Array 1 436573-437578 **** Predicted by CRISPRDetect 2.4 *** >NC_013421.1 Pectobacterium parmentieri WPP163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 436573 29 100.0 33 ............................. CCAACATGCTGGGTTGTTCACACGCGACACGGC 436635 29 100.0 32 ............................. CATTTGATTCTATGAATCGCATCTCAGGGAAC 436696 29 100.0 32 ............................. CTCTGATGTTGCGTGTGCTGGGATTTGATGTG 436757 29 100.0 32 ............................. CAAATGGCTAAGCGCGGTTATCCGTGGGCTGA 436818 29 100.0 32 ............................. CAATGGCAGATTTCGCCAGGCGCTTGAGGAAA 436879 29 100.0 32 ............................. TCTTTACACTCAATTCGCAATATTTCGTGACC 436940 28 96.6 32 ........-.................... GTTCTTAGATTACAAAAAGCTCCGGTAGAGCA 437000 29 100.0 32 ............................. ATGGCACCGTTTTAAGCGGTCGCACATCTGCA 437061 29 100.0 32 ............................. CTGTGGCTGAGCTATTTCGTGCGCGTCGTTGA 437122 29 100.0 32 ............................. AGAAAAATACTCAATCGTGGTCGTGCCGAAAC 437183 29 100.0 32 ............................. CCGGTTGAGCGCGAGGCGATGAACGCCATTTT 437244 29 100.0 32 ............................. TGCTCGCAACGTTTGCGTATCAGGACTACGCA 437305 29 100.0 32 ............................. AGTGAAACCATCGGCCAACGAATACGTAGACG 437366 29 100.0 32 ............................. TTGCGGTATCCAGAAACCGCGTTACTACTCGT 437427 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGG 437489 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 437550 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439447-439841 **** Predicted by CRISPRDetect 2.4 *** >NC_013421.1 Pectobacterium parmentieri WPP163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 439447 29 100.0 32 ............................. CATTTTTAATGGGTAGGACCTATCATCTGGCT 439508 29 100.0 32 ............................. CATGGATAAGAGCGACGTAGGAACGCAATTTG 439569 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 439630 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 439691 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 439752 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 439813 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGCATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4009625-4010673 **** Predicted by CRISPRDetect 2.4 *** >NC_013421.1 Pectobacterium parmentieri WPP163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4009625 28 100.0 32 ............................ AAACGTTAATGATTTCTTTGGCGAAGATGTTC 4009685 28 100.0 32 ............................ GACGCTCGTCACACAAATGTTAGAGCGAGCCG 4009745 28 100.0 32 ............................ AGAAATGGCCCAAAACTCGCATTGACATAACA 4009805 28 100.0 32 ............................ GTTGAATTAATTCCTAGCCGTGGCAACCTAAC 4009865 28 100.0 32 ............................ ACGGATGGCGGCATTTTAAAAGCAAAGTATTG 4009925 28 100.0 32 ............................ GACCGGGTTGGTGATGCCCTTGGCCTTGCAGT 4009985 28 100.0 32 ............................ AGCCCATGCAATACGCATCAGCCTGCGCATAC 4010045 28 100.0 32 ............................ TGCCAGCGGACCAGATGAGGGGGACCGCCAGT 4010105 28 100.0 32 ............................ ATCGTAAAATCCTCCGTTCGCCTGCTCGAATA 4010165 28 100.0 32 ............................ AGATGGAATTGCTGTTTCATGCAGCACCTCGC 4010225 28 100.0 32 ............................ CGAGCCATTCGCGATGCTCTGGACGCGAGAGA 4010285 28 100.0 32 ............................ AGCAGAACGCGCCACCAGCGATGATTCCAGCC 4010345 28 100.0 32 ............................ ATTGGTTGGGCTATCGTGATGTTCGCTTGCAC 4010405 28 100.0 32 ............................ CTTCATGACGGCGAACGTAGCGCAGTACGCGC 4010465 28 100.0 32 ............................ TCAGAAAGTCGGTATCGCGTCGTTTTGTCCGT 4010525 28 100.0 32 ............................ GCCGTCCAACTCTCTGCAACTGCTGGACGAAA 4010585 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 4010645 28 82.1 0 A...G.......GC..........A... | G [4010670] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCCCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4027943-4029473 **** Predicted by CRISPRDetect 2.4 *** >NC_013421.1 Pectobacterium parmentieri WPP163, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4027943 28 100.0 33 ............................ CATGACGGCATGTGCCAGATCAACGGCATCTAA 4028004 28 100.0 32 ............................ AGCACAATCAGGCGCGGATCATTGCGGAACGG 4028064 28 100.0 32 ............................ AGAAGAAGGTGTTTTTGATTACGGCATCCTGT 4028124 28 100.0 32 ............................ CGACGGTGCGGTAATCGAGTATGAACCCGCTA 4028184 28 100.0 33 ............................ CTGCTCGGCGATAATCTGGCTGGGGTTTTTTGG 4028245 28 100.0 32 ............................ CGCGCCATACGTTGCACCCGTCCGATAAATTC 4028305 28 100.0 32 ............................ GCGCTGTGCCTTGCGTATCAGAACCTTGCTCA 4028365 28 100.0 32 ............................ TGACGAATGCCAGGGCTTGTATTAGGTATTAT 4028425 28 100.0 32 ............................ TAGTTGAGCGTTGAATTCATCACGTATCGCTC 4028485 28 100.0 33 ............................ AGCCTGTCTGTTGGCCCCGGCATGCTGCGTGAA 4028546 28 100.0 32 ............................ TCCTCAGGCTGAAGTGGCATAAATGAAATGCT 4028606 28 100.0 32 ............................ TTGAGCCAACCGACCTGAAGTAGTGCGTCAGC 4028666 28 100.0 32 ............................ AAAGTTAGCTTTGGGATGAGTGCAGATGATGG 4028726 28 100.0 32 ............................ TGCTTAGAGCTCCACAGCACGTTGCCGCCGAC 4028786 28 100.0 32 ............................ AGAGAATGCACGGAACTTATAGGATACACGGC 4028846 28 100.0 32 ............................ TAAAAGCGGGGATTTCAACGACCTGCTGACAG 4028906 28 100.0 32 ............................ AGCGCATCTTCGAGCGTCGGAACCGGATCAAT 4028966 28 100.0 32 ............................ AGCCGGAATCTCAACAAGCGCTGTGCCGGTGA 4029026 28 100.0 32 ............................ AGATGAAAATGGCGTGGAGGGGCATTCGCTGG 4029086 28 100.0 32 ............................ ATCGGTGCCACCTGGTACTTTGCGTTTGAAGC 4029146 28 100.0 32 ............................ TTTTCGAGTATCAGAAGCATCTACGCGTCAAT 4029206 28 100.0 32 ............................ ACGAAAGCACAGAAGAAGCGATCGAGCGTCGT 4029266 28 100.0 32 ............................ CAATCGCTGCGCCGGTTTCATCTACACCAAAA 4029326 28 96.4 32 .............C.............. CGAAATGCAAGGGGAATGGGTACCGAAAAATG 4029386 28 96.4 32 .............C.............. GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 4029446 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCACGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTATTGATGTCAGCGAAATTAATCGCAGGCTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTATCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //