Array 1 40660-43892 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPPI01000026.1 Phormidesmis priestleyi ULC007 A3_25_len_64240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 40660 37 100.0 37 ..................................... CTGTCTTCCCTCGTGGGTTTATTTCTGTGTCGATCCC 40734 37 100.0 34 ..................................... GGATTACCTGCTCTCAATGAGAAGCAGAAGTCAG 40805 37 100.0 33 ..................................... AACCTGTTTCGGTGCGTCGATCTTTCCCCGGAA 40875 37 100.0 35 ..................................... ACCACATACTGACTGGGAAGCACATCCTCCTGAAG 40947 37 100.0 39 ..................................... AAGCAAAGCTTCACGGAAATTCGAGAGGGGAATTTTAAG 41023 37 100.0 35 ..................................... TGAACCAACAAAGCCAGGGAACAGAGAATCAAGTC 41095 37 100.0 35 ..................................... TGGAAATGTTTCGGCGATCGCTCTGGCTTTAAGTG 41167 37 100.0 36 ..................................... TCCTCGCATTCAGCGCAACACTCGCCCCACGATTAG 41240 37 100.0 35 ..................................... TCTAATATCATCGATAGGGGTTCGCACTTCAAAGC 41312 37 100.0 31 ..................................... GGTTAATCCGACGTGGTAGACGAGGACGCAG 41380 37 100.0 35 ..................................... CAGGATATTGTCATCGGGATTGACCCTGGCAAGAA 41452 37 100.0 40 ..................................... TCGCGAAACTAGACAAGATAAACTACCCCACCGCATAGAC 41529 37 100.0 38 ..................................... TTCAGACCTGGGAGGAACAAACAGCAAGCGGTTTTAAC 41604 37 100.0 34 ..................................... AGGGACAGGATGGATTCACGTCGGTTAATCCGAC 41675 37 100.0 36 ..................................... GAATGGAGGGAAGAGAGCGATCGAGAATCTGTGCGG 41748 37 100.0 37 ..................................... ATGAAGCTCGATCAGGCGATCGGTGGCTTCGGTGTGC 41822 37 100.0 35 ..................................... AAGAGTAGGCGCGATCGTAAAGCTGTTGTTATCTC 41894 37 100.0 39 ..................................... AGCCCCAACTCTTGACGAACGTTTTTGAAGGTGCGCCCG 41970 37 100.0 36 ..................................... CCCACTTGCGGAATGTGTACCTCATTCATCCCCGCC 42043 37 100.0 36 ..................................... AGCAACGCAGAGCGAAACACTTTCACCCCCCAGCAC 42116 37 100.0 36 ..................................... TTGACTCACTGGCTAAATACATCGAGGCTTATAAAC 42189 37 100.0 34 ..................................... ATACAAATCCTTCATAAGTACAGTTAATTTGGAA 42260 37 100.0 36 ..................................... AGTTCTTTTTGCAACCGATCGCGCGCCGCATTCCCT 42333 37 100.0 34 ..................................... GCGCAACACAAACTTACGCAACTGATTGTAGACC 42404 37 100.0 34 ..................................... TGTCTAAAAATTTGCAGAATGTTGCCGAAGTCAA 42475 37 100.0 34 ..................................... GAGACCATTTCAGCCTCAAAGCCGCGCAGACGGA 42546 37 100.0 35 ..................................... AAAGCATCTTTGTCTTTGCCGTCTTTGCCACCATC 42618 37 100.0 37 ..................................... CGGCAAACCTTTTGCACCACTCAGGTTTGCAGCACTC 42692 37 100.0 37 ..................................... TTAGGAATTTACAGACAAGCGGTGGCTTGTTCAGCGT 42766 37 100.0 34 ..................................... ACGACCTCAAGGGCGTTTACGAGTCGATCGAGCG 42837 37 100.0 35 ..................................... TTTCTCAAGACTCGATCGCTGCGAAAGTCTCTGAG 42909 37 100.0 35 ..................................... CTCTTGTTTGACTAAAAGATCCTGTTTCCTTTCAG 42981 37 100.0 36 ..................................... GGAAGAGTGAGAGTATTTTCGGAACTTTCTTGTAGC 43054 37 100.0 35 ..................................... AAGTGAAATGCCAAAGCGAAGACTGCTTTTAATGC 43126 37 100.0 34 ..................................... AGCTTAACTCTAGAGGTAGAAGAGGTGACTCTTG 43197 37 100.0 34 ..................................... GTGCAGATGCACGGTTAGAGGAGGAATCCAGCGA 43268 37 100.0 33 ..................................... TTTCTCTATGCTCCCTTTGCGATTGCCCAACTC 43338 37 100.0 40 ..................................... TGGCAGAGGCGACCGTGAATCGGCGGCTGGCTGCAATCAA 43415 37 100.0 36 ..................................... ACTAACATCTTGAACGCGGGCAACTTGGGCGATGGC 43488 37 100.0 34 ..................................... GAAATCGTGGGCGGCTTGCAGTCGAGCGGCGTGA 43559 37 100.0 40 ..................................... CAATATAAGGAGCGGTCGAAGAGTGGGTAAGGCATCGGGA 43636 37 100.0 35 ..................................... TTCCAACACAAAGATCGAGAATTGAGGTTGATTGG 43708 37 100.0 40 ..................................... AGTGATTGGTCGGCGGGGGTTACAATCTCGATTCTCCCAG 43785 37 100.0 34 ..................................... AAGCCATGCAATCTTTGGCTTATTTAGAATCCAC 43856 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 45 37 100.0 36 GTAGCGGCGGCTTTCGGGCTGCTGCTTGAATTGAAAC # Left flank : TGGTTATGATTGGGGTGCTGATATGGCGCTTTGAGGTGTGCCATCCAACTATTTAACAGGTGGCGATGGCTAAACGCGAGGCTAAGGGCATCGGAACTGGTCGTAGTGAGGGGTCGAAGCGTACTCAATTTGTGGGGAAAAAGGTTACGGTTCCAGTTACTTTTTCATGCACATTGCCGATCGATAAAGCTGCGATCGCAAAGAAGTTAAAAGGGCGGGGGAGCAGAGTAAGGCGGTTGATCTTAAAATATTGGGACGAATTTATCGACGAGAGCGCGGATGGGTAGGTGTTTGTGATGAGGTTTTAATTTAGTTAGCTGAATGCGTTACTAGGCAATGGTTTGAGCCTATTTTGACGATAGGTGTTCCGCGCTCCGATTAATTAACTGGAAAGTAATGGAGTTTAATTATGTAATCTTGTTTGAGGATGACAACTTGTTTCGGGGTTCGCACGATCGACCTCTGAAACTATTAGTAGGACGGGATTTCTAGCTCCCACT # Right flank : CGCTGCTTGAATTGAAATGAATTGAAATGAATTGGAACTTAAGCTGGATAGAAGTAAAAAGTAATTGCCAAAACAAGATAGGTTGCCAAGAGCAAGGCTCCTTCAAGCCAGTTTGATTTTCCGTCTGAGATCGTTGAGTTACTGAGTAACACAGCAACACCAACCGCGACCAACTCAAACGGGTTGAAGCTCAAATCCATCGGTTGACCCAAAACGAAACCTGCTAACACTAAAACCGGAGCCACAAACAGCGCAATTTGTAAACTCGACCCAACCGCAACTGCCATTGAAAGCTCCATCTTGTTTTTCATGGCGACGGTTACGGCAGTGGCGTGTTCTGCCGCGTTACCAATGATTGGCAGCAAAATCACTCCGGTAAACAGAGGGGTCAAACCTAACTGGGCGGTAGCTGCTTCCAAGGCACCCACGAGCAGTTCCGATTCGATCGCAACCAGCACTGTAATTCCCAGCAGCACCCCGACCCAAAACCACAGATGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGGCGGCTTTCGGGCTGCTGCTTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 1 204028-196874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPPI01000004.1 Phormidesmis priestleyi ULC007 A3_3_len_S_2_212364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================================================================================================================================================== ================== 204027 35 80.6 42 T.......G.CTT......T.............-.. AAAAATCTAAAGCTGTTCCCGAATTTCTTCGTTCACTATTCC GT,A [204020,204024] 203947 36 100.0 37 .................................... TACAAGAACGCGATCGTATCCAGGCAGATGCAGAGTT 203874 36 100.0 38 .................................... ATCTATCCCGGCAAATGCCTGCGACTTCGCTATCTCTC 203800 36 100.0 38 .................................... GTTCCAAATAATTTTGGTTTCGTTGTTGTAAAGCCCCG 203726 36 100.0 39 .................................... ATGAACGATCGCGTCTTAATCACAGACCATCCTCGCCAG 203651 36 100.0 48 .................................... TTAAAGCACAACGCTGGATTTGTCCAGCCCAGTTCGCGTGTTCCCTGG 203567 36 100.0 46 .................................... CGACACGATTAAAGTTGCCAAGGCAATGACCGACGGCATGCAAGCT 203485 36 100.0 39 .................................... TGCGAAGTCGAATGGGCTTACTGTTCAGTCGATTATCAA 203410 36 100.0 38 .................................... TCCAATCGCATCGACTTACGCCACATCGAAACCCATTC 203336 36 100.0 39 .................................... GTTTTAAGCTCAGTCGCCAGCCGTCGCGATAGCTTAGTC 203261 36 100.0 37 .................................... TTGAACTTGCCTGTCCGAGAGCAAGCTTTTTCGCCGG 203188 36 100.0 41 .................................... TTGCCGCTTTTGCGGGTTTTTCGCAATCACTTAGTCATTTA 203111 36 100.0 40 .................................... AAGAACTGCTTCAGGATAGTCGTCTGCAACTGAGACGAAA 203035 36 100.0 38 .................................... TTTTCATGGGATTAGACAAGGTTGCTGTGGTTTAAGAA 202961 36 100.0 38 .................................... TCAAGAATGTGACTGGGTTCAACTTCTGCAACTTATCG 202887 36 100.0 52 .................................... CTTACACCAACAACTTCGGGAAAGGTGGGTACGCAGGGATAGTTGCGTTCAC 202799 36 100.0 44 .................................... TGAAGGGTTTGTTGAGTTTGTAAACGGGCTACTTGCCCTCACAA 202719 36 100.0 40 .................................... ATGCAGTTCGACTATGCGACTAGGTATCGGTGGTACAAAG 202643 36 100.0 37 .................................... AAGTTTGAGCTAGTTCCGGCTGAAAAGACTCAAACTC 202570 36 100.0 37 .................................... TGACAAGGGTGACGCTGACACGGCTTACCTCATTGAC 202497 36 100.0 49 .................................... TGTATAACGCTTTATCTGCTACAGAGTAGCTAGATAGGCTGACTTTGTT 202412 36 100.0 41 .................................... CCTCATTTCGGTGCCGCTATTGGTGGCATTGACGATCGCGG 202335 36 100.0 43 .................................... ATGTCAAGCTCACTGCCAAGACAGAGGTTCTGAAGGCTGCTTA 202256 36 100.0 44 .................................... TTAGAAGCGCTTGCTTGCTGACCTGTATTGACTCGTAACTTATC 202176 36 100.0 38 .................................... TCGGATGATTTTCTTAATCAATTAATTGCATACAGCAA 202102 36 100.0 36 .................................... GCGTAAACCCGTCCCACGACCATTGTTCCGTCTCAA 202030 36 100.0 36 .................................... TATCAATCAGGGATACAACAAGCGCGTCGCATTTTT 201958 36 100.0 39 .................................... GATGGGCGATGTTGCGCCCGATGTATTCGATATTAAAAG 201883 36 100.0 42 .................................... AGGTCAATTTCAGAACGATATCATTGCCGTTCCTGTAACGAA 201805 36 100.0 36 .................................... AAACAATTTGATGTCGAGCCACAGCCCAGTATCAAG 201733 36 100.0 38 .................................... ATTGTGTCCTGTGGAGGCGCACCACTCGAAATTGTGAA 201659 36 100.0 52 .................................... CTCACTACGCTCCGCTATGGATGACCTTCCTGTTATCTACGCTTGTTGTTAG 201571 36 100.0 40 .................................... TTGAGAAGGGGTTTTGTTCGCCTCAAAACGGTGTAATTGA 201495 36 100.0 38 .................................... TCCAGTTTTTTTGGCTCCGACCGTTCCCGATGTGACGG 201421 36 100.0 40 .................................... CTCTCAATGGATCTGATGACGCTAACTACCTACTGTTGGC 201345 36 100.0 232 .................................... TTGAGTATCCAAGCCTCTCCTCTGCCCGATTGAGTTGGCTCAATGTGGAGTTTCCATTCAACGGGTGCGACCTCCATCCGATACATTGGAAAAAACCGATTACCTTTTGCTCCATAAGGGTTTTGAGTGCCTGTAAAATTGATCAATGAATAATCAAAAGGACTACTGTGAAATCGTTCAAAAACCTTATCAGCAGGAGGCTTGAGTCACTTTAGTATCAGGTAGAGGTCGC 201077 36 88.9 37 ACCC................................ AAGAGTTGCCGCCTATCTTCCCAAGCACATTGACGAT 201004 36 100.0 42 .................................... CCGATGACCAGTGCAGTGTACGACGGCATCCACAAACAGATG 200926 36 100.0 35 .................................... TGGAAGTTCATCGTGTAGCCGATTTGCGCTATCGT 200855 36 100.0 41 .................................... GCGGTTTATATGTCAGACGATCGTAGGCGATACCTCGATGG 200778 36 100.0 41 .................................... TTTTACCTCCGTCCGACCGGAACCAGCTACCGCCTCTATGC 200701 36 100.0 42 .................................... TTGTGGAGCTTAGGAAACGAGCAGGAGTTACTCAAAAGGCAG 200623 36 100.0 40 .................................... TTTCAACGAGCCAGTAGTTAGCGGGGGCAACGCTGCCAGA 200547 36 100.0 42 .................................... TTTGATGGCTTCAATGGCTAATCTTTGTGCTATCAATGTTTA 200469 36 100.0 41 .................................... TAATAATCGATTTGTTTTTAGGGATAAAATAAGGACAGAAA 200392 36 100.0 38 .................................... CAGTTCTCCCACGCAAGCTACTGAGAATATACTCACAA 200318 36 100.0 41 .................................... CAGATTACCGATTGGTACTCAATCGAGTTGTGGAGCAAAGC 200241 36 100.0 37 .................................... GAATATTACGAACTATGGTTTGGCGAGTATCCCTACG 200168 36 100.0 35 .................................... GGAATGATATCGTTCTCAAACTGTGACTTGCTGAA 200097 36 100.0 38 .................................... AATGAAGCGGCTATCGAAACAGATGACCCGTTCCTCTG 200023 36 100.0 39 .................................... TTCCGGCTGATGCCGTGACTGATGACGTGGTGGATACAT 199948 36 100.0 39 .................................... CAGTCAAACAGGAAAGCGATCGAAGACGCTTTAAGTACC 199873 36 100.0 39 .................................... AAGTTTGGCATCAAATTACCTTGCCGGGTGGCGTTTCAA 199798 36 100.0 39 .................................... CTGAGATGACACATACTGGATAACAGCACCGTTAAGGTC 199723 36 100.0 36 .................................... ATCGACAACCTGAAACGTGTAGCGAATATTAGGGCG 199651 36 100.0 39 .................................... CCGTTTCACTCAGCCCATCGCTGTTGGCATCGATCCCGG 199576 36 100.0 38 .................................... TGGTGATGCTTTTGCCTGTGAGCGTTCCCGCACTAGAA 199502 36 100.0 41 .................................... GAAGTGCGAAGATATCCTAACTGATATCCCTGTTGACCACT 199425 36 100.0 42 .................................... CCTCAGTCTGGGCCGTCTTTGCTGCAAGAAGCAGCAAGAATT 199347 36 100.0 40 .................................... ATGCTGTTGGTGCGCCTCGTGGTTGTGCAACAACGGGCGG 199271 36 100.0 41 .................................... CTGAGCTGCGGTCGCTGCTCCAACATCACTCGCAACCGCAC 199194 36 100.0 37 .................................... TTCCCACCCGGATCGCGATCGGCTTTTGGAGCCGCAA 199121 36 100.0 41 .................................... ACGAGCGTGTTTGACGTTAGCCCGTCTAGCGATCGCCCTGA 199044 36 100.0 38 .................................... GTGAACCGTGCCCAGTTGCTTGAATCAGCAAAGGCTTA 198970 36 100.0 39 .................................... CTGGGTTGATCCTTCTGGATATTTGTGGGTAATTGCCAA 198895 36 100.0 47 .................................... TCAGTGAAGCGGCTGCGCTAAAAGCCAGATAAAGCCTTGAGGTGCTG 198812 36 100.0 44 .................................... AGGAATTGAGGGGCATCTACACCCATCACAAAACCGCGATCGAG 198732 36 100.0 40 .................................... AATAATCGATGGTCGAGAGGGCAGGAAATCACGCTGACGA 198656 36 100.0 39 .................................... CGAAGAGACAGAAATCCAACCAACTAGGCAATGACGGGG 198581 36 100.0 38 .................................... TAATAGATTCTTCAATAGCGTCTGCACCTAATGTTTGA 198507 36 100.0 36 .................................... TTATTGCTGGAATTGAAGACAAACTAGAAAAAGTAT 198435 36 100.0 46 .................................... TTAATGGGATTAAGCTAGGACTGCTTCATCTACAGTGAAAGTAATA 198353 36 100.0 39 .................................... TTGTGGAATGTCCGTGCGAGCAATCTACCGGACAAGGGA 198278 36 100.0 38 .................................... AAGACTGACTTTTTAGTGTGGACTGACCCGCGATTCTA 198204 36 100.0 39 .................................... AAGCATGGACCAAAGCTTGCGAACAGGCACAGATTCACA 198129 36 100.0 37 .................................... ACTCGATCGGGTGCCAGCATGAGCATCAATCTAAGCA 198056 36 97.2 51 .................................A.. CAACGCTTTCAGAAGCACCATAACCACGTCATCAGCTATCGCATCATTCAG 197969 36 100.0 37 .................................... CTCTGCATTCGACTCAAAGCTATCTCCTGATCAGTAA 197896 36 100.0 43 .................................... AACAGCGATGATGCACCCGCAGACGGCGTTGTAAGCGGTCAAG 197817 36 100.0 33 .................................... TGGAAATCTGCCCCGTGTGGATGTTGCAACCAA 197748 36 100.0 46 .................................... TGTTTGTCTCGGTAAGGCAGAGCGTCTAAGACTTGAAGGGTCTCAT 197666 36 100.0 36 .................................... GGCAAAGTCGCCTCTTATAGAGGGATGCCGATCGTG 197594 36 100.0 40 .................................... TTGGTGAGATAACATTGAGTCAAGTTAATTATTTGGTTGC 197518 36 100.0 43 .................................... ACACCTCCCACTCGACTAATTACGATCGCCACTGAGAAACGAG 197439 36 100.0 38 .................................... TTTCACTACAAGACCGCTCAAAAGCTTTTACAGCAAGG 197365 36 100.0 44 .................................... CATTGAAACCTCAATCCCTTACAACCAACTTAGTTCAGTGGCGA 197285 36 100.0 39 .................................... ATGGCGATCGCCGCCTCGGATGGTGGAGAGGGCATTCAG 197210 36 100.0 37 .................................... TAACGTGAGCGCACAGCCCTGAAGGAGGGTTTCCCTC 197137 36 100.0 40 .................................... CTATGTTCAAATCGTAGGCAGAGTGAGCCGCCCTTCACCA 197061 36 100.0 41 .................................... ACGATCGCAGTTCACGCTCAGTTGGTATCGCTGATTTAGGG 196984 36 100.0 39 .................................... TTGGAATTCTTAGAGATCAAGCTGGTCAAGATGAGTCAG 196909 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================================================================================================================================================================================== ================== 92 36 99.6 42 GTTTCCATTCAACTGATTTCCCCAGCGAGTGGGGAC # Left flank : TCTTCGACCGAGGTTTCTTGGTCTAAATGGTCTACGGCATCGCAAGCGTTTATCAGATCTACGATCGCTTGCAAATCTGCTTCACCTGCATACGATCGAGTTCTGAATGATTGTTTGATCAGGGCTGACATGATGCACCTCGGCAACAATTGAGAGGATGCAGAGAGCTACATCAGCCAAGCATTGAATTTCGTACAATTTGAAGTATGTTTGTAGTATTTCCTGTTAAACCTAAGAGCGGCTGAGATTCAGAGTATGAGTCGTGAGGTCTGACATTCTCTAAGCCTAAGCAGGGAGTTTGTTAAAAAAGTTGCTGCCTTGAGAGGACAATAGTCTTTTAAGAGAGAGCCTTTAACTTGAGTTTGCCTATTCTTAGAAGTTATGAGGTTATTGCAGCAAGTATCACATTTGCTGAAAAATTGCTCGGAAGAGAAAACGTTACGAGCAATACTTTGGACAATTGTTTGCAATGTCTTTGGAGAAGCGATCGCTCGTATAAG # Right flank : TCTCTTACTTTAAAGCCAACTCCCGCAAAGAGTCCAGCTTTCAATTGCGAACCTCAGCCATAACTGGGACAAATCTAGCAAATCTTACCTCCTTAAAACCGCCAAAAGCCTTTCACTGTTTGAGATCGAAGCTCAAAACCAAAACATTAGACACTCACCCGATCGTCCTCAGCCTCGACCCCTAGACCACGATCGATCCCTGACGCTCCGTCAACGGCAACCCACCCCAAACCTCAACCTGCCTCACCGTATGCCCCGACATCGGATACATCCGCAAACTGTCTTCAGGCAACTTCACCACCTTCCCCAACCGCACCTTTAACTCCCGAAACTCAAGCGGAGACAGCACACACTCAAACACACTATATTGCACCCTCTGTCCATAAGCACACAACACATTTGCCACTTTAGTTCGGCGCTTTTGGCAAGAAATATCATACGCCACAAGATACAGCAACCTCTTACCCCCTACCGAATCTGATAAGACTCATACTCCGACG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTGATTTCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 24783-26212 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPPI01000009.1 Phormidesmis priestleyi ULC007 A3_8_len_201243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 24783 37 100.0 31 ..................................... AGGAGGCTGCAACGCAAGTTAGCCAAACAAC 24851 37 100.0 34 ..................................... ATGACACGGTTTGCCATCTTGAAGGCAAGACGAG 24922 37 100.0 34 ..................................... ATAAATGCGAAGCATTTTATCTGATTGGGAAGAG 24993 37 100.0 43 ..................................... TAAAGCCACATCCAAGCGAGTGCAATGAAAGTAGTTCGCAGAG 25073 37 100.0 37 ..................................... TTCTGAGCTAAACGCATCATCCACAATGATCCCGATC 25147 37 100.0 35 ..................................... CGAAATGCGCTGATGCACTCTTGCGATCTTCTGAT 25219 37 100.0 35 ..................................... AGAATAAATCAGAGCGATCGCTTCTTTTTTGCTCG 25291 37 100.0 33 ..................................... CACATGATTATTGAGTACACGCCCAAGATGGAG 25361 37 100.0 39 ..................................... TAAAGACGCGGGGATTCTTGAACGTGGTAGCGACAGTCC 25437 37 100.0 36 ..................................... CGAGCCAAGGAAAACAGCGAGAGGGGACTGGCGAGA 25510 37 100.0 36 ..................................... GAAAAACAGAGAGGACACGAATCAATTTTTTCTTGT 25583 37 100.0 35 ..................................... GTTAAAGTTCACCTTGATTTGGGTCGTTGTGGCTG 25655 37 100.0 39 ..................................... GGCGTAAGCGGTGACGATTTGAAAAAATCATTGACCTGC 25731 37 100.0 34 ..................................... GTCGGTAGATCGCTCTTGGCTTTTAGAGCTAGAG 25802 37 100.0 39 ..................................... AATTTCCTGCTGTAGTTTCTCAAGTTCAGTGCGAGTAGC 25878 37 100.0 34 ..................................... AGCGATAGCGATGTAGCCACCAGCGCCGCGATCG 25949 37 100.0 36 ..................................... TAGTCTTGAGTTTGCCAATTGGCTTGGCTATTCAAG 26022 37 100.0 37 ..................................... TTAAACGCGCGATCGGGCATGGATCTCACCGTCGAAG 26096 37 100.0 43 ..................................... AGGCAAGCCGCGATTCAAGGGAGTAGGGCGTTATCGCTCGTTT 26176 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 20 37 100.0 36 GTTCCAAAGAGCCTGAATCCCTTCCAGGGATTGAAAC # Left flank : ATTCCAGAAGATAAGCGCCGCACGAAGATTCACAAGGCTTTGAAGTCTTATGGACAGTGGATGCAGTTTAGTTTGTTTGAGTGCAACCTAACAGATGTTGAGTATGCGAAGCTAAGAGCTAGGTTGAGTAAGATGATTAAGCCTGAGCAAGATAGTGTGCGATTCTATTTTCTCTGCGCTTGTTGTCAGGCGAAGGTCGAGCGGATTGGTGGGGTGCAGGTGCGTGATGAGTCGATTTTCTTTGTTTGATGCGCGGAGGGGTAGGTGTTGAGGGCAGGTAGGCTATTTTTGGGGCTGAGGTGCCTGCTGTGTAAAGGTTAGATAGGTTTTGTGGTGGTGAGTCGATCCGCGCAGTCTCTCAAGTGCAGTGTAGATATAGGTTTCGATCAAAGGGTTGGTGTTAGTTTGTTCGCACGTCAGAGTTTACGATGGTATAATTTCAATGGTTCGCGCAACTGCACCTGGAAAACTAAATTTAATCAGGGTTACAGCCTCCCGCG # Right flank : CTGAGTGATCTTAATTAAAATCTCAGCATCGCTGTCGTTCCAAAGAGCCTGAATCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCGTTGGGGGAAGCTTCTCTTTAGCAAAAGCAGACGTTCCAAAGAGCCTGAATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAAGAGCCTGAATCCCTTCCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 27931-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPPI01000009.1 Phormidesmis priestleyi ULC007 A3_8_len_201243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 27931 37 100.0 36 ..................................... TCGATAAATCGCTCAACGCGATCGCGCATCCAAAGA 28004 37 100.0 35 ..................................... GCTCAAATCGCCGCCCAAGTCGTTGACGCGCGACT 28076 37 100.0 34 ..................................... TGAAACAGACAGACTCGTATTGCAGGCATCGCGC 28147 37 100.0 35 ..................................... GAGAGAGTCTTGCAGCCCTGAGATGTTGGCGATCG 28219 37 100.0 35 ..................................... ATCACGAACCCTCCCCCCAATTGATTCGAGAGTTC 28291 37 100.0 36 ..................................... GCGATGAGCGAGTACAACGCGAGGGGAACACTGGGT 28364 37 100.0 31 ..................................... ACTCTATTTTGGCTACACCACCAGCGCCAGC 28432 37 100.0 37 ..................................... AAATTATCAGCTAGTGGAATCAATTCTTTGCTCGAAA 28506 37 100.0 35 ..................................... TGAGAGTCGATAGAGGGGCGCGATCGTAGTCACGG 28578 37 100.0 36 ..................................... GCAGTCGGGTGCGGCAATCTCAACCATTTCAGGGCG 28651 37 100.0 43 ..................................... GGGAACAATAAGGGCGAACCCTTTAGCTGAGTCGCCCAATGAC 28731 37 100.0 36 ..................................... GATTAATTGGACGGCTCCAGGGGCGGCGATCGGCTC 28804 37 100.0 34 ..................................... CGGGGGCTTGGGGCATGATGGGGTGAAATACTAA 28875 37 100.0 34 ..................................... GCCATAGGTCTAAGCGATCGTGCCCCTTTTTCAG 28946 37 100.0 34 ..................................... TGAAGTCGAATCGCAGATTCAGCAAAAGCCTTAT 29017 37 100.0 35 ..................................... CAAACATCCGCACCGCAAACCGAGCCGGATAAGCG 29089 37 100.0 35 ..................................... GAATCACAACATCAGCAAACAGCTTGTGAGCCAAG 29161 37 100.0 34 ..................................... GCAACAATCCAAAACTGTCAGTTGTGGTGAATGT 29232 37 100.0 44 ..................................... GTACCGATGAGACAATCGGATCGCCTCATGACATCGTGAAAGCG 29313 37 100.0 35 ..................................... AGAAAAATCAAGGCGGCTCAGAAAGTGGAAGAGGG 29385 37 100.0 37 ..................................... TTAATCGTGGGAACTGCGGTGAGCGTAATCGCAGCAG 29459 37 100.0 41 ..................................... GAAGCTGTAAACCCTGTGTTGGCGAGGTTGGTTGCCGTAAC 29537 37 100.0 38 ..................................... GAGATTGTGCGAGATGGCAAACGCAGTGGCGCGATCGC 29612 37 100.0 41 ..................................... TCGACAAACTGAATGCCGTGCTGTTCACACAGTTGCTTGAT 29690 37 100.0 35 ..................................... TGATTTAGTCAGACGCAGTAGAAAGGTCTACTCAC 29762 37 100.0 38 ..................................... AGGACAACAAACCAGCTTACACACGCATCCGGGCCAAC 29837 37 100.0 34 ..................................... TACAAAGTGCCATAAAATTAGACAACCTGAAAAC 29908 37 100.0 37 ..................................... GTAGAGTGCGACGGTCAAGCTGAGTACGCCATTTTTG 29982 37 100.0 37 ..................................... GTTTTGAATCTGGCGCTGAGACGTGGTGCCGCCTCTG 30056 37 100.0 34 ..................................... GTCAAATTCTTACAGACTCGATCGGGGGCTTGAA 30127 37 100.0 40 ..................................... GGATAACTATGATATTTACGATCGACAACGCCTCACGTTC 30204 37 100.0 37 ..................................... CAGTTTTCGCAGGGTCGAGGGCAGTATCAAGATCTGA 30278 37 100.0 35 ..................................... TGAAACTGATGAATTAGCCCATACTTTGAGAGCGC 30350 37 100.0 45 ..................................... CTGGTATCAGCAGGGCGATCAAAGAGGACATTTTTGTTCCAAGTT 30432 37 100.0 36 ..................................... GTCGAAGATCTAGTTGGCAAAGACAAGATCACGATC 30505 37 100.0 36 ..................................... TTCGACAGATGGTCAGTGGTACGCCCCCGATCTTTG 30578 37 100.0 34 ..................................... CACACCGTCCGTAAGCTTGCCCCAGTGGGTTGAG 30649 37 100.0 42 ..................................... AGCACCAGATCGCAGCCTCCTCCCGGGTAGAAGCCAACAGTT 30728 37 100.0 37 ..................................... AACGCAGTTGCCCAAGGACTGATTGGTAATATCGGCG 30802 37 100.0 38 ..................................... AAGGGAGATGCCTAAACGATCTGCTTCACCTCTCGCAA 30877 37 100.0 35 ..................................... ATCCGCACTTCCATTGGCAGAGACACGCCTTTACC 30949 37 100.0 41 ..................................... TAGAAATATTGATTGCCCCATTCAAATCAGCATCGCCGTGA 31027 37 100.0 36 ..................................... GCGTGTTCCCATCTAGCGATCGTCAGGTGGCACCGC 31100 37 100.0 38 ..................................... CTCACATTCCGCCCGACCCTGCTTGGGGAATCTACCCC 31175 37 100.0 34 ..................................... ACGCCAGAACGGGAGACACCGAGTTAGTCATCCT 31246 37 100.0 35 ..................................... AAAGGCTTCATTCGTTGATAGCGATTTTCTGCCTA 31318 37 100.0 34 ..................................... AGGGTACGATCGCGCGACCTCCGATTTTTATCAA 31389 37 100.0 40 ..................................... AAGAGACTGAAGTTGAGATCGTTCGAGCGATAGAGACGCT 31466 37 100.0 35 ..................................... CTTAAGGAATTCACAATGGATACTCAAACTCTCAC 31538 37 100.0 40 ..................................... CAATAACGCCACCTACAGCTAAAAATACCTGGGTTATTTG 31615 37 100.0 36 ..................................... GAGCATTAATCCGACCTGCGCCGATTCCATCCGCTC 31688 37 100.0 35 ..................................... TTGGATCGCCCTGTGTAACTCGATGGTTTCTTGTA 31760 37 100.0 40 ..................................... GCCCTGAAGGATTTAGCCCCATCAATGGCAAAGGCGGGGC 31837 37 100.0 35 ..................................... TAAACTAGCTTAAGATATTCTAGGTAACATATCTA 31909 37 100.0 35 ..................................... CCTGAGATGGGTGAAGCTCCTGTAGAAGACCCCAG 31981 37 100.0 37 ..................................... AATGAATTGGATATGCTCCGAAAACATATCCATAGCA 32055 37 100.0 36 ..................................... CCTGATGTAACTATTGGGATGTATGTAGATAAAGAG 32128 37 100.0 34 ..................................... TCAGGCAACCACTGGGCAGCGCCCGTGCAGGCAG 32199 37 100.0 35 ..................................... GTCATCTGGGTTATCCATTAGCATCTGTGATCATC 32271 37 100.0 40 ..................................... ACTAAGTCAGGTAACAACAACACCACTGCAATTGCTACAA 32348 37 100.0 36 ..................................... TTCTTGTGTGTTCGGTTTAGTGTGCCCAATTCTCTG 32421 37 100.0 35 ..................................... ACTTTAAGGTTTTGCACCCAACAACCCCCTTAACT 32493 37 100.0 44 ..................................... GTCTCCATCCAGACTTGATGAATACAAAACCATACCGAACGCTA 32574 37 100.0 36 ..................................... GTCTCCATCCAGAACAACCGTAGCCTTACTTTCAAA 32647 37 100.0 36 ..................................... CAGCATTCGCAACAGTGCGGAGATTTCGACCTCTTT 32720 37 100.0 35 ..................................... ATAGTAATACATGTAAGCAGCAAGCTGGTCAAAGT 32792 37 100.0 35 ..................................... AAACTAGTTTTAGAAACCAAGAGTAATGATCTGGC 32864 37 100.0 33 ..................................... ATGCACTTGAAGGATACGAATGAGGTCAGTGAA 32934 37 100.0 34 ..................................... AATAGCTTCTACTACGATGGATGGACTAAAGTAA 33005 37 100.0 39 ..................................... CCCTTCTGTTGAAGGCAAGACTATTGCAGAGTTGCCCAG 33081 37 100.0 33 ..................................... ACCTAACTTTCCCTGCAACACTTGAGTTATCTG 33151 37 100.0 41 ..................................... AGGGATAGAGATAGCAGGTCACCGATACAACGCTGACAGTG 33229 37 100.0 35 ..................................... TCAAGTTCAGTTATTTTTCAAGTTTCAGAATCGTT 33301 37 100.0 35 ..................................... ATCGAGATATTCGATAAAATTGAAAATGAACAAGA 33373 37 100.0 33 ..................................... ATTGATGGGGATTGGTACGGGAACGTACGAGGT 33443 37 100.0 34 ..................................... AGATTCAGTCGGTGCTTCTGAAGGTTTAGGTGAT 33514 37 100.0 35 ..................................... TTACTCACGGGGGTCTGGGGGGGGGGGACTGGAAG 33586 37 100.0 34 ..................................... TAGCCTATCGAGAGATTGAAAACAATTGAAAATC 33657 37 100.0 34 ..................................... TTCCAATCATCGAGCCAATCGCCGGGAGGAACAA 33728 37 100.0 41 ..................................... GTAAAAGTCTGGCGTGTAGACCATGCAACATAGATCCGCTA 33806 37 100.0 37 ..................................... TGAGACTGATGCAATGGCGTGGCATGAACTCACGAAA 33880 37 100.0 33 ..................................... ACCAGTAACCGAGAAGGGCACCAACTTACAGTG 33950 37 100.0 34 ..................................... TGGGAATAAAGTAGCAACGAGCGGGACATTGCGT 34021 37 100.0 35 ..................................... TAAAGACATTGGGACGCTGGTGGCAAGACTTCCTA 34093 37 100.0 35 ..................................... CACTGAGAGGAAACTAGGGAATGTCATTATCCAAG 34165 37 100.0 35 ..................................... GGGAGTCAATGTGAAACGAGCGCAACAGATACTTG 34237 37 100.0 35 ..................................... CTCTCAGGGTTCGCTAACTCTCCACTCACTGCCGT 34309 37 100.0 36 ..................................... AATGGAGAGGTTGTAGCCAGTACTTTAGAATGGAAT 34382 37 100.0 35 ..................................... TAGACCCAACACTGAACGGGACTATTGTTCACATG 34454 37 100.0 35 ..................................... TGAAGACCCTTGCACGTAAAGCCATCTACTGAGAA 34526 37 100.0 34 ..................................... CGTAAGCTCTGGGCTATGCTTCGCTCCTTGGTTG 34597 37 100.0 34 ..................................... GCCGGGAGGAACAAGGGAAATCGCATCATTAAAA 34668 37 100.0 34 ..................................... CACTCAGTACGACTTCCCAATACGGAGTGTTTGG 34739 37 100.0 34 ..................................... CTACATTCCAGTTGAGTTTGCTACTGAGGAGAAT 34810 37 100.0 35 ..................................... TCAGAAGACTAGACAACTCATCGATGAAGCAGCAA 34882 37 100.0 34 ..................................... AGAACCCACTTGCTCCCATTGACATCACACTCCC 34953 37 100.0 36 ..................................... GCAACTCCCACAACAGTAGGGTGGTCAACCATGTCT 35026 37 100.0 35 ..................................... CTACAAACTCCCTTGACTGCCAAAAAGCGCCTCAA 35098 37 100.0 35 ..................................... TTGTAGTTATTGCGAGGGAATGAAGGGGAGATAGT 35170 37 100.0 35 ..................................... ATGGGTAGCGAGAGTAGCGATAGCGCCACTCTAGC 35242 37 100.0 35 ..................................... AATATTTTGGCGGTTGAGTGGCTCTGGGAGGATGG 35314 37 100.0 35 ..................................... AGCAGTATTGGCAGGATTGCCCAAGCCAGTATCAG 35386 37 100.0 34 ..................................... TAATTACTATCCCACTAATTCATCATCATCAGTA 35457 37 100.0 34 ..................................... GATGCGAGAACGACTGGAGGACGAAGAAAGAGCG 35528 37 100.0 34 ..................................... AAAACTGCTCACCCGCTAACCCTATCGAGATCAC 35599 37 100.0 34 ..................................... AGGACGAGAAACACTGACAGAATGCCCCATTAAA 35670 37 100.0 35 ..................................... GCAGATGGATTGTCGAGGTGTGAGAGTTGCAATAT 35742 37 100.0 34 ..................................... CTCGTTGGCCAAGGCTGGGTGAACAATGCTAAAC 35813 37 100.0 36 ..................................... GTCGTTCACCTCCTGGATGAACAACCCCATTCTCAG 35886 37 100.0 37 ..................................... TTCATTGTTCCTCCATCCCCTACGGCTTGGGGCATTT 35960 37 100.0 35 ..................................... GACGAAGGGACTTATGGCGGCGAGGTAACTGTTTC 36032 37 100.0 35 ..................................... TCGTCAGGCGGTAATGCAGATTAGATTGCGCCGAA 36104 37 100.0 34 ..................................... CAAATAATTCTCGCACACAATAAACTTTAGGGGC 36175 37 100.0 36 ..................................... TCAATACAAAAACCCTAATTAAAGCAAAATCCTAAT 36248 37 100.0 34 ..................................... AGACGAATTTCTCGCTCGTATCCAGCCGTAAGGC 36319 37 100.0 36 ..................................... GATATTTTCTTGCGAGGTATCTAATTCACCTCGTAC 36392 37 100.0 38 ..................................... AATTCTAAATCTGCAATTTCTTTCTCTGTTAGGGTAAA 36467 37 100.0 34 ..................................... TTTAGGCTGCGAACGTTGAGCGTGACAATCTCTG 36538 37 100.0 35 ..................................... CTAGCCGACGAGCAAGCCGCGCTAACGAATCGACC 36610 37 100.0 38 ..................................... CTGACTGCTCTGAAGAGTTGGGACGCGATGTTAATTAC 36685 37 100.0 33 ..................................... GCAGCCAAATACCTCAGATCTAAAAATCAGGAA 36755 37 100.0 41 ..................................... AGAGATAAATGAAGAGGTAGAGGCGATCGCGAGATGGATTC 36833 37 100.0 35 ..................................... CAATTTTATGGCGGCATTCACCCTGATTTTGAAAC 36905 37 100.0 36 ..................................... GAAAACAGTATCCTGATTCTGGACGTAAACGTCTGA 36978 37 100.0 36 ..................................... TCGATATAGGCTTTGCAGCAGCTATCGGAGGAGCGC 37051 37 100.0 35 ..................................... CTTTAACGCTTTCCTGCTGCTGGTGCGAAGCGAAG 37123 37 100.0 37 ..................................... GCTGAACTTGGCGGCTCTCCAGGGGGCAAGGAATCAG 37197 37 100.0 38 ..................................... GAAATTCCGGGCATGGGTACACCCGACGCGGATCAGTT 37272 37 100.0 42 ..................................... GGGAAGGATGCCCCGATATCGCTTGCAGCAAGAGGCGTGAAG 37351 37 100.0 35 ..................................... GCCATGAATAATCAGCCGCATTTTGCTCTAATAGG 37423 37 100.0 41 ..................................... GAGTACGAGTCCGTAGCTGCCATCGCGGTAGGTCGGAATGC 37501 37 100.0 35 ..................................... TAAGGGACGATCGCGACTTCTGGATAGACGAGTTT 37573 37 100.0 34 ..................................... AGATACAGAATCCGCTTATAAGAAAGGCAGTCAT 37644 37 100.0 37 ..................................... TGCGGAGTCGATTAGCTCATTTAATGGCGGCAACTCT 37718 37 100.0 35 ..................................... ATGACACCGAGCGATCTCTTAACATTCAAGTGCCC 37790 37 100.0 37 ..................................... CTAGATCCTGAAGTGCAAAGAGCGATCGAGGGCAAGC 37864 37 100.0 36 ..................................... GACTCGGACTCAGAATTTTGAGAGGCTTTAGAGGAG 37937 37 100.0 35 ..................................... GGAAGTTCTGAAGCTAGTCGCACAGGGATTAACAG 38009 37 100.0 36 ..................................... AAGACTTTCTCACGAGATGCTGACAACATCTCGGCA 38082 37 100.0 35 ..................................... GGATCGTCGAACGAGAGATGAGGAGGGCGATCGCG 38154 37 100.0 32 ..................................... GGTTCTAGGCGTTGCCCTGACCACCGCATGGG 38223 37 100.0 34 ..................................... GAAATTATGGGACTCGCTGCCGTGCCGCCCAGGG 38294 37 100.0 36 ..................................... ATCTAGCAAAGTTTGCCAGTAGAGACGATCGCTAAA 38367 37 100.0 37 ..................................... AGAAATGAAACTAAAGGCTCTACCTATCACGTTGATT 38441 37 100.0 37 ..................................... CAATCTGAGCTAGAGAAGATGTCGAAAGCTGCGAGTG 38515 37 100.0 35 ..................................... ACGATCTCCGGGGGTAGAACTGCCCATGAGCTTAA 38587 37 100.0 36 ..................................... GCAGTGCAAGCTGGATCGATCGGAGACTTCCTTGAA 38660 37 100.0 37 ..................................... AACCCCATTGCGCGAAGAAAAGGCATTCGATGTTTGG 38734 37 100.0 36 ..................................... TGCCATTATTACAACCACATTTCACCTCAATTTTAG 38807 37 100.0 37 ..................................... CAAGCGCTGGCAACGGTGCAGCAGCTAGGACATCCCG 38881 37 100.0 36 ..................................... TGGGTGTGACTTCGAGAAAGCAACGATCGAGCTTGA 38954 37 100.0 36 ..................................... GAACTCATCGATAAAGCACAATCGAAGGGCCGCAAG 39027 37 100.0 35 ..................................... CCAAGTAGTAGCCAAATTTGTGCAACTCAAGCCGT 39099 37 100.0 34 ..................................... GCATTATTCAGTCGGCGCTGATCATCGTGGCTCA 39170 37 100.0 42 ..................................... GGTTTTGGGCATCAGAACTGATACCCTCGATCGCGATTGCTC 39249 37 100.0 35 ..................................... CGAGTCGCTGCTCTGCCTGTACACGGTAGATATTC 39321 37 97.3 35 ...................T................. AGAGTAGATGCTTGAGTACTTGGGATTAGACATTA 39393 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 158 37 100.0 36 GTTCCAAAGAGCCTGAATCCCTTCCAGGGATTGAAAC # Left flank : TTCCAGGGATTGAAACCGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAATCCCTTCCAGGGATTGAAACTAACACATAGTCATTCGGATCAGACGGCTCATCAAGC # Right flank : CTCGTCTAATCGCAGTGCCCACAGTCAGGAATCACCGCTCCTTTAGGACGGTGAGGATGTCAAGAAACCTCTATCAGCGGAACGAGGAAAAGCTTCAGAAGCTGTGGCACTGTGAGTAATAGGTGCTGTGTCACGAATTCTTTTTATAAAGTATGTATACCGAAGAAAAAAAAGTTACTCAACTCGCTACTCTAGATAGCTTTGCTTACTCTGCGATCGAGAAACATTTTAAGAAATCAATCAAACACGAGTCAGACGTTCTCGACGACAAAGATCCCGAATTGCTGCATCAGATGCGAGTGGGGTTGCGTCGTCTGCGAACTGCCGTAGACGTTTTTGACTTTGCGGTAGACTTGCCGAAGCCAATTAGCGATCGTACCATCAGCAAAATTGCTCACTCACTGGGTGCGGTCAGAGATCTCGACGTGCTAACCGCAGAACTCAACAGTCAGCAACAAAGCAGTTTGCCGATCGCAGAGCAAAATCGACTAGAAACGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAAAGAGCCTGAATCCCTTCCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //