Array 1 29507-29299 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGD01000007.1 Giesbergeria anulus strain ATCC 35958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29506 28 100.0 32 ............................ ACCCTCGCCGCCAGCGTTGCCAACGCCACCGA 29446 28 100.0 32 ............................ TTCGATTGGCTTCAGTTCGCGTAAGTCGCGCA 29386 28 89.3 32 C..CT....................... GACAGCGCCACCGCAAACGCCAGCGCCCCCGT 29326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTACCTGCCGTGTAGGCAGCTTAGAAA # Left flank : TAGTCGCCCCGTATTAGTTGTATCACCCGGAGCATTTAACCAAGCCACAAAATTGCCTGTGGTTTTGCCAATTACCAATGGTGGCGATTTTGCTCGTCGGTTAGGATTTTTTGTTTCGTTAGAAGGAACAAAGACTACAGGAATTATTCGCTGCGATCAACCACGAGTGCTTGATTTAGCTGCGCGTAATGGAAGAAAGATTGAGTCGCTACCAGATTCCATAATGGACGAGGTACTGGCAAAAGTATCAACAATTTTTGAGTAGAAACCAAACCGCCTTCGGGCGGTTTTTCTTTTCGATTCCTCGCTTTTTTCGTGCATCTTTCGATTGATAACTAAAACCCCCGTGTGCTCTAATCTACCCATCTTCACCGCAACTGCGGAAATTTCATCAACCGGAGTCACCGCCGCTCAGGTAGCTGTGGCTCAAACAAAAGGGTAAAAACACGGAATAGCAAAAAATTACTTCAAAAACATAGGCTTAGACTCGAAAAAGTCTA # Right flank : GAGAAACCGCCTCCGGGCGGTTTTTTCTTTTCGATTCCTAACATTTTTAGTGAATCTTTCGATTCCAATTTCCCAGAAAAAAAAGGCATGATTAGAAATCTAATTCTGGAGGATAAAATCATGCGTTTTCTACGAAAACTCGCTGCAAGCGTTGCGCTCGTCGCGCAGCTTGTCACAGCGGGCAACGCTGTCGCTCAAGCGATGCCCGCTACCATTTTCAATCCAACTTCACAGCCGAATGGTGGTTGGTCATATGATCCCTCCACTCAAGGGATGCGTGATCTGCGTGAGATGAAGCCAATTGAAGGCTGCAACGCGCCGGGGGGCCTCACCCGTATTACCGACCGCGACGAAGGCGATTCAGCGCCATTTTGGTGCGGCCCACCCCCTCATTGCCTTGCGGAGGGCACGAACGGCGTCGATGCTTGCATCTTCGTCCCGTACTGCCGCCGCGAACCACGCGGCGACCCCAGCGGCATTTCGGGCGGCAACGGCTGCCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87218-85292 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGD01000001.1 Giesbergeria anulus strain ATCC 35958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87217 29 100.0 32 ............................. CAATGACAGATTTGCCTTGTTGCGGATTGAGC 87156 29 100.0 33 ............................. CTCCTGCTCAAGCTCATTTGCGAGCACCACAAC 87094 29 100.0 32 ............................. CTGGCCCCCTCGCTGGCGTGCTTGGGGGTGGT 87033 29 100.0 32 ............................. CGGTGGGCCTCCAGCGCCGGTACCGAAACCGG 86972 29 100.0 32 ............................. GCCACATTGCGGCCTGCACTGCCGGTGGCCGC 86911 29 100.0 32 ............................. TGCCCCGCGGCCGTTTCGGTGCTGTGTTCGGT 86850 29 100.0 32 ............................. CTGTGTCCTTCGCTTGCGTTCTTGGGGGTGGT 86789 29 100.0 32 ............................. TGGTGGGCCTCCTTTTCGGGGCTGTGTTCGGC 86728 29 100.0 33 ............................. CACAGCGCACGATAGTTGCCCCCGGCTGTTGGG 86666 29 100.0 32 ............................. GCGCTGTTATCTGATTACGGTTCAGTTACCAC 86605 29 100.0 32 ............................. CGCGTTGATTTTGATTGACATAAGAGAGCCTT 86544 29 100.0 33 ............................. CTCTGGCCGCGCCGGTCGGGGCATGGCGTGCCG 86482 29 100.0 32 ............................. TGGGGTGTGCCGCGTGGGATACCGTAATACTC 86421 29 100.0 32 ............................. CCTGCATCATTGAGCTGGGCAAGCTGCTGAAA 86360 29 100.0 33 ............................. CCCTCAGCTCGCGCTACCTGCAATGCTGCTTTG 86298 29 100.0 33 ............................. ACGAGCTTGGCGCTGCCACTGGCCGGGCGTAAA 86236 29 100.0 32 ............................. ATTCCACCGTCACCACCTTGGATGACGCCCCT 86175 29 100.0 32 ............................. CAGGGCAAAGAGGCCCGGTTGTCGCTGGGTAG 86114 29 100.0 32 ............................. CCACGACTTGATGCCGCTTTGTCCATAAGCTC 86053 29 100.0 32 ............................. TGGGTGCCCCGGAGCGGGCGCTGGCAATCGCA 85992 29 100.0 32 ............................. CCGCTTGCCGTGCAACTTGGGTGGCATACGGC 85931 29 100.0 32 ............................. GTGCCACGCCGTAACGGCTTCGCGCGCGGGCA 85870 29 100.0 32 ............................. TTGTCCCCGCTGCTACTGGTGCGCCCCGGTGA 85809 29 100.0 32 ............................. TATTAAAAAAAGGGAGGAAGGAGGGGGAGTCC 85748 29 100.0 32 ............................. AAAAAGGCGGTCATGAAAATCGTGGCCGACGC 85687 29 100.0 32 ............................. CTCCTGACTAGACCTGCCCGGCCAAACGGCTG 85626 29 100.0 32 ............................. CTGTGGGATCAGATTGCTGCGGCGCAGGTGCC 85565 29 100.0 32 ............................. CTGGCCCCGGTTTTGGTTTTAGGCTGTTGGGG 85504 29 100.0 32 ............................. CCCGGAAACTGTACCACCACTGCGCCCACCGC 85443 29 100.0 32 ............................. CAGTCTTGTTGGGCTTCCAGTAGAACCTGGGG 85382 29 100.0 33 ............................. GACGTGACGCCGATGGACGTGGTTGACTATGTG 85320 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : AAAGTTACTCGATCGCATCATTCCGGACATCGAAGATATTTTGGCGGCTGGAGAGATTTCGCCCCCATCCCCGGCGGCAGATGCCGTTGGCCCGGCTTTGCCTCATCCACAGGGGACAGGTGATGCTGGTCATCGTTCTTGAAAATGCACCACCGCGCCTGCGCGGACGTTTGGCCGTATGGCTACTAGAGGTTCGTGCCGGAGTGTACGTAGGCAATTATTCCCGACGTGTACGTGAGCAAATTTGGGCTCAAGTGGAAGAAGGCATAGAAGAGGGTAACGCCGTGCTGATCTGGCGCAGCACTGCCGAGGCAGGCTTCGAATTTTTAACACTTGGAAAGAACCGCCGCATCTCAGCAGATTTTGATGGGGTACAGTTGGTGCAATTTTTACCCACTATAGGTACCAACGCTCTTTAAAAATCTCGTTTGAAGATGTTCTTTTTTGGTAATTTTTTTAGTGTGTGATTTTCCAAATAAAATCAATAAGTTAGAATTGGT # Right flank : AGACAGAAAACCGGGAGAACGGCCAGTTCCGGTGGTTTCCGGTTGCAGGATTATTCCCACTCAATCGTGGCTGGTGGCTTGCTCGACACATCGTAGGTCACGCGGTTGATACCGCGCACCTCGTTGATGATGCGGCCAGAAACCTTCTTCAGCAGCGCATAGGGCAGTTCAGCCCAATCAGCCGTCATAAAGTCAGAAGTTTGCACCGCACGCAGTGCCACCACATAGTCGTAAGTGCGGCCATCGCCCATCACGCCCACGCTTTTTACCGGCAAAAATACCGTAAAGGCTTGGCTGGTCAGGTCATACCAGCTCTTGCCGGTGGCTTCATCCACAAAGTTGCCCAACTCTTCGATAAAGATGGCATCAGCGCGGCGCAGCAGATCAGCGTATTCTTTTTTGACTTCGCCCAAAATACGCACGCCCAAACCTGGGCCGGGGAAGGGATGGCGATACACCATGTTGCGCGGCAGGCCCAAGGCCACGCCCAGTTCACGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 301721-299468 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGD01000001.1 Giesbergeria anulus strain ATCC 35958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 301720 28 100.0 32 ............................ CTGCGCGCCACGTTTGACCAGTCGCAGCCCTT 301660 28 100.0 32 ............................ CAGATCAGACAAGTTGTTCTCAGTCTTGGCAG 301600 28 100.0 32 ............................ ATGCACGAAGATGAAGGCGCGCCGCAACCCAA 301540 28 100.0 32 ............................ TCCAAGGGGTCAACTGTAGCGGCGTCACGACC 301480 28 100.0 32 ............................ ATCAAGTTTGCCCGCACTGCAAATCTGATGCC 301420 28 100.0 32 ............................ AGTGGGGCAAATTCCTAGAACACGTCGTAACC 301360 28 100.0 33 ............................ AAGTCTTCGGCGGCCTTCTCAGCGGCGCTTTGC 301299 28 100.0 32 ............................ AGAACAGCGTCGCACCCGTTTGGCAACAGTGT 301239 28 100.0 32 ............................ GCAGCGAAAACAATCACGCGGCCAGAGCCGTC 301179 28 100.0 32 ............................ ATACATGATAGATACACTGGCGACAATGTATC 301119 28 100.0 32 ............................ GAAGTGATGGCCGCCCCTTCTACTGACACCGC 301059 28 100.0 33 ............................ AGCACAATCTGGCATTGCAGCAGGCCCCCAGTT 300998 28 100.0 32 ............................ TTGGGTGCAGTGCATCACCGGCCTACCTAAAA 300938 28 100.0 32 ............................ TGTGCGCCATAGAAACCCTGTTCCGGGCGTTG 300878 28 100.0 32 ............................ TATGCCCCGCTTTGCCATCGCGTCATAGGCCG 300818 28 100.0 32 ............................ GGCAGAAGCAAGATAAATAACACGAGGTGCAG 300758 28 100.0 32 ............................ TGTGCCAGTAGTGCCACCTGTAGTGCCTGTGC 300698 28 100.0 32 ............................ AAACTCGCGCTTTCGGGTTTAACTTCCGAAGC 300638 28 100.0 32 ............................ CATGTGTCTTTAGATGATCCTGCACTGTGGCC 300578 28 100.0 32 ............................ ACGCACAGAGAATAGAGCGAACCTCCTGCAAC 300518 28 100.0 32 ............................ TGCTGCTGGGCTGGCGCTTGGTTAGGCGCTGG 300458 28 100.0 32 ............................ GACGAACAATTAATAACTAAAGGATCGGCCAT 300398 28 100.0 32 ............................ TGAGCGACAAAAGCATCAAAAACACCACGACA 300338 28 100.0 32 ............................ CTGCCGGTGCTGAAGTTTCTGGAGCTTCGTGC 300278 28 100.0 32 ............................ TGTAGTGCCTGTGCCAGTGGTGCCGCCTGTGG 300218 28 100.0 33 ............................ GTAGTCGGCCCATGTTTGCATCATGACCACGCG 300157 28 100.0 32 ............................ TTGCAACAGATTGGTAGCCCGTGCAAATTTGA 300097 28 100.0 32 ............................ AAATCCCTTGCCATCGATCATGCCGCCAGCAA 300037 28 100.0 33 ............................ CATGCGTCACTTCGAGAGCGCGAACTTGACCAA 299976 28 100.0 32 ............................ ATGTAGCAGTCAAACTCTGATGGCGCGTAGTA 299916 28 100.0 32 ............................ ACGCCGCAACACCGCCAGACGCACACGGTATC 299856 28 100.0 33 ............................ TGTATTGCTGCTGGCACCACCGCTTGCAGTAAT 299795 28 100.0 32 ............................ ATACAGTCCGCAAATACGGCCAATGCAGCAGC 299735 28 100.0 32 ............................ CGCTTCGATGATGGTTTAGTTTATGTTGGAAA 299675 28 100.0 32 ............................ AGCAAATCCACGTCAGACAGCATGGGCACCAT 299615 28 100.0 32 ............................ TACCGCACTGGCACCACACCAGCGGTTCCCTC 299555 28 96.4 32 .................T.......... CATGTCAGGCGCTGGTCTTCGCTGATAGCTTT 299495 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.8 32 GTTTTCTGCCGCATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGCTTCGTTTTCTGCCGCATAGGCAGCTTAGAAATACCTGGTGCGCAAAGGGGTGAAGGCCCATGG # Right flank : AAATCAAGAGCCTCCGATGCCTAGGCATCGAGGTCGCAGCAGGTGCCAAGGTACCTCCAGCAGGCAAGGCCAAATCTATAATCTAAGGCTGTCCTCCAAGGGCCGGGCGCAGCTTGTCCGGCCCTCCTGAACACCCTCTTACACCCCCCCATCCATGAGCACACCCATTTTTACCGTTGCCGACATCCGCAAGACCTTTTTGGATTTCTTTGCTTCTAAGGGGCACACCGTGGTGGCGTCCAGCCCGTTGGTGCCGGGCAATGACCCGACGCTGATGTTCACCAACTCTGGCATGGTGCAGTTCAAAGACGTATTTTTGGGCAGCGACAAGCGCAGCTATGTGCGCGCCGCCTCGGTGCAAGCCTGTTTGCGTGCCGGTGGCAAACACAACGACTTAGAAAACGTCGGCTACACCGCACGCCACCATACCTTTTTTGAGATGCTGGGCAACTGGAGCTTTGGCGACTACTTCAAGCGCGAAAGCCTGAAGTGGGCTTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //