAGAAGGAGAGTTCGTGGAAGAAGGCCTTGTAGGAGAAAATTTGTACCTTGGAGAGCAGGAGCAACAGGAATTAAGAGAGATAGGTCAACTACCACCCGCCTGTAGAGGCGGTGGCTTGCAAAAGCCATAGTTGACCAGCCTAAGGAACTGACTCGAAGGACAAGGGGATGATGTTCCTACGTTATCCCTGTCAGGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAGGCCAGATAGCTAGGATGGGAAG # Alternate repeat : GTTTTAAGACCAGATAGCTAGGATGGGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 15279-14241 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000007.1 Fervidicola ferrireducens strain Y170 AN618_contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 15278 30 100.0 36 .............................. CGCAACATTCGCTCATTAAAATCATCTTTAGCTTCA 15212 30 100.0 37 .............................. TATAGCTCGCACAACTTTTCCGCACCCGGTTTTAGTA 15145 30 100.0 37 .............................. TGCGAAGGATAAGTGCTTCTTCATTCATGCTGTCACA 15078 30 100.0 36 .............................. TGATATTCCTTCATGGGAATGGGAGCCGGAATATGA 15012 30 100.0 35 .............................. GCGTAACCTGCATTCCGTCAAACTGGCCACTCTGA 14947 30 100.0 38 .............................. GTGGATGAGTGGACAACGTACTTACTGCGGTTTGACGG 14879 30 100.0 36 .............................. CAGAATCTAACGGCTACGGCAATAAACTACAATAGT 14813 30 100.0 36 .............................. AATTTTGAAGAACTTAATGACTTTGAACAAGAGATT 14747 30 100.0 40 .............................. GCATATCCGGGCCCGCAAAATTTGAGGGCAGAAGTATTAA 14677 30 100.0 36 .............................. TCAAGCATCTTAACCATGTTGTTGTAAGTTACGAGC 14611 30 100.0 36 .............................. GAGAACAGGGCATGATTTAGTTTTGTGTTGGTAATC 14545 30 100.0 39 .............................. GGGCGTTAATCAAAACAACTTATTCCAAAATCTCCAGAA 14476 30 100.0 38 .............................. CCGACTGCTATAACGGATTGAAAAATCGTTTTCTCGTT 14408 30 100.0 39 .............................. TGCTTCTGATATGTCCTGCTTAAGCTGGCCTACGATTTC 14339 30 100.0 39 .............................. GATTCAATTCAAAACAAAAAAAATTTACCTCCTAAATAA 14270 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 100.0 37 GTTTTAATCGAACCATAGTGGGATTGAAAC # Left flank : ATACACTCTATGAACAAGTCTTTTCTTCAGATGATTGGAAAAAAGAATTTTTAGAAGGGCGAAATACCCTTGATGAGGTTCAACGAATTTTGGGATGTTACACAATAAATCTGTCAGATGAAGAAATGCGGGAACGTTTTACTGCGCGGAGGGGCCATTTGTCGGTAGATGTGATTCCTTCGGGCTATGTGCAGGAGGCTTATGAGCTAAAGCAAAAAGAGGAATTCTGGAGATTACCGGAGCTGCTGGTCCCCGTGCCGATATATTGGTTACGACAGAGCGAATACTTTACATTTATAGAAGACCTTAATTGCATTCAAACTACATTGGAATATAGTTCTGAATTCGGATTAATGCCACCAAGCCAAGAAAAAAGTAATAGCTTTGTTTTTATTGACTAATACAAAAACTGCCGTCGACCCCCTGGGGTTTTTCAAGTACCGGAGGTCGACGGCATATCCAAGGCTGCAAAGCCTTATAAAGTCTAGTTTTTTTGCTTG # Right flank : TGATGCCTCCGGCCACGATTTTTTCATTAATTGCTGGCCCCTCAAGAGAATTGGACTAAAACGCACAACATGCTAAAATTTCTCTTGGGGGAGTCAAACTCAATGGCAGCACGTAAAAACTTTACCCTCGAAGAAAAACTTGCTGTCCTTGCCGAGGATGAAAGCTCTTCTACTACCAAAATTGCTGTATGTAGGAAGTATGGCATATCAAAGAGCACCTTAGATTACTGGAAAAAACATCTCCTGAACACTGAAAATTATCCCGAAGATGAACTTAAAACTCAGAAAAGAAAACGTTATGCTATGCTCAATAATTGTTGATAAAGACTTGGAAATCGCTTATTTAAAGGAATTATTAAAAAAACGAGCCGGAGTTAAATGAAAAAAGATGCTTTATTCCTGGCTTTTCAAGGACCAAAAATGGCGAAATTGTAACTGGCGAAGCAATAAAGACGCTACTTTTAAATCCAAGGAATTTCAAGAGTAATGAAAAGGCCCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCATAGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 20596-12041 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000016.1 Fervidicola ferrireducens strain Y170 AN618_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================== ================== 20595 30 100.0 40 .............................. AGGAGATCTTTCATGGCTAGCCTGCGTAGTTTGCCACGTA 20525 30 100.0 37 .............................. TCGCATTCATGAAGGGCGTGCCCGCTGCCGACATGAA 20458 30 100.0 35 .............................. TCTACGATTCTCAGATTAAAAGCTACGCCCAGGCA 20393 30 100.0 36 .............................. TCTCCTTGGCCCGCATGATGGCCAGCATACTCATGG 20327 30 100.0 37 .............................. ATGTCCTCTATGCTACCTTCGCCTTCCTGGATAAGCG 20260 30 100.0 36 .............................. AAGCAACGAATGCGCAACGAATGCATTCGTTACGCA 20194 30 100.0 38 .............................. CGATGAATTCGTGAAGCTCCACCCCAAGAACTTCCCCC 20126 30 100.0 36 .............................. TCAGGATGTATGCTTCTGGCCTCATGGGCGGAGCTG 20060 30 100.0 39 .............................. CCTTGTTGTCGGGAATCATCTTCTTGACAGTCTTAACAA 19991 30 100.0 37 .............................. AGCAACCGCTGGCCTGATGTGGTCCTCATCTATCGGA 19924 30 100.0 39 .............................. CTATCTTTAGTGTTGCGGATGCTGCGTCCACAGACCTGG 19855 30 100.0 36 .............................. AAGCCATTGAAGCGGAAATCGAAGAAACGGAAAACC 19789 30 100.0 37 .............................. TGTCACCATTGAGGAAGACCACCACTACCTCGTCTCC 19722 30 100.0 37 .............................. GAAAACGACCATTCCCAAGGGGCACAAGCAGGAATCT 19655 30 100.0 39 .............................. ATCTTCAGCATCGCTCATCACCCTCTTACGCCGTGGTCA 19586 30 100.0 40 .............................. CTCCTCCCCAATTAGCATTATACAACAAACCCTAGCCTTC 19516 30 100.0 38 .............................. ATAAATTTTCATCTGCCCGCTTGACCCGGACGGAGTCG 19448 30 100.0 41 .............................. TCCCCCCGCTATCGTCTTTCTGATTATGATTATACACATGT 19377 30 100.0 38 .............................. CGTGCAACCAGTGGCAGGGATTGCACCATGAGGCTAGC 19309 30 100.0 37 .............................. TCTCGTAGTCGGCAGGATAACGATCTATAACGTACTC 19242 30 100.0 38 .............................. GAAACCAAAGAGGGACGATTATATATCGTTGAATCTTG 19174 30 100.0 37 .............................. TTCACCGCTGCGGTTTTGTACATCTTTTTGCAGACGA 19107 30 100.0 37 .............................. TCATACAGCGGGAAGGAGGGAAAGTGAATGCAGGTCC 19040 30 100.0 38 .............................. CCTATCTAATCCTTCCTGAGTGGCGGATAAAAAGCATA 18972 30 100.0 38 .............................. ACTGGCTGATATATGCCGTTGCCATAATATCCTCCTTT 18904 30 100.0 36 .............................. TGACTTCCCACAGGTGCCGTTTATCTCCTCCAATAA 18838 30 100.0 38 .............................. GCTAACTTTATCAACGGCAATCCATTCATGCCAGTGAG 18770 30 100.0 38 .............................. TTGCTTCCATTGCGGCGGATATGGCAGCCAGCTTCATT 18702 30 100.0 35 .............................. GCTCATAGTCTCCTTTGACCGCCTCGCCGGTTAAA 18637 30 100.0 38 .............................. ATCCTCTTGATCTTCCGGATGTTGCAGATAAATTTCAT 18569 30 100.0 38 .............................. AGAAAATGATCAAGGAGGCGGCGTAAATGGACGATTTG 18501 30 100.0 37 .............................. AATAGCCTGCCGTTTCACACGCAGGCTGGTTGTTTCC 18434 30 100.0 37 .............................. ATAAAGACTTGACCCAGGCTGACTGCTGGGGCCCACA 18367 30 100.0 37 .............................. CTTTATAAACTTTTTGTAGCCCACCAAGCCGGGACTG 18300 30 100.0 36 .............................. GCCTTCAAGCTCGTTATCCCCGTCCACGGACATCTC 18234 30 100.0 34 .............................. TAAACTCAAAGCGGCGCGGAAGCCGAGGTCGCCG 18170 30 100.0 37 .............................. TAGAAAAGCACAATCTTCCCAGGATTCGCTTCCATGA 18103 30 100.0 39 .............................. CACCGGCACGCCGAATGCTCTTGCAATTGCGCGTCGACT 18034 30 100.0 35 .............................. CTCGAAGCTAGTCTTAGGGCCTGGTAAGACCGGCC 17969 30 100.0 39 .............................. CATCGTGTCTAGCGTGTCGCATGATGCCACCAACCGGAG 17900 30 100.0 37 .............................. CCATTTTCCCTTACCTCCCGCTTACAGTCTTGGCAAA 17833 30 100.0 36 .............................. CGATTGCATCCTGGCTGATTCCGGCGCTCAAAAAAT 17767 30 100.0 37 .............................. AAAAAGAAGCCGCCGACATAATCGAACGGCTTCTATA 17700 30 100.0 36 .............................. ACTTCATAGACTTAATAGCCAGAGAAGAAATCCCTT 17634 30 100.0 37 .............................. CTACTCGCGCCAAAGTTAGCGCCGCCGGGGTCGCTTC 17567 30 100.0 37 .............................. GCCCTGGAAATTCATCAAACTTAAACGAATTTATTGT 17500 30 100.0 42 .............................. CCCTGCCGTAAACACGGCGCTCATCGGCTCGCATTTGTTCGA 17428 30 100.0 37 .............................. TTCCCCTTCTTGACGATGGACCCTCGCATTATATCCT 17361 30 100.0 37 .............................. CCTTGACACTGAATTTTGACCCTACTGATACAGGGCA 17294 30 100.0 37 .............................. TAAAAGCGAAGCTGGCAGGATGGGAGAAGGTAGAACC 17227 30 100.0 35 .............................. CGTATTTCTCCGCTTGCCGCCTGTTAGGAAACCAG 17162 30 100.0 37 .............................. TCCTCATCCACCTGCTGGAAGAGCGGGAAGTATCGCA 17095 30 100.0 36 .............................. GAGTTTTTGTGTATATTGCCCTGGCAACAGGGTATT 17029 30 100.0 40 .............................. ACCGAATTGAGGGCAATATTCTCGCAGTAGAAGAAGGCAG 16959 30 100.0 40 .............................. TTTCTGGGCCCCGAATACAAGGACTACGGTCTTGTCGTAT 16889 30 100.0 38 .............................. CATCCAAATAAGAGCTAAAAACCTCAGCGCTGCTCCAG 16821 30 100.0 36 .............................. CTCTCACAGCGGCGGATACGGCGGTATTTTATAGCC 16755 30 100.0 41 .............................. TCCGCAACGCATACCCAAAGGTACTACCTGCAACGCCCAGG 16684 30 100.0 35 .............................. TTTGTTCAAACGAGTTATACATAGAAACACCGTCC 16619 30 100.0 40 .............................. CCGATTTGAAGCTCCCGCATCACCGGCCAAGCGATGGCAA 16549 30 100.0 37 .............................. CCGGGTTTTCCTCATCGTCGCCGGGGACTTCAAAGGC 16482 30 100.0 36 .............................. TATATCTCCCGCAGGGCCTCTCTCTGCTCCTGCGAG 16416 30 100.0 39 .............................. CCGTTGTGCCTTCCGGGTTCCAGACTATCTCGGTAACCG 16347 30 100.0 36 .............................. AATGAAGAAGACGAAAATATGGAACCTGACTTGGTT 16281 30 100.0 39 .............................. AGGAATTCGTCGAAGGATAGTTCGTGCGCATTGAACTTC 16212 30 100.0 37 .............................. GATGTATTCCCCGACCGTAATCAATGAATTGTATACA 16145 30 100.0 36 .............................. TCGAATTTATCAAGGACAACCCTGAGGATATAAAGG 16079 30 100.0 101 .............................. GCCGTATCTCCTCCCTGGCCGCCTCCAGGATTCGGGGTTTCAATCCCTCATAGGTAGGCTAAAAACCCCGAATCCTGGAGGCGGCCAGGGAGGAGATACGG 15948 30 100.0 36 .............................. ATTCTCTGATTACCCTGCGCCAAGGTCAGAACAACG 15882 30 100.0 35 .............................. ATAAACAGCTCTTCCAGATCGCGACCCACTGCCTG 15817 30 100.0 35 .............................. GCGGATATGGCTTGCCATGAAACTGCCCTATACAG 15752 30 100.0 36 .............................. CAGTTTCCACCTCCATTAGAAATTTATCCTGGCTAG 15686 30 100.0 42 .............................. CCTGCGCTCGCTTATACGGTTGGCCATGCAGCTCGGCTTTCT 15614 30 100.0 39 .............................. AGCAATGCCTTAAAAGTCCTGGGTTTTGTGAATGCGAAA 15545 30 100.0 36 .............................. CCGTGCTGAACACTCACCGTGCAAGTACCTTCCCAA 15479 30 100.0 40 .............................. CCACTTGATGCTACACCACTGTATGCAGAGACGATACCTC 15409 30 100.0 38 .............................. AATGACCCTTCCTAAAGAGGTACGGGTTGCCCTTGGGA 15341 30 100.0 76 .............................. GGGGTGGGAATGTTGAGAGAAGAGCTCCGGGAGCTTGTGGAAGAGTATTGCCAATCTTTGGCGTTGGTAAGGAAGG 15235 30 100.0 38 .............................. TTGTTAAACAATACGGGCATTTTGCATCAATAGTGCAA 15167 30 100.0 39 .............................. TTCCGCTCTTGGGAGTAGAAACAAGCTGGATACCGGTGG 15098 30 100.0 37 .............................. TTTGTTTGCTAACTTTCATGTCCATTCTCGAATAATC 15031 30 100.0 42 .............................. TCTCGCCGTAGATAGGATGTTTCCACCTGCCAAGGCGGAAGA 14959 30 100.0 37 .............................. TCCTTTCCACTCCATGCCTCTACCTCCCGGCGGCAAT 14892 30 100.0 37 .............................. CCCCTAACAGTAATGTTTTTGCCTTTTGCCTGAAATG 14825 30 100.0 37 .............................. ATTCAGACTAGCGTTGGCGCTCGGCATGACGGTTGGG 14758 30 100.0 38 .............................. AGACCCCTTCGGCCCAGCAGTCCAGGGCCATGCACCGG 14690 30 100.0 40 .............................. CTTACCTCAGCTCTATTTCCTCGACGCACAATAACAACGC 14620 30 100.0 42 .............................. CTGGTGCAGAAGGGCCACATCAGACACTTAAATGCACGCTAA 14548 30 100.0 37 .............................. TCGGGCTCGGCCGCTAGAGAGATGCTTCAGGCATACC 14481 30 100.0 35 .............................. CTAAATTGACGAATTCGTCCTTCCACCGCCAGCAT 14416 30 100.0 41 .............................. CCCCCAGTCAGGAGTTCATCCAGTTTGTTGAGGTCAACATC 14345 30 100.0 36 .............................. ACGGCTGGCGTGCTCAAGGCCGACAGGTTGGTTAAA 14279 30 100.0 36 .............................. TTCAACGGAAGTAGGTCGGAAGTATCTCCCCGACAT 14213 30 100.0 36 .............................. TTACTACCAGGAACAGCAGGACCCCATGATAACGCA 14147 30 100.0 36 .............................. CTCGCACCAGCGACGTTTTTGTTGACCTCCAGCCTC 14081 30 100.0 37 .............................. TCTTACTGCCTATCATTTGTATCACCTCCTCTGTCTA 14014 30 100.0 35 .............................. CGGGAAAAATCAAGGCTTTTGCACCAGTTACAACA 13949 30 100.0 36 .............................. CATGTAAACGTCCCTTTTGTATCCAATACTGCCACG 13883 30 100.0 36 .............................. TTTTTTCCCGGTCTTTCGCAAGGTTTAGGTCAAAGA 13817 30 100.0 37 .............................. TACTTTTTACCTCCTTCCATAGCACGGATGGTGAATT 13750 30 100.0 36 .............................. CGCCCTAGATACCTTAAAGAGAAAAGCAGAAAAAGA 13684 30 100.0 36 .............................. TCTGCTTACGGTGCTTTGGTTTTTCATCCCTAAAGC 13618 30 100.0 37 .............................. TCCAGTTTGATGGAAGCGTCCACAAGGATTTCGTAAG 13551 30 100.0 40 .............................. TTTCCTGGACTAATAACATCCTGCAAGGCTATTTGTGCCC 13481 30 100.0 40 .............................. TTGGGCTCACCCCTTTCAGGCGGTTTGTTCCTTGCTTTTG 13411 30 100.0 39 .............................. CCCGCCCGACAATGCACCTCTACCCACATTTTATATTTT 13342 30 100.0 38 .............................. GGTGCAGAGTGGTAAGGAAGAGCAATAGGAAATACAGG 13274 30 100.0 37 .............................. GATTCTAAAGCCAATATAACCGATGTTTTGACTAAAA 13207 30 100.0 36 .............................. TCTACATCGAATAGGTCTTTTAGCCTGCAATCAAGT 13141 30 100.0 41 .............................. TTCCATCAACGATGTTCGAAATCAGGTTTTTGCCCCAATCA 13070 30 100.0 36 .............................. CCAGCCCTGACAACGGGCACTACGACGAAGGTTTTG 13004 30 100.0 39 .............................. ATAGCTGCTCAAAGACCTTCTGTGGGTACGTTGTTACCT 12935 30 100.0 36 .............................. AGCCCTTCTTCGCTTGCTTCTCCTACCGGTAGCTTG 12869 30 100.0 36 .............................. CAAGAAACTGCCGGTCATTTTCCCCGACATTACGAA 12803 30 100.0 37 .............................. GAAACCCGGTCATGTTCGACGAATTTATACCTGTCAA 12736 30 100.0 36 .............................. CTGAAAGACGATAGATTCGTGAAATACACCGAAACA 12670 30 100.0 37 .............................. TCCGTAGTGTCGCCTTAGGTTAGAACGGCAGGTCATC 12603 30 100.0 38 .............................. TGGAAAGACGGGAAGGCATATTTTAGGGGGGTGATAGA 12535 30 100.0 37 .............................. TGATTGAAGGCCACGGTGCTTGGCTCGGCGCTGATGG 12468 30 100.0 36 .............................. TCGTTCTTTTGGTTCCTAGTCCTTCGTCGAATATGA 12402 30 100.0 37 .............................. CATATGTAAGCATCCTCGCCGATATTGGTCATTTCAT 12335 30 96.7 37 ....................A......... ACGTGCCACGGAATAACCGAAGTTCAATAGTGTTGTA 12268 30 100.0 36 .............................. GTTTTCGTAATTGATAATCTAAACTATCTATATGGT 12202 30 100.0 36 .............................. TCGCACAGCGAAGCTAATTTAAGTCCTCTATTAAGC 12136 30 96.7 36 .......................A...... TCTCTACCAGCTGCCTGGCAGAAGTGGCGATGAGCT 12070 30 70.0 0 .................CTT.A.AAT..TG | ========== ====== ====== ====== ============================== ===================================================================================================== ================== 126 30 99.7 38 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : AAGAATTATACGGGGTAAGATGTTTTATCAAACTGCCGGAAGAACTGCAGGAAAAGTGGTCTAATATACCTCCGGAAATAGACGAGGTTAGAGATTATATAAGTGACATTAAAGAATTTATATTATTGAATGCCGAAAAAGGCGATATTGTTTTGGTGCAAGGAGACTATGGCGCGACGTACGAAATAGTTAATTTTTGCAAGGAAAATAATCTGATACCTGTTTATGCTACGACATAAAGGGTTGCAGAGGAGAAGAGGGAGAAAGACAGGACGATAATAAAAAGAACGTTCAAACACGTAAGGTTCAGGCAGTATTAAAAATGTCGTCGACCTCCAATAATGCAAAAACCCCCGGGGACCGACGACAGGGCAAAATGCTAATAGTGATAGAATTTATGCGGGGTGAGAAGGATTTTATGTATTTTTGTCGAATTATTTATTGAAAATTAACGCAATCTATTTTCTCTTTAAATCTTTTATTTTTTAACCATTTTACGG # Right flank : TTCCGAAAGAAGGCAATAAAAAACTAAAGATTCGTAATAATTAGCCGGCGCTTTCATTCTGACCCGGGTACAGCCCCGCCCAAGAGCACAAATGAGCGGCAGAGGGGAACTGGTCCAGCAGTGCCAGGGCCTCTTCAAAAGGGAGCATCCGCTTTCTTATCTCCTCATGCAGTGCAAAGAGGCCTAGTTGAGGGTCGGCAGCAATATATAAAGGCAAAAAAAAAAACGGTGCCCGATTAGGTGAGGTTATAAAGTAAGGGGGTAAGTAAAACGTGGCTAAAATTTTAATTTCTTCTTTGGGCACAGGGCGATTTAGTAAAAGCAACAGTTCAGAGCGGAAATATGACTATACGATTTATAAGTTCCAAAATACTGATAAAACTTACAAAACCCCTTTTATTGTGGAAGCCTTATGTAAGTGCCTGGAGATAGACAAATTGTATTTAATAGGCACTTCAAAATCCATGTGGGAAGAGTTCTATTATTATTTTTCTAATTCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 42534-29130 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000016.1 Fervidicola ferrireducens strain Y170 AN618_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================== ================== 42533 30 100.0 37 .............................. TCCAGTTTCAGCCCGATGCTGGTGATAGTGCCGAGTT 42466 30 100.0 38 .............................. CCGGACTTGCGTACCTCGTCCGGCAAAAACCTGCCACG 42398 30 100.0 36 .............................. AATCTTTGCCATAAATGCTCAACTACATCACCACCT 42332 30 100.0 36 .............................. ATGCCCCGGTAGGGCAGGCCGGGAGGCACAACCCAC 42266 30 100.0 36 .............................. CCATAATCGTTGCCGTGTCGATGATAGGGCCGCTTG 42200 30 100.0 38 .............................. CCGTTGTGCCTTCCGGGTTCCAGACTATCTCGGTAACC 42132 30 100.0 39 .............................. ATGGCTTGTCGCATTTCGCTTTGGAGCTTCTCTCGCAAT 42063 30 100.0 37 .............................. TCATCGGTTTTAAAGGTTACCTCTCGGGTACCTGCGT 41996 30 100.0 37 .............................. CGCCTTCAGGGCTCGCTACGCCGTCATGGGCGGCTAC 41929 30 100.0 36 .............................. AAGACCCCTACACCCTTGAGCAGGATGTGCGTGAAA 41863 30 100.0 36 .............................. TCGCGAAGGACACGGTAGACGTCAAGGTTATGAAGG 41797 30 100.0 38 .............................. AACCGAGCTTGCAAAGACTTTCGAGAACTTCGATACCA 41729 30 100.0 37 .............................. CAGGTTCGGGCTTCGCCAGTGTCTCTGTCAACACCTT 41662 30 100.0 37 .............................. CCAGAATTTCAGATTTCAGATTATAAACTCAAAGCGG 41595 30 100.0 38 .............................. ACTTCTTCCACGTTGTGCACCACTTCCGCAACGGCTCC 41527 30 100.0 43 .............................. TATTATGACACGGAAACGTGTCATTGTCAATAGTTTCCCCCAA 41454 30 100.0 40 .............................. CGGCCTTGCGGCCTAGACGCTCGTACTCTAAACTAGTTTC 41384 30 100.0 37 .............................. CCGTCCGCAGGAAACGCCAGCCAGTGCTCGCGGCTTA 41317 30 100.0 38 .............................. TCCTCATCCACCTGCTGGAAGAGCGGGAAGTATCGCAG 41249 30 100.0 35 .............................. ATAGTTTCCCCCAAAAATTTTTTCTGAATCACAAT 41184 30 100.0 37 .............................. CGCCTTCCGCCAGCACTACGCCAGGGTAGTTGTCCAG 41117 30 100.0 39 .............................. TACGGCAGGCAGAGAAGAAAATTCCTGCCTGCCGACATA 41048 30 100.0 40 .............................. TATTAGTCACCGAAAGGTCTACGGTATAGCCGCTAACACC 40978 30 100.0 38 .............................. TGTTGATGGTGTAGCCGCTTCCGCTGCGTCCTTGGTGG 40910 30 100.0 38 .............................. ACACCTTGGCCGGTTTCATGGGAGTCCCTCGGTTTCAC 40842 30 100.0 36 .............................. ACGGCTTCCTCAATATAATTTTCCATGGCCTTCGTG 40776 30 100.0 37 .............................. TGAGAAGGAGGAAAGAACCCCTCCTCCAGATATGCTA 40709 30 100.0 36 .............................. TATTGATCCGGCCCCTGGCATGGGTGAGGGTAAAGC 40643 30 100.0 36 .............................. ACGTTATTGATGGAGAAAAAGACCGTTTTATTGCTA 40577 30 100.0 39 .............................. ACTTTTTCTTTTTTTATGCTGGCCAGCATCCACAGCTCG 40508 30 100.0 39 .............................. ACGGAGGTGAAATAAATGGCTGATGGGCGGTATATCTTC 40439 30 100.0 39 .............................. TGTATCTTGACCTTGTCGCTCTTGGTGTCGAGTCCGAAA 40370 30 100.0 37 .............................. AAAGATGCCGAAATATACATACATGGGAAGGGGCCTG 40303 30 100.0 40 .............................. CATCGTGTCTAGCGTGTCGCATGATGCCACCAACCGGAGC 40233 30 100.0 38 .............................. AGGTCCGGGTCGCTTCTGCTTTCATCTCCTCTTTTGAT 40165 30 100.0 35 .............................. TTGCCCCTGCTGCTACATTGCCACTTGCTCCCGGC 40100 30 100.0 36 .............................. AATTTGCGCCGCCGCCATAATTGGGGCGCAGAAAAA 40034 30 100.0 38 .............................. ACGTAGTACCTAATGTCCTTCCAATTTCTAAGCTCAAA 39966 30 100.0 36 .............................. ATTTTTTGAGCGCCGGAATCAGCCAGGATGCAATCG 39900 30 100.0 114 .............................. GAAAAAGTCCCCACGATACCGATGGACGCCAGGCTCACCGATGGAGTAGGGCGAGGGCCTACATCCGATTCGTCCACGGCCACGCGGGGGACGATGTACTCAAGCGCCATTTAT 39756 30 100.0 38 .............................. CGGTTTCTTTGCCCGGCAAAGTGCCCTGGACGGAAAGT 39688 30 100.0 38 .............................. TCCTTATTATGGCCATCAATTTGCCCGCGTTCTAACCG 39620 30 100.0 41 .............................. CTCGCCTCCGCCACAGCCGGCCTATTTCCCAAGAGACGAGG 39549 30 100.0 37 .............................. GCGGCGTTTACGGTCGCCTGGACGCCCAGGAGCGCCA 39482 30 100.0 38 .............................. AACTTCGCGTAATACGTGGTTTTTTGGACCTTGAAGCT 39414 30 100.0 39 .............................. CCGTAAGTCACAACGAGCTTAAAAGTTCCGGTCTGGGTT 39345 30 100.0 37 .............................. TAAGTTGCCCCATCTGGACCTTTACGGTCTTTCCAAT 39278 30 100.0 37 .............................. AAGTAAAGAGCGGTGCAAAGACATACGACGGGAAGAA 39211 30 100.0 37 .............................. ATACTTTTCTTTAAGTCAGCATTTCTGCTTTGCAATA 39144 30 100.0 36 .............................. TATTCAGACTAGCGTTGGCGCTCGGCATGACGGTTG 39078 30 100.0 36 .............................. CCTGGCGAAGCGGGTTCTTGCCCGTGGCAAGAAAAG 39012 30 100.0 39 .............................. ATCCTCGTCTGAATGTCCTGCGGCACAAGCAAGCTGGCA 38943 30 100.0 37 .............................. CTTTTGGCACGTCTTGTGCCGGGATGTCGGTTTGATT 38876 30 100.0 37 .............................. ACACCATCATGCGGAGCTTAACCGACCTGTCGCAGTA 38809 30 100.0 40 .............................. ACGGTATTTATTACAATCAGCGGGTAAGTTGCATCCAGCG 38739 30 100.0 36 .............................. TACCATCCTTAATCTGCTCCCATTGCCCGAGTATGG 38673 30 100.0 36 .............................. TGGCGATATAGTTATAGTGCGAAGGCAAAGCGTAGT 38607 30 100.0 43 .............................. CATGGGAGCTCCTTCGGGAAATTTGTGAATTCGGACGCCTGAA 38534 30 100.0 38 .............................. TTCCCCTTCTTGACGATGGACCCTCGCATTATATCCTC 38466 30 100.0 39 .............................. TAGTCAAGGGGTTCTCTTTTTTTCTTCTGCTCATTTTTT 38397 30 100.0 35 .............................. ACCGAATTGAGGGCAATATTCTCGCAGTAGAAGAA 38332 30 100.0 38 .............................. TGCGGACATTCACAGTCGCCCAGGAATACGAAAAACTG 38264 30 100.0 38 .............................. CGAAACTGCGATGAAAGAACTCCAGAAAAGGAGTCCTT 38196 30 100.0 41 .............................. AACTTCGCGTAATACGTGGTTTTTTGGACCTTGAAGCTCGC 38125 30 100.0 36 .............................. TCGTTAGTATCCGGGGTATTTTCTGTTGGTTGTGTT 38059 30 100.0 39 .............................. ACTACCTTGAGACCATTAAGTTCAACATCATGGCCGTGC 37990 30 100.0 38 .............................. ATACTTTTGAAGGGAGAGAAGAAAGGTGACAATCAAAA 37922 30 100.0 38 .............................. CAGCATTTCCAGAGCTCCTATACCGAACAACCGTATTG 37854 30 100.0 41 .............................. AGCTCTAAACCAGCGCCCACAAGGCGGGCGCGCAGGTCACG 37783 30 100.0 38 .............................. ATTGTTTCAACTACGCCCGCAAATCTAAGGGCTAATTC 37715 30 100.0 40 .............................. CAAGTTCCTGCGGCGGCTGCCAGTTTATCGCTAGGCCGTA 37645 30 100.0 40 .............................. AACTTCCTGGGCTTGGACAGTTTCCGCTTTTTCTTGGCGG 37575 30 100.0 36 .............................. TACTCAAGAAGGGCTGGAACTATAAGAGGTGTGCAG 37509 30 100.0 40 .............................. CCAACCTGCCCGGGCTTATGCCGTCATATCTTTCCTCGTA 37439 30 100.0 37 .............................. TATACAAGACCATAAGCCGCATATAATTCTATTGCCT 37372 30 100.0 42 .............................. CCCGAAGACCCACGGCCTAAAGGAGTGCCTTATGTAGATTTG 37300 30 100.0 36 .............................. GGCTGCGCATCGCATCGGCAACCCTGAAGATTCGAA 37234 30 100.0 37 .............................. TTAGCTAACACCTTAGCCAATCGTCCATCTCCAGGTG 37167 30 100.0 37 .............................. TCGTAAAGCCGCACATAGAAGGCCACTGGGCCGAACT 37100 30 100.0 38 .............................. CCGTGCTGAACACTCACCGTGCAAGCACCTTCCCAACA 37032 30 100.0 40 .............................. TCCTCTTCGTCCAGGGAAAGGATTTCACGTAGCCGCTTGA 36962 30 100.0 36 .............................. CTCTATACTGCTTGTTTTCGATTTGTATCTTCCGTT 36896 30 100.0 44 .............................. ATATCGCCTGCGTAACATATCATAGTCGCTGTGCCGCCCGCATC 36822 30 100.0 36 .............................. CGCATTCAGGGGTATTTGGAAAGTTATCAGCGTTGA 36756 30 100.0 43 .............................. TCAAGAGAAGTGTGCTACTGCTATAGCGCGGGGTATCGGCAAG 36683 30 100.0 36 .............................. TTGAAATCGAAGGAGGGGAGGAAATGAAGGGTAAAA 36617 30 100.0 36 .............................. CCCGTATCTATGTTCCTGAGCCGCTTCGTGATGAGT 36551 30 100.0 36 .............................. TCTCCTTCATGGAAAGCTATCACCGGCCCTTTGTCG 36485 30 100.0 36 .............................. CCGGCCTGGATAAACTCGCTGAGTTTTTCGAGAAAG 36419 30 100.0 35 .............................. GGGCGAAAGCTCTAAGCGATGGGTCTTTTAGATGA 36354 30 100.0 35 .............................. CCTTGACGAAGTAATCCCTGGCGCACCTCACCAGG 36289 30 100.0 39 .............................. TCTCACCTCGGCGCACATAATCTGCAGGATCCTCCTGTG 36220 30 100.0 36 .............................. AAAGTGCATCTCTCTTAGGATAGAAATCACTTCTTC 36154 30 100.0 37 .............................. TCTCGGGAGCAGGAAGTTGCAGCGATTTCAAGGAGTC 36087 30 100.0 38 .............................. TGCTCCTGCAATTTCAATTTGAGCGGGATAAAAGCTAT 36019 30 100.0 38 .............................. TGGCACTCAATACACAGCAGTTGCAGATTATCCCAGTT 35951 30 100.0 37 .............................. ACCGCACCCTTACCGGCAGCGGACCCGCCACTTGGAA 35884 30 100.0 36 .............................. ATACCTCGTCTTGGTAGTATAAAACTTCAAGAGCTT 35818 30 100.0 37 .............................. TTCCACAAAGTAGAATTACAGTAGGTTGGCGGCCGAC 35751 30 100.0 40 .............................. AATGTGTTTTGCCGCACCCCGGCTCGCCGAGCAGGACTAG 35681 30 100.0 39 .............................. GTCCTTTCTCCTTCGGGTTTTAGCGAGAACGTTATCAAT 35612 30 100.0 37 .............................. TATATGCTCTTTCGCTTTGGGCCACGTAGCTTACGAA 35545 30 100.0 36 .............................. ATTGTTGGTTCATTTGCTCGGATATGCTGGAAAACC 35479 30 100.0 38 .............................. CGGGCTAGTGAAACGACATTTCCAACTGCTACCACTGG 35411 30 100.0 36 .............................. AGTGCGACAAATATGAACCGCATGGAGGCAGGAATA 35345 30 100.0 36 .............................. TCTGAACCAAAAAGTGATACTGAAGACAACGACGGG 35279 30 100.0 36 .............................. TCGTGCTTTCGGAGCAACCAGCGCAAACCATTCGAG 35213 30 100.0 39 .............................. TTCGGCGGTTCATCGAGGACTATCTTGTCGGCCTGGGGA 35144 30 100.0 40 .............................. CCTCCCTGACCGCTCAATGCATTAATTCGCTTTAAGACTT 35074 30 100.0 36 .............................. TCCCACACGTAGGAGTAAAACTGTGCTATCGTCTTC 35008 30 100.0 38 .............................. CATTGACACTTTGTTGCCAATCTTGACGATGTATGAGC 34940 30 100.0 37 .............................. CTTTGCCTGTTATTGGCGGTCTTACTATGGCTACTAA 34873 30 100.0 35 .............................. ATTTTAAATACTCTGTTATCTTGCTTCTAACATTC 34808 30 100.0 37 .............................. CACCTGAGAGGGAAGGGGCACGTACCTTTCCCTACAC 34741 30 100.0 39 .............................. AAGAAAAGCTATAAGTTGAGTCAAGTTAAACAGATAGGG 34672 30 100.0 38 .............................. TCTTTCTTTATTAGCTTCTTTACTATTCCTTCATCGCC 34604 30 100.0 37 .............................. TATCCGAACATACAAATGCAGGCCCTTCAACGGTCCG 34537 30 100.0 42 .............................. CTTTCCCCCGTTTCTTCGAAGTTTTCTTCCGTGTTTTCTTCG 34465 30 100.0 40 .............................. GTTTGAATTTAGCCTCGCCAATTTTGACTATATCTTTATC 34395 30 100.0 37 .............................. TCGTATTTGCTGGCACATTGTATTGTGAGCCTACTTC 34328 30 100.0 36 .............................. TGGACCATGCAATATATATCCACGCAGACGAGCGAG 34262 30 100.0 40 .............................. GTGGCATTATTAGCAACAGCAAACAAGATCAGACATACAT 34192 30 100.0 36 .............................. GGAGTAAGATGGGCAATCAGCATAATAAAAATTACA 34126 30 100.0 37 .............................. TGACCATGAAAACGGTCACCGCTACGGGGAAGACGTC 34059 30 100.0 37 .............................. TAAAAAATTTTTGTAGAAGAAGGATTTTTTTATTATT 33992 30 100.0 37 .............................. AAGAATGAAGCTAATTTGGAGTTAGGGGCTCCACAGA 33925 30 100.0 36 .............................. GAAAATAGGGATATTACATTTTGGCCCTCTCGTAAA 33859 30 100.0 38 .............................. TTGCTTCGCAGGCAAAAGTTATTGCATTTGGTGACTTC 33791 30 100.0 36 .............................. AATTAACGCAGGCACCAGGGAGGTAACTTTTAAAAC 33725 30 100.0 37 .............................. ACATGAAGAAACTCAAAGGGCTATATCCTAAGATTTA 33658 30 100.0 37 .............................. AGTTGCCGGTTGTGGACTTATCAACCCCGTCTGGGGT 33591 30 100.0 39 .............................. TCGTAAAGAACAGTATTCTTACCGCCTGTTGCCGCTTCA 33522 30 100.0 35 .............................. GCGACAATTGTGAGAGATATGAACTACACTTTGGA 33457 30 100.0 37 .............................. AGCGAAAACGTTATCAATCTCTCAGGAGTAATTTCCT 33390 30 100.0 38 .............................. TTCGGGCCCAGCAAGTCTCACTCCGTATTTCTCAGCAA 33322 30 100.0 36 .............................. TGCGTAACAGAAAGTCGCCAACAGGTTCTTCCAGAA 33256 30 100.0 35 .............................. CGGCTATTAAACAAACACCCAGCTTCATCAATTAT 33191 30 100.0 37 .............................. AGTACAAAATAATTAAAATGATGTTGACAAATACAAG 33124 30 100.0 35 .............................. GCTTATTGCTATGTCCAAACAAAAAACAAAGAGAA 33059 30 100.0 36 .............................. CCTCTCGATTTTCTGCGCATGACAGTTCGCATTCTC 32993 30 100.0 38 .............................. TTCCTCTTCTTCCTTTTCTCTTTCAGACCTAACCGCCG 32925 30 100.0 40 .............................. TCCTATCCGACTGTGCTATCAATATTACGTCATATCCAAG 32855 30 100.0 37 .............................. TCAGGCAGCATCACAGATAAATCTATGTTTATATCTG 32788 30 100.0 38 .............................. ACGGCTTCTTCGATATATCGCTCAATCGCTTCGGTTAG 32720 30 100.0 39 .............................. TAGCTGAAAACAGCGAGTATCACCAAACCGCCTACATAG 32651 30 100.0 36 .............................. TCGTTCAACTTCCGCCCGGTGCCGACTATTACAAAG 32585 30 100.0 37 .............................. GATTAATTGCACTTTGTATCGGCGGCAAACTAGCCTG 32518 30 100.0 39 .............................. GTTCGCATCCTTTGTAGGAGCGAGCGAAGACGAATTGAA 32449 30 100.0 36 .............................. CTTTCGCTTTGTGTATAACTGTTTCCACCGGATACT 32383 30 100.0 37 .............................. TTTTCCCTATTTCAGCCAACATTTTGGCCCAGTTCTC 32316 30 100.0 36 .............................. AGACCCTTGATATGAGCAGCTAGAGTATCCTCTAAA 32250 30 100.0 38 .............................. ACAATGACCTGTTTGCTCTTATTTCGAGTATAAAAGAA 32182 30 100.0 37 .............................. GTTATTGTGACCAGGGTAAAGCATGAACGGAGCGAAG 32115 30 100.0 37 .............................. TTTAGATCTAAAAAGTAGTCTCAAGCCTGGTGATAGA 32048 30 100.0 37 .............................. ACGGAGTTGACGATCCAACTCAGGAGCCGCAGCCTGG 31981 30 100.0 36 .............................. ATTCCTGTAACCTTTCTTTAACATCGGCATAATTCA 31915 30 100.0 40 .............................. CAAGTTGCGGAAAAAGATGTTTAATGAACTCGTATTTTTG 31845 30 100.0 36 .............................. TACACCTTCACGTCTGCACCCCAGGCGTAGTAGGTG 31779 30 100.0 39 .............................. GTATCTTGCCAGCAGGTATACCGTCGCCGCTACCGCAGC 31710 30 100.0 40 .............................. TCGACGACCTCCGCATCTCCAGCCGCGCCAGGACGGACGA 31640 30 100.0 36 .............................. CTCAGAGCGATGAGGAGCCGCTAAAAAGCAATAGCA 31574 30 100.0 38 .............................. AGTTTACGCCTAAGTAATTCCACTAAAAAACCTGCCAG 31506 30 100.0 36 .............................. CCGGTAAAAATGAAATATATCTACCCGGAAAGGGTG 31440 30 100.0 39 .............................. AGTGGAATACCACAAATTATCATATCGGAAGCTACACAT 31371 30 100.0 37 .............................. CCGATAACCTCAATCGTTATAATCGAGATTTTCTCAA 31304 30 100.0 37 .............................. ACAGCATACCATATCGCAACTGCTGATGTATACACCG 31237 30 100.0 38 .............................. AATTTTCTCGACTGCGACAAAAACTTTATCCATCTTGC 31169 30 100.0 37 .............................. CAAACTAATGTTCGCTATTATGGTTAAAAAAATTTAT 31102 30 100.0 37 .............................. TTCTCGTCTTCTTCCTTCTTCGCTGAAAACTCATATT 31035 30 100.0 38 .............................. TTTAGCACAAATGGCAATTCCACCACAAACCGCATATT 30967 30 100.0 37 .............................. ACTTCTAGCTCGACGCCGAGATAAAGCACGCCAGGTG 30900 30 100.0 37 .............................. TTGACTATGAATGCTGGATGCGGATTGGAGGGCCAAG 30833 30 100.0 36 .............................. GATACCGCCGAGATGGTCAACCTACCCGAAACTGGA 30767 30 100.0 38 .............................. AGAAAGTGTAAATTTTTGAACGGTGGCACCTTCTTCAA 30699 30 100.0 37 .............................. TCATCATAGACTACAGCGGCAAAATAGATGAGACGAC 30632 30 100.0 38 .............................. TAGTTCTCACGGCGTTTTAAAAGGTCGTTTGTTTCAAC 30564 30 100.0 35 .............................. ACGTTAAGCCTTTCAAGCATGCCGAACACCTCCTT 30499 30 100.0 36 .............................. AATTACAGAATCTTTGTAGAAGTACAAAGCGTTACG 30433 30 100.0 36 .............................. CCAATTCGTCAACGGCAGTCTCTATGCCTTCGCTTT 30367 30 100.0 37 .............................. CAACCCCCTTGCCGATAACTTTTTCCAGGAAAGTATC 30300 30 100.0 36 .............................. TTTCCAGCCCGGTAACTGCCACATTGAAGTCCGAAA 30234 30 100.0 37 .............................. GGTTCAATTCCACCTGAAACTCCTGCTATAAAACTTA 30167 30 100.0 37 .............................. TCACGACAGACAACAACAAAGTAAAAGTTTGCCGACT 30100 30 100.0 36 .............................. TTTTTTGATAAAAACTTTTCCCCACTTAAAAAGTTT 30034 30 100.0 38 .............................. AAAGGAAATTGATACTGCATTTTTGAAAACCTGTTTGT 29966 30 100.0 37 .............................. TTGTAAACATTATTTATTTCAATCAAATAATCACTCC 29899 30 100.0 37 .............................. TCTTTATCTTCCCTAAAGGGAAGACCGGATTTTTTAA 29832 30 100.0 37 .............................. CCATCCTCTAAGTTCTGGTAAGTTCTGGTTGGTTTTT 29765 30 100.0 37 .............................. TGGTTTCTATCAGTTTTCTCTTTGCTATCTCTTCGAT 29698 30 100.0 39 .............................. GCATAACCGATAACGGCCTGATAAAATACACCTTCCCAG 29629 30 100.0 37 .............................. TTGCAATACTCGGTAAATCTATTTCAAGCACATACAC 29562 30 96.7 35 .................A............ AAAGACGTAATGAGATGATACGCAAGCATTTCCAA 29497 30 96.7 36 .................A............ TCCCAGACGGCATCATCTACGTGGACGAGCCGTCCA 29431 30 96.7 39 .................A............ TTGCTTGCTGTATCAGCCTTACGTCGGGCATCTAGAAAA 29362 30 96.7 37 .................A............ CACCGCAATGCGCACATGATGCAAAGAGCCTATCGTA 29295 30 100.0 37 .............................. AACACTACGCGGCCGTATACTTCTTCACCGTTTGGGC 29228 30 93.3 39 ...............C.A............ GAGAGTAGCCGCAGTATGAAAAGTCACAGTTCTGGTCTC 29159 30 93.3 0 ..........C......A............ | ========== ====== ====== ====== ============================== ================================================================================================================== ================== 198 30 99.9 38 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : TTTGACAAGCGTTCTGCGGAGTGGGATACAGAGGGGATATCTGTACCTGTGGATCTGTTGGTTTATACGGAAGAAGAGTATGAAAATATGAAAACATCTAATTCAGGGTTCTGCAGAGCAATTGAAAAAGAAGTTGAATGGATTTATCCTTACTGAACCACGACGACCAGGTGCACCACCGTTTTGAGGGATTGTGCAAGGTAATGTGGCTGGAAAAGGGGAAAATGATAAAATGCGGAAGGGAAAACTGCTTCGGCTCTATTTTTAGAGCAACAAGGCCGTCCAAATACTTATATTTTTCTTGTTTTTGGTGACACAGAAATGTCGTCGACCTCCAATAATGCAAAAACCCCCAGGGATCGACGACAGAGCAAAAATGCTAATAGTGATAGAATTTATGCGGGGTGAGAAGGATTTTATGTATTTTTGTCGAATTATTTATTGAAAATTAACTCAATCTGTTTTCTCTTTAAATCTTTTATTTTTTAACCATTTTACGG # Right flank : AGAGATAAGAAAATATTTTAGAAAGAACAGATTATTAGCTTAGAAAAACAAAGTAAAAAATGAATGGTTATCTCTTGCAGGAAAGGGGGTAAAAATTTGGGGTTGATGCATGAAGGCTTCAGTAAAGAAGAAAAAATATTGCTTTTAGCTTCAGTTCTGCACGATATTGGTAAGTTTTACCAGAGAATAGGCGACGAAAATACTAAAGCAAAGATAGAAAAAGAATATAGCACGTTGATAAAATCTGAGGGAGCATACGGGCCAAGACACCAGGAGTGGGGGGCGTATTTCTGTGAGAAGAATGTCGGAATAAGCGAAGTAATAAGTGCAGTGAGGAACCACCATGACCCTATAAATATGGTAGATTTGATTGTTGCGATTGCTGATAAGATTTCAGCATATGAAAGAGAAGATATTGATGAAGATAAAGGGAAAGCAAAACAATTAATTTCTATCTTTTCAAATATTGAGCTAGACGGTATCGGAGCAGAAAAATTGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 51172-47096 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOED01000016.1 Fervidicola ferrireducens strain Y170 AN618_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 51171 30 96.7 36 .................G............ TCATATTGCGCCAGGGCAGTAGAGCTGAAGTTATTG 51105 30 96.7 37 .................G............ TACCACCTCCGGTAAGGGAAATACTGTTACCTGCACA 51038 30 96.7 39 .................G............ TACTCCCGAGGAGTGGGCTGTCATTGGCAAACGCATCGC 50969 30 96.7 38 .................G............ TTGACTACAATTTTGGTCCGCAGACGGACTACGGCACC 50901 30 96.7 36 .................G............ CTTGCACCTCCTTCATGCTACTTCACAACAAAAGTC 50835 30 96.7 39 .................G............ CAGCGGTTTTCTTTGCCGTGTAGATGCCGGTATCTATAG 50766 30 96.7 34 .................G............ CGGCCCCCAGCAGTGAACCACAAACACGCGCTGA 50702 30 96.7 38 .................G............ CTCGGCTCGAAAGCCTTTCGTTTGCGTATCGTAGGCTC 50634 30 96.7 42 .................G............ AAGTGCGCTTGATAAGGTCCGGTATATATTTCGAGCTGTCGT 50562 30 96.7 38 .................G............ CCCGGAGGGAAATGTATTCGTTGCTGTCCCATTTACAG 50494 30 96.7 36 .................G............ CAGACTTTGCAGTGATATTGGCCGGTTTTGGCATTG 50428 30 96.7 38 .................G............ TTTCTTGGGGTTTGCATGTAATAGTAAACACTCGTTTC 50360 30 96.7 38 .................G............ CTGCTTATAACAGTCATTTTCCGTCATGAATTTTTGAA 50292 30 96.7 42 .................G............ ATCTTACTGAAAAAGATATTCTTGGCCATTACGAAGCACACA 50220 30 96.7 36 .................G............ TATAATATCACGACATCGTTACCTTGTCAATAGGGT 50154 30 96.7 37 .................G............ ACAGCCACGCAGTAGGTTTTTCCCTGGTCATGTAAAA 50087 30 96.7 38 .................G............ ACTTTGTCGTCCAACGAGGAAACGGAAGAAGGAAAAGA 50019 30 96.7 37 .................G............ TCGAACATGAAAGGCGTGGGGTCTGGTGTACCGCCCG 49952 30 96.7 36 .................G............ TACTACTACCGGTATGAAATCCGCTTCCCTTTCTCC 49886 30 96.7 36 .................G............ TCCTTGTTATCATAAGTGCCCTCAAGCACCTTAACC 49820 30 96.7 35 .................G............ TTCGAAATGATGCCGTATATCGGGGGAAGAAGCTC 49755 30 96.7 37 .................G............ TGCCAACATTGAATTTTTATTCTTTTCACGTTTTGCA 49688 30 96.7 35 .................G............ AAGCGTATCGCCTTTTTTGACTATATACGTGTTTG 49623 30 96.7 38 .................G............ CATCGTAGCCGAGTGGCGGTATCCCACCGTTGAATTTC 49555 30 100.0 40 .............................. ACTTGCTTGTCTCGTTTCCAAAGGCATTACGGTGTCTACC 49485 30 100.0 40 .............................. TAAGAAGCCGGCGGTGAGCTAAAACACTTACCAAAGCTAC 49415 30 100.0 39 .............................. CTTTGGATGAGGCTCCATTGGCAACCAATAATGATTTGA 49346 30 100.0 38 .............................. TGCAAAGCAGCAACATAAGGCACGTGATCTCAGAAACC 49278 30 100.0 35 .............................. GTGCAAGTAGCGTGCGACCACGTCCATGTGGCCGC 49213 30 100.0 37 .............................. TTATCATTCAAATTCGACTTCTCCAAAACCTTCCTCA 49146 30 100.0 38 .............................. TATTTTTTTCCAAGCAATTTTATTTCCTTCATTGTCTT 49078 30 100.0 37 .............................. TGATTCCGAAATAGCTAATATACGTTCGGAATTTGAA 49011 30 100.0 41 .............................. TACGACAACAGACAATTGAGCACTGATAAAGCAAGTGACAA 48940 30 100.0 40 .............................. GTTTTTTAGAAAAACAAAAGGATTTTGAGCATAAAAGAAT 48870 30 100.0 36 .............................. TTGACGATATTAGTCGTTCTAAACACCATGCTCTGT 48804 30 100.0 35 .............................. GTAGGCCGCAGAGCGAAAATGTCCCCGTTGCGGTA 48739 30 100.0 42 .............................. TCTCTTTGGCCGCCGGCTTGTTGATGCCGAGGTCAGATATTG 48667 30 100.0 42 .............................. CATCGTGTGGCTCAAGTTTGTGCTCTTTCATGAGCTGTATGA 48595 30 100.0 34 .............................. ACATGAGCGATATACAAACCAGAGCCAGGGTAGG 48531 30 100.0 37 .............................. AGTATCAAACCTATATGAGCGAATTCCCGTTTTTAAG 48464 30 100.0 38 .............................. AACAATTCGAATTCTATATATTCCCATACCGCCCGTGG 48396 30 100.0 39 .............................. TTCCCCGTGGCGTCCAGAAAGTGGCTCCAGGATTTCCCT 48327 30 96.7 35 ...................T.......... ATGCCGATTTGAGCGAAGTAGCAGCGTCCTGAGCC 48262 30 100.0 36 .............................. ACTGTGAGGCTCTCAAAAACCACGTTACTCCACCCA 48196 30 100.0 36 .............................. TACTATCAACCTCCTAAGATTGTTATTTTCACTCCT 48130 30 100.0 35 .............................. TCGGTCCGGGCAGGGGAGGATTGTTCATAAGTAGC 48065 30 100.0 38 .............................. AGTTGACGATTTTCATTTTCATTCTATCAACCTCCAAA 47997 30 100.0 37 .............................. CTGTAATCTCAGCAGTGCCGTATAGAGCAAGCCGCTG 47930 30 100.0 36 .............................. ACCTTTTGCCAGTGACCCGACGGCGGCAAAGGCGAT 47864 30 96.7 37 .......A...................... GCAGAGAAGACAAGATTAATTTTGTTACATTGGCATC 47797 30 100.0 37 .............................. CAAACTGCAATCCATACCGGTTCTATGAAGAGAACTT 47730 30 96.7 36 .............................T TTGTGTTGTAACTTCTCCTCCTTACTGGGGATTACG 47664 30 100.0 39 .............................. AAAATTGCTATCTGAGCCTCATGAATAGCCTTTAAAAAC 47595 30 100.0 36 .............................. CCGGCTTGTAGTTATAGTCGTGAATAACGTCTTCGG 47529 30 100.0 37 .............................. CCCTCCTTTGGGCTGTAATTGGTATAACTTGTGGAGG 47462 30 93.3 38 ................C............T TTCGAAACTTTTTCATCTTTTCCTCCTTTTCCCTGCCC 47394 30 93.3 38 .........................A...T TAAGTGTTCGGTATACATTTTTCTAAGAATCCATACAC 47326 30 100.0 38 .............................. AGGCGGGCCTCTTTTTCGCCTCGGGTGACGTAGTTATC 47258 30 100.0 36 .............................. TTTACTTTTTTTAAATGGGAAGAAGGGGCTATCGTG 47192 30 100.0 37 .............................. CTTGGTCGCAACTGCCGTATTTCGTCCAACGTCCAGC 47125 29 76.7 0 .................CCT.A.A.-...G | A [47101] ========== ====== ====== ====== ============================== ========================================== ================== 61 30 97.9 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : ATATTTACCTTAATAGGGAAGAATATGATAACAAAGGAACATTTCGAAAAAAGCATGCAGGGGATTGTACTAAAAGAAAGCGGGATGAAAATCTTTGTGGAAGAGCTGGAGAATAAATTGTCAACAACATTTAATCACAGAACGCTGGGTAAAAATGTCTCTTACCGTCGACTTATAAGGTTGGAGCTGTACAAACTGGAAAAGCATTTAATTGGTGAAGAAGAGTATAAAGCATTTGTTGCTAAATGGTAGGTAATTTTACAAACTCCGAAAGAGAAATTTTAGGGATAAAAAAAGGAGGAGATGAGATGATCATTTAAGATGTCGTCGACCTCCAATAATGCAAAAACCCCCAGGGATCGACGACAGAGCAAAAATGCTAATAGTGATAGAATTTATGCGTGGTGAGGAGGATTTTATGTATTTTTGTCGAATTATTTATTGAAAATTAACTCAATCTATTTTCTCTTTAAATCTTTTATTTTTTAACCATTTTACGG # Right flank : TTCCGAAAAAAGGCAATAAAAAACTAAGCCCATACCCAACTGCAAAAATATGGGATAAAAATAAATCTATAATAAATCTATATCGACGTAATGACAAAAACCTAAAAATTAAGATGCTACCGTTTCGACCGTGACCTTCAAACCTAAAGATTCAAGCTTTTTCAAAGACTGCCGTATGACCATGTTGCGCCTTTTCTCTTCGTAATAATTAGGGCCCAGTTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAGTCAGGATGCTATGTGCTACCGCAACTGCTGCTCGATTTGAACCTCTTCGGGCAGCGATGCGGTGGTATTGACTAGAAAGATAAGTATCTTTTGCTCTGGAGGCGGCCCGGGCAGCTTCTATGAGGGCGCTTCGCAATTTTTTGTTTCCCTTTCGAGTCGTGGCAGACTTTTGCTTGCCGGCGCTTTCATTCTGACCCGGGCACAGCCCCGCCCAAGAGCACAAATGAGCGGCAGAGG # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //