Array 1 95244-94239 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CXYK01000011.1 Escherichia coli isolate YS river water, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     95243	    29	  96.6	    32	............................A	ATACCCAGCGCAATTTCGAGCGCGAGAGAGTT	
     95182	    29	 100.0	    32	.............................	CCCCAGCGCGCTAAGAACTTCGTAAATATTGA	
     95121	    29	 100.0	    32	.............................	CGATAAACGCTCAATACCAGCCGGAATAATCG	
     95060	    29	 100.0	    32	.............................	GCGGAATCTGCTGCGCACAAGTTACACGGCGC	
     94999	    29	 100.0	    32	.............................	CCTTGATCGGATTCCAGAAACGAACCACTAAA	
     94938	    29	 100.0	    32	.............................	CCTTGATCGGATTCCAGAAACGAACCACTAAA	
     94877	    29	 100.0	    32	.............................	CCGCACCCCGCGCGGTTGGTCTGGATGACAGT	
     94816	    29	 100.0	    32	.............................	TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG	
     94755	    29	 100.0	    32	.............................	GTTAAATATTGTTCACCATCATGGATCAGGAA	
     94694	    29	 100.0	    32	.............................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
     94633	    29	 100.0	    32	.............................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
     94572	    29	  96.6	    32	.......T.....................	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC	
     94511	    29	  96.6	    32	............T................	GGATGACCTGTCGCTAAAACTCGCCGCGTACA	
     94450	    29	 100.0	    32	.............................	TCCGTTTGGTCCACCAAATGTTTGATGCTTCA	
     94389	    29	 100.0	    32	.............................	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA	
     94328	    29	  96.6	    32	.A...........................	GGCGCACTGGATGCGATGATGGATATCACTTA	
     94267	    28	  72.4	     0	.AA........C..T....T-.G.....C	|                               	C [94242]
==========	======	======	======	=============================	================================	==================
        17	    29	  97.6	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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