Array 1 3619947-3618776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJPES010000001.1 Klebsiella oxytoca isolate 328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3619946 28 100.0 32 ............................ TGTTGCACATCTGCGGCCATTGCCTGGCCTGG 3619886 28 100.0 32 ............................ TACAAAAAAGGGCAGCCATTATCCATCGCAAA 3619826 28 100.0 32 ............................ GCGCTCACGTCGATAGTATGCAGCGGTGAGTT 3619766 28 100.0 32 ............................ TCGATGGTGCGGGATATAACGACTGTACGGCA 3619706 28 100.0 32 ............................ AATGGACGGCAGCGAGGGCATAAAGATAACTC 3619646 28 100.0 32 ............................ GCTGTTCGCGGGGCGGGTAACCCGTAATGAGC 3619586 28 100.0 32 ............................ AACATGAGCTACGGTCGTTGACCACTCAAGAC 3619526 28 96.4 34 ..................T......... AGTACGCCAATGACCCTAACTCTCCCGTTGTCAG 3619464 28 100.0 32 ............................ GATAACGATTGCGGCGGCGGAACGGGAACGAT 3619404 28 100.0 32 ............................ GATTTCCCGTGGCGACGTCAATCAATCCTCAT 3619344 28 100.0 32 ............................ CACAGCGAGCACGCCGTTCATTAAATTGAAAT 3619284 28 100.0 32 ............................ GCCATCGGTCTGTAAATCAATGGCGTATTTAA 3619224 28 100.0 32 ............................ TGGCACGGACCATCCGGCTTACTGGCTGCTGC 3619164 28 100.0 32 ............................ TTTGAAGCTGGCCACCGCTACGCCAATACAGC 3619104 28 100.0 32 ............................ CGGCAACGCTGCTACTGCCGAACGAACGTCTT 3619044 28 100.0 32 ............................ TGCCAGCGCGAACGGAAGCATCAAGAGCATCA 3618984 28 100.0 33 ............................ GACAGCCTAGGAAATTACCGCGGGCGTTGGCGA 3618923 28 96.4 32 ........T................... TCCGATACCACGGCATACCGGCCGCAGCTTTC 3618863 28 89.3 32 A...T...................T... TGCTCTTCCTGGCGCTGTTGCTTCTGCTGTTT 3618803 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGTCTGATGCGCCGCTCGGTGAGAAAAGGCTTGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGATCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAGGTCAGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGTCAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3629666-3628375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJPES010000001.1 Klebsiella oxytoca isolate 328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3629665 28 100.0 32 ............................ ATCCATCGCAAGCATCGCCACGATAGTCGTCA 3629605 28 100.0 32 ............................ GTACTGTGATGATGCGCGTTAAGCGCGTGGGA 3629545 28 100.0 32 ............................ GGATGGGGAAGCGTCGGGTCTGTTATCAGTGC 3629485 28 100.0 33 ............................ ACGACAAAATATTCCGTGATGGGTCATTCCTGA 3629424 28 100.0 32 ............................ TGAGGCGACGTTAGAGGTGCGAGATGACTAAA 3629364 28 100.0 32 ............................ GGGAGGCTTATCACGGGTTTATTGTCCATATT 3629304 28 100.0 32 ............................ TGCAAATTCACCCTCGCCCAGCGCGATGAGAA 3629244 28 100.0 32 ............................ ACAAAGAAACTCTCCCGCTTTGCCCTCCACAC 3629184 28 100.0 32 ............................ TGACAGACCAGACCGGCATCGAGAAGCGCAGA 3629124 28 100.0 32 ............................ ACTAAGTTGCTGAAGAAGCACTGGCCGAAAAT 3629064 28 100.0 32 ............................ TCTTCGCTCATCCCCGCGAACTCAATCCATCC 3629004 28 100.0 32 ............................ TTAACCTCGAGCAGCAGGCCGTCGGACCAGTA 3628944 28 100.0 32 ............................ TGGACGCCCGGCGCCGGCCATCGTGAGGATTC 3628884 28 100.0 33 ............................ GCAACGCGAACACCAACGGGAACGCGGATCAGT 3628823 28 96.4 32 A........................... ATGCGCACGTAGAACAACGGACGGCTTGCATT 3628763 28 100.0 32 ............................ ATTGATGCCGGCTCCATTGCCGTTAGCACTGA 3628703 28 100.0 33 ............................ GATGGTTCATGCCGTTTTGCTGATGGCTATCGT 3628642 28 100.0 32 ............................ ATTGGATAACCACCGCTATCATTGCCGTGGTC 3628582 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 3628522 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 3628462 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 3628402 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTCGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGTGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAATCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTAGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGATGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3643433-3642925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJPES010000001.1 Klebsiella oxytoca isolate 328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3643432 28 100.0 32 ............................ TGAGTCGGCGACTTGAACGAGATTTTCAGATC 3643372 28 100.0 32 ............................ AAAGAGAGAACGGGAGTTTGTAGTCAAAGAAA 3643312 28 100.0 32 ............................ AACGGCCCGGGACGCCGCTGTGGAAGGCAATA 3643252 28 100.0 32 ............................ TTCCTCGAAAATTATATGAAGTGCGGTAATGC 3643192 28 100.0 32 ............................ AGTGAGTTTTTTTCCGCCACTGTTAACGAAAT 3643132 28 100.0 32 ............................ GAAACGCGAGAACCATTTCCAGCAGTTCAGTA 3643072 28 100.0 32 ............................ TGCAGGTTAACCAGAGTAACCCATTCGGTACA 3643012 28 100.0 32 ............................ GGATGACCGCTCGCATCGGCATTTTTGAATTG 3642952 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTTTGGGGGTTATTTTAAGATATTGATTTTTTAATATTTTTTATTGTTGCCTCAAAAAAAGGGTAAAAGGGCTTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGGTTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //