Array 1 11834-12307 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 11834 35 100.0 40 ................................... GCATCCATCACGCCCAACTTGTTGATTTCGATTTGCACTA 11909 35 100.0 41 ................................... GAATTGCAGGTGAAGCCTGTGTACTTTGGCGACCTTTTGGG 11985 35 100.0 41 ................................... GATGGTTAGCAGCGCCAGGCGAATATTACACTATGGCACGA 12061 35 100.0 35 ................................... GTGGCGTGAACGCGTTTGCACGTGCCCTTGGTTCC 12131 35 100.0 37 ................................... AGATAACGCAGTTTGCTCTTCATATCTCCTTCCTCCT 12203 35 100.0 34 ................................... GCCAGCCCGCCTGCTCGCCGCTTGCTGCTGCCAG 12272 35 94.3 0 ................................GT. | A [12302] ========== ====== ====== ====== =================================== ========================================= ================== 7 35 99.2 38 GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC # Left flank : GGGTAGCCGCCTCGGGCTTGGGCAGCGCGTCCAGCAGGTACTGCTGAATGGCCGCCCGCACCTGGGCCGGAGAAATATCGGCAACCATGCCCAAATACTACCCCCACCCGCCCCCGCCCGACACCCGTTACAAAGAGCGTAAACCCCGCCCAACCCGCCAAAAATGCCTGCGCGATCGCACCCCACCTCACACAAAACCCAACCCGAAGCCAGTCCAGCACAGCACGGAAACCCTTTCACCAAATAACCCATTATGTTTTGCGCAAAATGCTATAATACTTTCGTCGAGCAATTCGACAGCGCACTTTGAAAGCCAGGTTTTGCGATGAATAAGGCAAACCCACGCCACAAAAAATCTAAAAGTGCGGGAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGGGCTGTGGATAACTCCAGTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGTGTTTAACGGGGTATGCT # Right flank : CACTCCCAAATGGCTGCCTTGGTGAGCTCGGCTGCTGTTTGGGGATTTGGCTTTATTACCAACAAAGCTTCTAAAAATGGAGTAAGTTTTAAAAATGGCAAAATTGGTTCGGAAATACAACCCCTACACAAATAAATTCGAGATGGTTCCAGAAGACTGGGTTTTGCGGTACAACCCTTTCCAAAACCGCCACGAGTTTGCCCCAGCGGACAACAGGTTCTCGTATCTGCCAACCAACGGCGAGTTTTCGGCCATTCCTGCGCCGCCGAAATACAACCCGCACCAGGAGACCTTTTCTCCCGGCAAGCGGGACTGAGAGCCGGTGTACAACCCGCTCGAGGGCGAGTTTGAAATACGGCCAACAAAAAAGGACGACCCCGAGTGGTGAAGTGCCGTTTGGGGCGTTTGTCCGGCAAAACCCGGCTTTGTGCGCGGTGGAGGTTGTGAGGGGGGTGGGGGTGCGCTACACTGGGTTACAGGAGGAACCAACATGGGCATTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1503505-1502600 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1503504 37 100.0 35 ..................................... AAACAAACTGCAATGTCCTGGATATCCCCTGCAAC 1503432 37 100.0 34 ..................................... GAGGCAGCAGTAGCTCAATATGCAGACACTCTCT 1503361 37 100.0 38 ..................................... TATACACTATATACATACCATTTACTTCTGCCGGCAAT 1503286 37 100.0 35 ..................................... CTACTCTGGCACTAGCGCTGGGCCCAAAAGGCCCC 1503214 37 100.0 38 ..................................... CAGCCAGCCGTTCACCGCTAACATCAATGTGCCCGCGC 1503139 37 100.0 34 ..................................... CTGCTGAGCAGCAGAGCGACAATTTTGAGCGCCA 1503068 37 100.0 34 ..................................... TATGCGTATAGCCCGCTGCTCGTAGAGCCTCTAT 1502997 37 100.0 35 ..................................... GATCGCCCGGGCAGTTTCCATGGCCTCGCCCGTGT 1502925 37 100.0 37 ..................................... CAACGTTACCTCACGCATTACGGGAAACAACGCGCAT 1502851 37 100.0 34 ..................................... ACAAAGGCGAGCGCGTCCGTCCTCCGCAAGCCCC 1502780 37 100.0 36 ..................................... GCCGGCGTTGCGGCTCCCGAGGTAGCCGAGGAATTC 1502707 37 100.0 34 ..................................... CTTGGTATCATCATAAAGATGCACCTATTATAAG 1502636 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : TGGAACGGCTAGACATTCTGGTGACCTACGACGTAAACGTGACCTCCGCAGACGGTCAGGCGCGCCTGGCCCGTGTTGCCAAGATTTGCAAAAACTTCGGTCAGCGGGTGCAGATGTCGGTCTTCGAGTGCCGCGTCTCGCGGGCCCAGCTAGAAGACATGGAGGCCAAGCTGCTCAAAGTGATCGACCCGGACAAAGACAGCCTGCGCATCTACACCCTGCCCGGTGGTCGCGAGCGTTGTTTGCGCGTGCACGGTCAGGACAGGTACACTGATTTTGACGATCCACTGGTGGTCTAAGCCACCCTGGCACTTGCTTTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTGGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCACGCTAGAATGAGGCT # Right flank : GGGTTTCCACCAGTCTGAGTTGCCACAGCGCCGCCTCGTTGCACTCGGGCGAAGCTTAAGCCAAAAACGCTTGTGAGCTAGGGAGGGGAACTCACAAGCGTCTTTAGAAGCACCCACTATAAGTGGGATGCATTATTTATGTCTGAATTGAACGTCTTTGGGTAGGTGAAGAAAGTCCTATATAAGTGGTTCAACTATCAAAGAATAACCGCAACAACAAAGGTAATAGCCAAAGTACCCACAAAAGCTGCGGCCAGGGTAATCCAAATTTTTCCACTTTCGCGCAGGTTCATACTCGACTGCACAGCCAGGTAGGCAAAATACACGTCAACAACCAGAGATGCGATCATCAGTAAGGGAATTAATAGGATGCCGATTAGAGTGACGATTAGAACTAGGTTTAGCACCGCAGTCAAAACGCTGATGGGCACCCAAAATAGCGCAAAAGTATAGGCCACATTGTCTAGTGTTCCGGTTCCTCCCTGGGACTTACCGACATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 3 1521736-1522565 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1521736 37 100.0 35 ..................................... GGCGGCCAGGAGGAGGGCCCCGGCGAGCGCTTCAG 1521808 37 100.0 34 ..................................... GAAGACGGCCCCCGCGACCCCCCCGATGGCCCCC 1521879 37 100.0 37 ..................................... TCGAGAGTGGATGGCCCGCTCGTAGAGCGCTCTAGAG 1521953 37 100.0 34 ..................................... CTTCATATATTCCTCCCTTCTGGCTATAGAATAG 1522024 37 100.0 37 ..................................... CTCAATGACGGACGCAGTGCCGGTTTGGAAGTCAACG 1522098 37 100.0 36 ..................................... CTCGCCCGTGAGGGTGATGGCCCGCAACAACCCCAC 1522171 37 100.0 35 ..................................... GCGTAGGTGCAGGCGGCAATCGCCGCCTCCACCGC 1522243 37 100.0 33 ..................................... GGCGAGGGCTTGAACGAGTTCCTTCATGCGTAC 1522313 37 100.0 35 ..................................... TTCGCGGGCGCCGGCGAGGGCGCCGGCCCCCTGAC 1522385 37 100.0 36 ..................................... TTCACTAAAAAATTTCCGCAACATAGACCCAACAGT 1522458 37 100.0 34 ..................................... CTCAAAGTTGATGTACACGCGGAAATCTCCTAGG 1522529 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Left flank : CGGCCCTGCTCGGCCAGAGCCTCTAGATTTGCTCCCAGCAGCTCCAGATCCCTCACGCATTTTTCATCATACTAAGCCGTGGGTGGGCTGCCCAGCCCACCCTAGCCGCCAGCACAACATTTGGGAATGTCGCCAGCAGTTTGCCCCGGCACCGGAGCCGGTGCAAAGAGGGCCAACCCTCCCAACAACAGAACCAGCGCAACCAACCAGCCGATTTGCTTTTTCCCGAGAGCAGAACGTGTCTTGTTCATGCCCTCCAGCGTCGGGGCGGGGTATGCACAGTTTGTGCAGGGTGAGGTAATCTAGTGGCTAGGTAACCGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAACCCCGTCCTGCACGCACGCTAGAATGAGGCT # Right flank : CTACACCGCACGCGACGCTCATCGTCGCCGAGCACGATGCGATTTCTTTTGAACCTAGTGGTGGATCACTCCTGGTCGGTGGATTCCTCGAGGTCGGGTGCTTCTTTACGCGGCTTGAGCAGAGGGAAGAGGATTACGTCGCGGATGCTTTCTTGGTTGGTGAGTACCATAGCCAGCCGGTCTATGCCCAGGCCCATACCGGCGGCGGGGGGCATGCCGTACTCGAGGGCCAGCAAAAAGTCTTCGTCGATCTCCGGTTCCTCGTCGTCGCCGGCCTCGCGGCGCTTAGCCTGTTCCTGGAAGCGCGCGCGCTGATCGAGGGCATCGTTGAGCTCAGAATAAATAGGGGAGATCTCGAAGCCGGCCACAAATAGGTCGGCGCGCTCGGTGAGGTTGGTCTTGCTGGGGTCGCGGTGACGCTTGACCAGTGGGCTGATGGCCAAGGGCACATCCACCACAAACGTGGGCTGAATCAGGGTGTGCTCCACGTAGTGCCCGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 4 1692871-1693122 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 1692871 28 100.0 47 ............................ GCGCGAGCTTGGGGAAGTTATGAGGCTTTCATTCATAAGCTGAGCAA 1692946 28 100.0 46 ............................ CGCGAGCCCTGGGTTAACTGACGGCCAACTCATAGTTCGTTGAAGT 1693020 28 100.0 47 ............................ GCGCGAGCTTGGGGAAGTTATGAGGCTTTCATTCATAAGCTGAGCAA 1693095 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================== ================== 4 28 100.0 47 GCCTCGTCTATCGCTCGAGGCCGGTAGG # Left flank : GTTGCAGGATGGGCCCCGAGACTGCAAAGCCCAGGGGGTTGGGCCGGTCGAGCACCACCACCCGCACCCCCCTCTGCCGGGCCGCCCCCAGCACCTGCACCAGGGTGGAGACAAAGGTGTAGTAGCGCAGCCCCACGTCCTGCAAGTCCACCAGCAGGGTATCCACCTGGGCGATGAGGGCCGCCAGCTCATCTGGCGTTTTTTCGTAGAGGCTGTGCGCCGGCAGGCCGGTAAGGGGGTCGGCGGCCATCTCGGGGGCCTCGCCGGCCTGCCCCGAGCCGTCCACCCCGTGCTCGGGCCCAAAGAGGCGCTCGATCCGGATTCCCTTTTGCAAAAGGGCCACCGCAGCGGGAACCAGGTCACGGGTCACCCCTGCCGGATGGCTCAACAGTCCAAGGCGCCCTGTTTTTCCTAGAAGGCTGGGTTCAGCGAGAAGCCGCTCGAGGCCGGTAGGCGCGAGCCCTGGGTTAACTGACGGCCAACTCATAGTTCGTTGAAGT # Right flank : GCGCGAGCCCTGGATTAGCTAACGGCAAGCTCATATTGTGTCGAGATGCCTCGTCTTGCGCTCGAGAAGATTTATCGCATCAGGCTTTCTCAAACATGCTGAAGTTGGTGAAGATGATGCGGTTGTCGCGGGCGAAGAAATTGCCAAGACGGGCGTGTCCGGCGGCCACGGCGGTGGGTTTGGCAATCATAATCACGGGCAGGTTCTGCGCAAAGAGAAGCTGCCAGCGATCGTAGAGGCGTTTGCGCTCGTTCTGGTCGCCGAGCTGCTCGGCCTGGCGGAAGATCTCCCAGATGTTTTTCTCCCAGGGGAACATCTGGTCGAACTTGGGCTCGCTGCTGCCCCGGTCGGGCCAGACTGAGCGGTGCCAGTAGTTGAGCTGGCCGCCCGGCTGCCAGATGTCCTTGCGCAACTGCGGGTCGGGCTGGTCGCCGTAGGCCATCAGGATGCTTTCGAAGTTGCCGCCGGTGGCGGTTGCCAGCAAGGTGCCCTGCTGGATG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGTCTATCGCTCGAGGCCGGTAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 2791976-2794470 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2791976 37 100.0 37 ..................................... AAATACTTCTGGGTGCTGGAGTTCCAGTCTCGCGGGG 2792050 37 100.0 34 ..................................... TGAGGAGGGCTAAAGCTGCACAGATACGTCGGCA 2792121 37 100.0 34 ..................................... CTATACTCATGGCATCTCCTTTCTTGGCCCCGGT 2792192 37 100.0 36 ..................................... TATTTGTGCTCGATTAGCTCCCGAGTTGTACAGCGT 2792265 37 100.0 35 ..................................... CCAAATCCGGGAGGGGATAGTGAATGCTATCCACT 2792337 37 100.0 34 ..................................... GTCAATATTGACAATCGCCCAGGTTTCGTCAATC 2792408 37 100.0 35 ..................................... TGCATGCACACACACGCGGCGGGCTGGCAGCGAGC 2792480 37 100.0 36 ..................................... GATGAACTGGTGACCCTTGCGCACCGCCGCAAGCAC 2792553 37 100.0 35 ..................................... GTATAGAAAGACATTGGAGAACTAATAACAGGAAT 2792625 37 100.0 36 ..................................... TTTGTCCGCCCGTCCCGGGCCTGTACCACCTGGAAG 2792698 37 100.0 36 ..................................... GAGAGCCCCGCTAAGGTGCAGGTAGCGGGCCTGCAC 2792771 37 100.0 36 ..................................... GCGCAGCCGGACGCGCTCGCCCGATTGTGACCCCGG 2792844 37 100.0 36 ..................................... CCGGGCGCGCTTGGCGATTGCCAGGCGCACTCGGGT 2792917 37 100.0 35 ..................................... GTGAAGCTCAAGAGAGCCGGCGACCCGGGTCGCTG 2792989 37 100.0 35 ..................................... GGCCACATCACTGCCGTCGCCCCAACCCTCAGATT 2793061 37 100.0 37 ..................................... GCAGGCTGGGCTGCCTAGGGCGGCTGGGCTTGCAGGC 2793135 37 100.0 35 ..................................... TACACGACAGCGTAACTCACTATTACGCCGCCATC 2793207 37 100.0 34 ..................................... GGCATCGAGGGAGTTCAGCTTCCCGCTGAGGTGC 2793278 37 100.0 36 ..................................... CTACTCTGACACCAGCGCTGGGCCCAAAAGGCCCCG 2793351 37 100.0 35 ..................................... ACGAGTTAGCGTAGCGGTTGGAGGAACCTCATAGC 2793423 37 100.0 36 ..................................... GCAACCCGACTTCGAGGCGGCGCTGCGGCTGGCGGC 2793496 37 100.0 34 ..................................... CCGGAGCACGAGCTGCTCGGCATCCCGTACCCGC 2793567 37 100.0 36 ..................................... CTTTGTGCGGATGTTCTCCCACACGGGGCCCTCATC 2793640 37 100.0 34 ..................................... CCGGCATGGAAGGTCTACAAATTGACGGCCCTCG 2793711 37 100.0 35 ..................................... TTTCCGCAGGCAATGGCCTGGCTAAAAAGTACGAG 2793783 37 100.0 35 ..................................... CTTCCCCCCGGGAAGAAAGCCCCACCCCCAGGGCC 2793855 37 100.0 36 ..................................... GATTTCCGCACGCCGCAGGAGATTGCGGCAGATGAG 2793928 37 100.0 35 ..................................... CAAAGAATCAAGAGAGCCTCTTTGCGAATCATTTC 2794000 37 100.0 35 ..................................... CTGCCTTCTACACGGCTAATGGCCGTGGTAGTGCC 2794072 37 100.0 35 ..................................... TCAATGAGGCCTGTGTTGTGCACGTGGGAAAAGTC 2794144 37 100.0 35 ..................................... ATGGTCTTTTGCGCTGCGCACCCCGGCCACCACCG 2794216 37 100.0 36 ..................................... CTGGACTTCAGAAATTTATCGACCGCATCAGCATCC 2794289 37 100.0 35 ..................................... ACAGAGGCGCTCACTACAGCAATGTCGAAAATCCC 2794361 37 97.3 37 ..............................C...... GACCTGGCTTGGTCTTAAACCAGGCCTCTCCCTGGGG 2794435 36 94.6 0 .........-.....T..................... | ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 99.8 35 GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Left flank : CTGGCCCGGCTCAAGGTGGCTACCCAGGGACGCTTTTTAGCCCTGCGCACCATCGGGTCTACCCTGGTAGGGCAGGGCCTGGATACCGCTATTTTCCTGCTGATAGCCTTCTATGGCATCTGGGACAACAACCTGCTTTGGACAGTGTTCGTTTCGAACTACATCTTTAAAGTTGGTATAGAGGTACTGTTCACGCCCATTACCTATGCCGTGGTGGGCTTCTTGAAGCGCGCTGAAAACGAGGATTATTACGACCGCAATACCCGCTTCAATCCGTTTGCGCTGCGCTAACAAATTAGTCTCGCATATCTGGTAAAATGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAACTGGCTAGGGGACATTGAAAACCCGCTTTCCCTCCACCTTCCCCCACCCTGCGTCGGAAGCTTTTTTTGGGGGGTTCGCGCAAACGGCCTCTTGAGCCCCGTCCTGCACGCACGCTAGAATGAGGGC # Right flank : CCATGATTCCTCTAGACGAGTTGGCCAGACTCTTTCCCCCTACGCGCCTGCTGCACAAACCCGGCGAGTTGGCGCCATACGAATCCGATGCGCTCACGGCCTTCCGGGCCCGACCGCTGGCGGTAGTGCTACCCGAAACCCATGAAGAGGTGGTGGCCGCGGTGCGCTGGTGTGCCAAGCATCAGGTGCCCTATGTGGCCCGCGGCTCCGGCACCAGCCTTTCGGGGGGCTCGCTGCCCATTGAGGGGGGCCTGGTCATTGGGCTCAACCGCATGAACAAACTCCTGCGGCTCGAGCCCCAGGAGCGCATTGCCGTGGTGCAGCCCGGCTTTATCAACTTACAGGTCTCGAATGCCGCCGCCCCCTATGGCCTCTACTACGCCCCTGACCCCTCTTCCCAGCCGGTCTCGACCATTGGGGGGAACCTGGCCTTTAACTCGGGCGGGGCCCACTGCCTCAAGTACGGCATGACCTCCAACCACGTGCTGGCGGCCAGGGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 6 3053624-3049068 **** Predicted by CRISPRDetect 2.4 *** >NC_013946.1 Meiothermus ruber DSM 1279, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3053623 29 100.0 31 ............................. AAAGCACCCTGTCCTCAACGGACCGTTCAAC 3053563 29 100.0 33 ............................. GCCGATGCCGTGTCCCCCAGCACGGTCAGCAGC 3053501 29 100.0 33 ............................. AGCAAACGGGAAAAACGAAAAGAGCAGCGCCGC 3053439 29 96.6 32 ............................A GATCCGCCCCACTTATCAATCGGGGCGTCCCC 3053378 29 100.0 32 ............................. AATAGTGGCCACAGCCACAGTAGCCACCTGCA 3053317 29 96.6 32 .....T....................... ACGTATACTGGACCTACAGGCTAGTGGAGCGG 3053256 29 100.0 31 ............................. GGCAGAGCGTCGTTGCACAGCCCAGCGTCGC 3053196 29 100.0 33 ............................. AAGTCCCTGAGCCGTTCTTGATTGTCCCGATGA 3053134 29 100.0 32 ............................. GTGCCGGATCCGATGTGCTGGGTGTAGAGCTG 3053073 29 100.0 32 ............................. AGCGCCTGTACGGCAGCCAGGTGCCCGGCGAC 3053012 29 100.0 32 ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 3052951 29 100.0 32 ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 3052890 29 100.0 34 ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 3052827 29 100.0 32 ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 3052766 29 100.0 32 ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 3052705 29 100.0 34 ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 3052642 29 100.0 32 ............................. GCGGCCTGCCCCTGGGCCGCCCCCGAGCCTGA 3052581 29 100.0 32 ............................. CTCTTGTAGCGCGTTTTGAGCCGCCCGGTACA 3052520 29 100.0 32 ............................. AGAAAGCGCAGCACCGGCTTGGGCTCGTCGGA 3052459 29 100.0 32 ............................. AACTGCACGAGCGCGAAATGCTCGGGCAGGAC 3052398 29 100.0 31 ............................. CTCCCTCAGGCCCTCGACTGGTACCCGGTGC 3052338 29 100.0 32 ............................. CCCTGGTCGGGCAGGGAGCCCCGCCCTACAAC 3052277 29 100.0 33 ............................. GGCCATGAGATGCTCGAGCGGCCATGCGCCAGC 3052215 29 100.0 32 ............................. TCTTAAGCCTGATCTTCGGCCAGGAGTACGCC 3052154 29 100.0 33 ............................. TCCTGTAGCCCTACGTCCAGACCGAGGGTCTTT 3052092 29 100.0 33 ............................. GTGGACATCGGCTTCAGCAACCCGGCCCTCGAG 3052030 29 100.0 32 ............................. GATGGGGCGAAGTCCCGATCGAGAAGTCGCCC 3051969 29 100.0 33 ............................. CTCTGCGCCGCCTCGGGACTTGTGGGGGTTGCC 3051907 29 100.0 32 ............................. ACGGCCTGACCCTGACCCTCTCCATGCGCGAG 3051846 29 100.0 31 ............................. CATGAATATCCGGATTCCCACTTTAGCAGGG 3051786 29 100.0 33 ............................. GTCATTCTGGCGCTGGGCCTGGACAGGGCCCTC 3051724 29 100.0 32 ............................. TAGCCATCGGCGCGGAGCCCATCGCGAAATGC 3051663 29 100.0 33 ............................. GTGCCACCGCAGTACACGTCCAAGACGTGCTGC 3051601 29 96.6 32 ............................C TGCGCCCGGTGCTGAGCCGGTTGGCCGTGCGC 3051540 29 100.0 32 ............................. CGCAGGGCATCGGCCCAATCGGCGGGGCCCCA 3051479 29 100.0 33 ............................. GAGGGAACTGGCATGACCTGGCGGGTAGCGCGC 3051417 29 100.0 32 ............................. GGTCTCAGACGTACCACCAGGGGGGTAGAGGA 3051356 29 100.0 32 ............................. CTGAGGATGCCGCCACACGGTATCAGGCCACA 3051295 29 100.0 32 ............................. CCGCGCAGGTTGTGCAAGGCTTGCTTGGTGAA 3051234 29 100.0 32 ............................. TGAAGCGTCCTTTTTTGTCACGCTTGGGCAGT 3051173 29 100.0 32 ............................. TGCTGAACCGGATGACCGGGCCCGCCTCGAGC 3051112 29 100.0 33 ............................. TACTCGAGCACGTCTAGCCCCCTAGATGATGCC 3051050 29 100.0 32 ............................. TAGGGCGGCCCCTTCGTCCCCCAGCGCTCGTA 3050989 29 100.0 33 ............................. GAAAACGATCACACCAAGGACATGGAGCGCTAC 3050927 29 100.0 33 ............................. GTCAGGTAGGGAAGCCCGTCTTTTGCCCTCGGC 3050865 29 100.0 33 ............................. TGGACATTACACAATGGCGCGCTACCATGTAAT 3050803 29 100.0 31 ............................. GGCCACCTGCCGTTCAAAGATGGTGGCCGTC 3050743 29 100.0 33 ............................. TAGGGTTCAATCCCCCTTCCCCCGGGCCCACGC 3050681 29 100.0 32 ............................. GTGGGCTCACTTCCCTTTTCCCATGTCGCCCC 3050620 29 100.0 32 ............................. GTCAAGCTGCCGCCTGAGCTTGTGCGTCGGGT 3050559 29 100.0 32 ............................. CTTTTCGATGCTGCAATCGCCGCTGCTGGCCG 3050498 29 100.0 32 ............................. ACACTCGGTGACGCCGAAGTGCGTTTCGTTGT 3050437 29 100.0 32 ............................. GTAGGCCTGCATATAGCCGATGGCGCGGTGGA 3050376 29 100.0 30 ............................. ACATTGTGTCCATACTCCCGGCCACCAGTG 3050317 29 100.0 32 ............................. TCCCTGGTTTTTGCTTTCTCCCCAAGAGACTC 3050256 29 100.0 32 ............................. CCCCACCCCCGCGATTCGGCGAACGATGTATC 3050195 29 100.0 31 ............................. AGCAGAGGCTGCCCGCCCAGGCCTGGGGGCC 3050135 29 100.0 33 ............................. CTTTGAGCGCAACCAGGCTTTGGCCTTTTCCCC 3050073 29 100.0 32 ............................. ATGGCGTAGTCGTATAGCGGCCATGCGTTGGT 3050012 29 100.0 32 ............................. ACATGGTCGACGCAGCGGCATACGCATTTCAT 3049951 29 100.0 32 ............................. ACCCGCACCTGGACGGTGCGGGTCAACCACCG 3049890 29 100.0 32 ............................. CTCAGCTTGGGGGTAACCGCACCCAGCCCCAG 3049829 29 100.0 33 ............................. TATATGGCCTGCGACAACATCAATGCGGCAGTC 3049767 29 100.0 32 ............................. GGCAAGAAGCGGCCATGGAATGGGGCCCTGAA 3049706 29 100.0 32 ............................. GCGGCCATCGTGCGGCGCGCAAAATCCGAGGG 3049645 29 100.0 32 ............................. GATTGCAAAGGCTTCTGTGGTGGAAGACAAGC 3049584 29 100.0 32 ............................. ACAGATACTTCGTATCTGTCTCCTACACATGA 3049523 29 100.0 32 ............................. GCACCCCGCAGATCACGGGAGCCATCCACAGT 3049462 29 100.0 32 ............................. ACCGATATTTGCTCAGCGTTTGAACAGTTCGA 3049401 29 100.0 32 ............................. CTATGGGAGAAGGACAGAAGTTGGAACCACAT 3049340 29 100.0 32 ............................. GCGTGGGCACCAGAACAAAGCGGCCCGACTCC 3049279 29 100.0 32 ............................. CGATGCCCCCGCACTGAGCGTGGACGACATCG 3049218 29 100.0 32 ............................. TTCGATGGCAACTACTTTGAGACTGGGTTCTG 3049157 29 100.0 32 ............................. TTGAGCGCCCACCCCTGCTCGTTGCCCACCGC 3049096 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 75 29 99.8 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCTTCGATGCCCTCGAGACCCCCGACCCCTACGCTGCCGACCCCGCAGCACCGGGCGATCTATGGGATCCCGACGGCCCGGTTCCAGGTGGGATAGCCTATGGTAGTGATCGTCCTGGAGAAGGTACCCAAGACCCTGAGGGGTGAGCTCTCGCGCTGGATGCTCGAGGTGAGTACCGGTGTGTTTGTGGGCAGCGTTTCGGCGCTGGTGCGCGACCTGCTCTGGGAAAAGTGCGTCGCCAAAAAAACTGCTGGACGCTGCTGCCTGCTCTACCGCACCAACAACGAACAGGGCTTTGCCATCCGAACCCATGGCGACACCACCCGCACCCTCGTAGACTTTGACGGCCTGACCCTGGTGGCCGTGAAGAATGCCGAGTGGGAGCGTATGCACCAAAAGCGAAGTAGAAAAGCCAAACCAGGGGTGAATCTTGACAATCAGACTCGGGATTCTGACACTTCCGGGGGATCGAGCGGCTAGTTTTGCTGTTAGAATCAAGT # Right flank : AAATGAAGCCTTTGTTGGTTACGTACCTGCGCGGCTTTCAGCTAGCACCTTCTGCCACGCATCCCGGAGCCACTCCTGGGGAGTAAGCAGCCGAACTGTACTCAGCAAATCCCAGTCGTTATTTTTGCGGGCAATCTCCACCATTTGCGGCCAGAGCCGCTCAAAGTCCTCGCGGGTATAGCGGCCTTCCCGGTACAAGATGTACATTTCGTCGTACAGTTCGGATATCGGGTGGGGAGCCATAACTACCTCAAGCTGTTCAGAAACCAGTCTTCGGGTTCAACATACGCACCGCATTAAGTGCCTCGTAATCTCCGCCAGAAGCCTCGATTGGTTACAGCCAGAGCTGCTCAAACTCTTCCTATGTATAACAGCCATCGCGCCAAAACGAATAGATGGTGGTCGTTCAGGGTTGCGACGGCTGGCTTGTTAGTTGTCACGTAAACTCCCGGGCACTCCCTACATTATAGCAAACCAGGAGGGGTCGAAGCTCCTGAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //