Array 1 50369-48753 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHU01000045.1 Haloferax volcanii DS2 contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 50368 30 100.0 36 .............................. GAGGAAAGGTCCGAAGATGCCCTCGAATCTCAGAAA 50302 30 100.0 36 .............................. GAGGGAACGCACGTCTGCGGCGACTTCGAAGTCACG 50236 30 100.0 35 .............................. CGGTCGACGACCGGTTCATTGGTTCCACGCCCCCA 50171 30 100.0 36 .............................. ATGCCCGACCTCGTCCGAGACAACATCGTCGACGTC 50105 30 100.0 35 .............................. GACGGCACTGGCGGCTATGGGAGCATGCCGAACCC 50040 30 100.0 35 .............................. ACAGTTAGTGGGGTCTTTGTGGAGACCGAATCCCA 49975 30 100.0 34 .............................. ATATCGCTCACCAGCTTCCATCCGAGTCGTTGGT 49911 30 100.0 37 .............................. TTTCAACGTCCATTCTTTCGATAATCTCGTAAATCGT 49844 30 100.0 35 .............................. GCGGAGGTCGCTGACAGCAACGACGGTATCGAGCG 49779 30 100.0 36 .............................. AAAATCCTCGATTACTACGAGATCCCACGGAAGATT 49713 30 100.0 37 .............................. GTCCTCGCCCTCCGGGGCCATGTATTCCTCGAACACC 49646 30 100.0 36 .............................. GCGTAGGCGAATGTCAGCGCCGTGATGGCGACGCGA 49580 30 100.0 34 .............................. GACATCCGACTGCGACAAGAGACTGAACACGGTG 49516 30 100.0 37 .............................. ATCGAGTTCCGCATCGACGCCGACAGCGCATCGGACG 49449 30 100.0 37 .............................. GTCGAAATCCCCGCCGGAGCGAACGACCTCGACACCG 49382 30 100.0 37 .............................. ACCGCACTTGAAGCGGTTGACAACTCGGGGGCAGCGG 49315 30 100.0 37 .............................. AATTTTGCAAATGTTGTCGACACCTCAAACGACACGC 49248 30 100.0 36 .............................. TGGATAACGCCATGGCGGTGGGCGACGGCGAAGACT 49182 30 100.0 39 .............................. CGGATCGTAGACGTAGATGTCCAGGCGGTCGGCGTCCGA 49113 30 100.0 37 .............................. CGCCTATCGAGTGCTTTGCGAGGGGCGCGAGGAAAAG 49046 30 100.0 36 .............................. GGCCGTCGCGAGCGCTGGCTCGGTGGCGGTCCGACC 48980 30 100.0 34 .............................. TCCGTCGACGGGACTGCCCAGGCGCTCATGCAGT 48916 30 100.0 38 .............................. GCTCATGCGTCGACACCTCCGCTCGGGTGGTTGCCCGC 48848 30 100.0 36 .............................. TCGACTAACGTGGTCTCGTTCGGCGGCACGGTGGAT 48782 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TCCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCATCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCGCCTCGAATTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACATCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCTGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGACTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 54839-57448 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHU01000052.1 Haloferax volcanii DS2 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 54839 30 100.0 37 .............................. GCAGGCATCTCGACCGGCGACCTCCCGGAACACTTTG 54906 30 100.0 37 .............................. TGCACAAGTCCATCAAAGAAGACGGTTACACGCAACC 54973 30 100.0 35 .............................. GTCCTCGACGAAGCCGGGGTCCAATTCGGGAACCG 55038 30 100.0 37 .............................. GCGACCGGGCCGAACGAAACCGCGCAGAACATCACGG 55105 30 100.0 36 .............................. AGGACACGTCTGCGCTGCGTGCGCCTACTGCATGAG 55171 30 100.0 36 .............................. GCGCACGCGTAGGCCCCGAGCACGAACGCGACCGGG 55237 30 100.0 37 .............................. TGATTCTCGAAGGAGCCGAGCGCGGCTTCCGTGGAAT 55304 30 100.0 35 .............................. GTGAAGGTCAAACGCTTCTGGTAGGCAGGCCCGCG 55369 30 100.0 36 .............................. AGTCTGCGGTCCCGGCGTTGTGAATGTGAACGACTT 55435 30 100.0 35 .............................. GCCGATTGCGATATTTTTCAGAATCGGCGACTGTT 55500 30 100.0 37 .............................. GGTGTCCAAATGTCGCCAGAGAATTCCTGTCAAGCTT 55567 30 100.0 37 .............................. TGACGCTGTTCGATGTCTTTCAACTCGTTTGTCTCTC 55634 30 100.0 35 .............................. GGCCTCCGCGGCGGGCGGTAAAGCCGATTCATCCT 55699 30 100.0 35 .............................. GACGGTTCCGTTCTCGTCGTAGATCGTCACGTCCA 55764 30 100.0 36 .............................. GCGCGACAGAGCCCGTCGAGATCTCCGAAGGCGAGA 55830 30 100.0 37 .............................. TCTCGGCAACAGACCCTGCGTTAGTAATTTGGACACT 55897 30 100.0 36 .............................. AGATTGTGGATGAACGTCACGCCAAGCCGACCGGGA 55963 30 100.0 37 .............................. GACGAGACGATCGGGCTTCTGGAAGACCAGGAGGAAG 56030 30 100.0 34 .............................. TTCAGCGACTACGACCTGATGCGCTCCGATACAG 56094 30 100.0 37 .............................. ATGATCCGCGTGGTCCGGTTGACGTTCGGCTGCTCTT 56161 30 100.0 35 .............................. TATCACCCGTGGGCCGGTGACAACGAGGACCACGA 56226 30 100.0 35 .............................. ATTTTGCCGGACGCTTCGGGAGTTGATTCATAGTT 56291 30 100.0 37 .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGA 56358 30 100.0 36 .............................. TAGTCCGCCCCGCACTCAGGGCACGCGTCGTCGTCC 56424 30 100.0 36 .............................. TGCGCGTGCAGCTCGTTTGATGAGACGTCACCACCG 56490 30 100.0 36 .............................. GAGGGCGGGGGCAACGTCGCGGAGATGCAGGACCTC 56556 30 100.0 37 .............................. GAGACGATTGAGTGGGGCGGTGACTCCGCTATGGCAG 56623 30 100.0 38 .............................. TATTACAATTGCCAAAAACCACGTTGCTAATAGCTCCG 56691 30 100.0 36 .............................. GGGAGTGTATGCGATATCCCTTAAAACCCCCTACTT 56757 30 100.0 36 .............................. ACTCGTCGCACGTGTTAGTTTTCGGTTCGCTCGTTT 56823 30 100.0 36 .............................. GGCGGGCTCGGCAGGAGCTCGAAGACCGCTTTTCGG 56889 30 100.0 35 .............................. ACCGACGATGTAACTGTCTCGGCGGCAACGCTCCC 56954 30 100.0 36 .............................. ACTCTCCGCGTCCGACTGCTCGACATCCCGACATCG 57020 30 100.0 36 .............................. ACCGCGAAATCGGCGTCAATCGTCACGTCCGGTAGG 57086 30 100.0 36 .............................. CACTCTGCGAAGCCGTCGATGAAGTCCTCGAACTCC 57152 30 100.0 35 .............................. TTTTCTACGAGGTCGGAAACGGACACTTCGACGTT 57217 30 100.0 37 .............................. TCGAAGCCGCAGACGACGGCGCAGAGAGCGGTATCAC 57284 30 100.0 36 .............................. CGGCTCGACGACGATTACTTCGCGCTCGAAGCTCGT 57350 30 100.0 39 .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGATG 57419 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCACAACCGGCCGACTGAGGCCGGTGGGACTCTCGGTTGATTTTTCGCACCGCTGGTCGTGAGGAGAGGAGATTCGTTTCCGTCGACCCTCGGGGGGTACGGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGGGTTTCAGACGAACCNGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : TCTAGACGGCACTGTCTCGGAGGGTGTGTCAAATTCACTGACAATAGAATAAAAACGTCGGCAACCAAGATGGAGGCACGGACATGAGGCCCCTTGCCAAGTGATTTTCAGGAGAACCGCCCCGGATTGAAGCAAGTATTGACAAGGGAAACCTCATGACACCCATCAGCCGAAGCGACAAACTGGGTGAGCACAGACGGTTCTCAACCGCTCGCGCGCGCTCCAGAAGTTAGTCGTACGCGAGAAGTTTCGCGCCATCGTTCTATTCATGATAGACATTGTGATATTTTGGATTAGCTACAAGTACTGACAATGAGAAGTGTTTTTCGTGGCACACGATCACACAACTTTGAGAGGGGTGATATGAGGCGTGCGTATAGAATTAGCGCTCGATGCCGTTGCTGATGCGGCCTACGACCGGTCTTATTTCCATAAGGCACGCGGACGCATCTGGCGCGGCCTCGAGAACGACGACACGTTCTCGGAGACCCACGATTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 67759-68512 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHU01000052.1 Haloferax volcanii DS2 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67759 30 100.0 38 .............................. TCGGGGTGGACGTTCTGCCGGGCATAGGCAATATATTG 67827 30 100.0 36 .............................. GAGCGGAGTCGATGGAAGCCGAGACGGAACAACTGT 67893 30 100.0 34 .............................. TCGGTGGTGTCGCGTATCGAATCACACGTCTGTG 67957 30 100.0 37 .............................. CGCTGGCGTCCGAGTAATTACGCCTGCCCCGAGTGCG 68024 30 100.0 36 .............................. AGCACCTCCGTGGGAGTTGTCGATTCTATCGAAGCG 68090 30 100.0 35 .............................. TGCTAGTCGGACCGAGGGAGGAAGCCTCTCGGATC 68155 30 100.0 37 .............................. GACAACGTTCGCCACCCCGAGACGGGTAACTTCACAG 68222 30 100.0 35 .............................. TGTGGGGAACAAGCAATAGAGGACTTTGAAGGATG 68287 30 100.0 35 .............................. CGTCCGGCGACCCGAATATGTCCGTCCCCGTGCGG 68352 30 100.0 37 .............................. GGCGACAACGACGGCAACCTCGAAGTCTGCGCCGCCT 68419 30 96.7 34 ......................G....... GGCACCTACGACCGCCGCTACAACGACGACCCGC 68483 30 80.0 0 .......G......TG......A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.1 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Left flank : ACTCGCATCTACCGTAAGTTGCTCCGCCGACGTTTGGAACATCTCCAGTATTCGGTCTTCTTCGGTGAGCTCACAGCAGGCCAAGTTACTGCGATGAAAAATGAAATCGAATCCGAACTCGAACCGACGGATTCGATTGTCGTCTTCGAATTCGACAACCCTCATGCGTTCGACCACACGACGTTCGGGGATGCGGACGAACCGGGGAGTCGGTTTACCTGAACTAAGGCACCACCTTGACAAGCGAACGGCGTCAACCGTGAGCGAGTCGGACGAGCGCGTTCGTCCGATCCAGTTCTCGAAACACAGATACATCATTTCCGTCGACCCCCCGGGGGGTACAGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGGGTTTCAGACGAACCNGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : CGAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGGGTGGTCACGATGGCGTTTCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGAGGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGCCCCGGCGTCGATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //