Array 1 12385-13443 **** Predicted by CRISPRDetect 2.4 *** >NZ_UISI01000029.1 Klebsiella pneumoniae strain EuSCAPE_GR077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12385 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 12446 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 12507 29 96.6 32 ..........................T.. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 12568 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [12622] 12622 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 12683 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 12744 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 12805 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 12865 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 12926 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 12987 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [12992] 13049 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [13054] 13112 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 13173 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 13234 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 13294 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 13355 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 13416 28 82.8 0 ..........A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 93.1 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGTGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 258756-260184 **** Predicted by CRISPRDetect 2.4 *** >NZ_UISI01000005.1 Klebsiella pneumoniae strain EuSCAPE_GR077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 258756 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 258817 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 258878 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 258939 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 259000 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 259061 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 259122 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 259183 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 259244 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 259305 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 259366 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 259427 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 259488 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 259549 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 259610 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 259671 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 259732 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 259793 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 259854 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 259915 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 259976 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 260037 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 260098 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 260156 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //