Array 1 10334-9940 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLP01000003.1 Peptoniphilus vaginalis strain KhD- 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10333 28 100.0 33 ............................ TCGGATGATATAACGGGAAATCTGTTTCTTGAA 10272 28 100.0 33 ............................ TCCCTATGATACTGATGCATTAAATATTTATGA 10211 28 100.0 33 ............................ TAATTTACAATTACTAGATTAGATAAAAACAAA 10150 28 100.0 33 ............................ CTCACTACCAAACACTATATATTCATAGTCTTC 10089 28 100.0 33 ............................ TCACGCTTGCAAGTTGTTTTTTATGAAGTTTTA 10028 28 100.0 33 ............................ TAATAGTCGATACCAGGTTTCTGCCACCAGAGG 9967 28 89.3 0 ........................T.GT | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTAGTCCCCGCGTAGGCGGGGGTGATCC # Left flank : GATCCAACCAAGGATAACATAATAGAAATAGGGGCAATAAAAGTTGGAGAAAAAACAGAAAACTTTCAGAGGTTTGTAAAGATAGATAGAAAACTATCTGAAGAAATAGAGACTTTAACAAAAATTAATAATAAAATTCTAGAAGAAGAAGGAATTTCAGTAGACTTGGCATTAAAAGAACTTATTGAATTTATTGGTGACACAATAATATTAGGATATAACATAGGATTTGATATAAAGTTTTTAAATAAATCTTTAGAAAAAGAAGGAATGCCTAAAATAAACAACAAAGTATATGACATTATGCAATTTATAAAAAGAGATAATCTATTCTTAAAAAATTATAAACTAGAAACAGTTTTAAAATCCTATGGGATTGAAGAAAAAGTACCTCATAGAGCACTTGAAGATGCAATATTAGAAGAGAAATTAATTCACAAAGTGAAAAAATTGTGGGATATATTATAATAAGAATGGTGCAATTGTAGGATCTTTTAAGT # Right flank : TTTATAGAAAAATTAGACGGGAAGGATAAATAATAATTTAAGAAGACGATATGAATTTTATGGGTGATAGGGAACAAATTAATACCTGGAGAATATATGTATTTAGTAATGGAAGTGTTAAGATAAAGTTAAACCTTAGTTCTTTGCAGTTTGCTAATTAAAGATTTTTATTTTTGTAAAAAGTTTATTTAGTTTATTTTTTAGTAAGAGAGCGTGATAATTAATATGAACATAATTGATAACTTTTTTAATGAAATAGAGAAGGTGTTATTTGTAGAAGCCTCCAAGAATGATTGGGAATTATTTAATGATTTGGAAGACTATTTCATTGATAACAACGAGACGATTTTCAAAAAAAAAAAAAAAAAAGAAAGGATATCTGACTTGGGTTATGAAATGCAAGATGTGATTGCAGAAATGAGCTACATGGATGACTTTACTGAATGCAGAAGGAAGATAAATAAACTTTATAATGAAATGAAAAAAGAACCCCAGGCATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 430067-434390 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLP01000004.1 Peptoniphilus vaginalis strain KhD- 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================================================================================================================================================================================================================== ================== 430067 33 97.0 35 ................................C TATAATCACATTTCCAAAAATTACATCATTTAGAA 430135 33 97.0 34 ................................C CCCCGGTTGATAGGTTGACACTTTCGGCGGCTCC 430202 33 100.0 34 ................................. GCGATAGAAATGAAGCTAGAAATTATGGAAGAGA 430269 33 100.0 35 ................................. ATTCTATCTACATTACCACGAGCTATGCCTGCCAA 430337 33 97.0 34 ................................T TCTTGGACACTGTTTCGGACCGCAGATTGTCGGA 430404 33 97.0 35 ................................C TAAAAGTGCATGGTAAGGGGGCAAAAGAAAGAATT 430472 33 97.0 34 ................................T ATTGTCCTCTGACTTGGCTCACTATATAGGCTTA 430539 33 97.0 33 ................................G TCTAAAAAATTTCTTTGTAAAAATTCTAGGTAT 430605 33 97.0 40 ................................T TAAGAGAATCAACAATAGATAACGAAGAACAATCATAAAA 430678 33 100.0 33 ................................. TTTATTTTGGTTATTCTGTTGTTTTAAGATGGG 430744 33 97.0 35 ................................G ATTTTCTCAATCTTATATACATATCCCTAGCACAA 430812 33 97.0 33 ................................C TTATAATAATCAACTACAATTTTAGGCAAAGTA 430878 33 100.0 34 ................................. ATTAACCTACTCTAACAAGACCACCACCAAAATT 430945 33 100.0 35 ................................. TTAAATAAAAAGAAACTCATTACGTGGACTTCTGC 431013 33 97.0 34 ................................T ATTTTTAAGTTATTTATTATTTACAAGAAAGAAA 431080 33 100.0 34 ................................. ACCTTTGCAACTCCTGCAAAATCGCCATAGATTA 431147 33 97.0 34 ................................C TCAAATGACTTATCTTTACGCTCCATATAGTTAT 431214 33 100.0 35 ................................. TGATGCTCTTGATAATCTATTATTGACTGTTGATA 431282 33 97.0 34 ................................T CCATTTCTTAGTGCTGCGATTTGGTCTCTTGCCT 431349 33 97.0 33 ................................T ACTCCTACCATTTCATACACCTGTACCTGCTGC 431415 33 97.0 35 ................................C GTCGTCGATTGAAGTCACGTAGTCAAAATCTACAG 431483 33 97.0 35 ................................C CTGTGCAAAGTTAGGATCATCTTGCGTTAATATAA 431551 33 100.0 33 ................................. TGGTCAAAGTGGGAAGTGCGACAAGTTATATAT 431617 33 100.0 34 ................................. AGTAATGCCTTAAAAGTTCCAATCCTTAACTCGA 431684 33 100.0 36 ................................. TTTCCTCTAGGTTGTACCTGTCCTTGTCGTCAGAAA 431753 33 97.0 34 ................................T AATTTAAAAGTATCTCAAAGGAAACGGAAAGGGG 431820 33 100.0 33 ................................. ATTGCAGAATTAGACAAAAAATCATTTTTAGAT 431886 33 97.0 36 ................................G TATTCTGGTACTCCTGGTAGTGGTAAATCCTTGCAT 431955 33 97.0 34 ................................G CTATGTTGCTCACGATATACTTACTTGTTAAGTT 432022 33 100.0 34 ................................. TCAAATGGCGTGTATGGATCCATCAACCTCACAC 432089 33 97.0 34 ................................T AATCAAATAAAATTTTAGTGAGGTTTTTATGTTA 432156 33 97.0 33 ................................T TAAAAGATAATGATGTAGGTTTACTTTTATCAG 432222 33 97.0 33 ................................T TAAAAGATAATGATGTAGGTTTACTTTTATCAG 432288 33 100.0 33 ................................. TGATTTGCCGCCTGAATTATATGCTTGATCCCC 432354 33 100.0 34 ................................. GAAAAATCAGGATTAGCAGGAAAATGGCTAAAAA 432421 33 97.0 34 ................................G TCATTATAACCAATCCAGGATATTACAAAATTAT 432488 33 100.0 34 ................................. GCATTCTAGTGATAGCAGTAGCCGCAATGTATTT 432555 33 100.0 35 ................................. CGGATTTATCGATGGTATGGAATTTGAAATTACAT 432623 33 97.0 34 ................................G TCAATCTTTTCGTTTTGTCCTTGTAGGGATAATT 432690 33 100.0 37 ................................. ACATACATAGTGTCCGTGATAAAAAGTAACCTCTCAT 432760 33 97.0 34 ................................C CAGATTTTAAACAAGTAAGGGAAATGGCAATTAA 432827 33 97.0 34 ................................G TGATTGATAATTGTACTTTCAATCAAATTTTCTT 432894 33 97.0 36 ................................T ATAAAAATGTTAAAAATAGAGAGACGGCAGCTGCAG 432963 33 97.0 35 ................................T ATTGATTTCGCACCCTGCTTCTGCTCCTGCTACCC 433031 33 100.0 33 ................................. TCAAGGTTTTCTAGTGGGTTTGCTGTTGCTTCT 433097 33 97.0 33 ................................T CTTGAGAAGATAACTTTTCAAAATGACGACCTA 433163 33 100.0 33 ................................. TTTAGAAAAATGAGAAGATTAAAAAATGGAATG 433229 33 100.0 35 ................................. ACTCTTGCATCAGTTTATAGGTCAAATTTATTGTA 433297 33 100.0 35 ................................. CCATCTACAGATGGTATTGAAAATGATATCAAGAG 433365 33 100.0 34 ................................. TAAGAAGATACCAGATTTTTTGAATTAAAACTTC 433432 33 100.0 34 ................................. AGGCAATACCAGGACAATTTGGAACTGTCAAAAC 433499 33 97.0 34 ................................G CTCTCCATACTGCACAACACTTACTGCTGCATTT 433566 33 97.0 33 ................................C TGTTCCTTCAGCGGCAAAAACAGAAGAGTTAAG 433632 33 100.0 33 ................................. AGTTGCTCCACATAGTTATATAGGTTTATGTAA 433698 33 100.0 33 ................................. CATATTAGTTGCCCTTTTCTAACACTATCATCA 433764 33 97.0 33 ................................C TGTTCCTTCAGCGGCAAAAACAGAAGAGTTAAG 433830 33 100.0 33 ................................. AGTTGCTCCACATAGTTATATAGGTTTATGTAA 433896 33 100.0 33 ................................. CATATTAGTTGCCCTTTTCTAACACTATCATCA 433962 33 97.0 34 ................................G TCTAATGTCTATGTTTAATATTAATTATTTATTT 434029 33 97.0 34 ................................G AGTACGCTAAAGGTGACACAGTAGAGCAATTAAT 434096 33 97.0 229 ................................T TTAATATAATAAGGTGATTTACTATATGAAAAATAATTTTTTAAATTTATTTACTTTAATAACTTATCTTATAGGTTTTGTTTTAATTATATTGTCTAATATATATAAAAACATATATTTAGCGAAAGTAGCTATGGGGTTTTATGTTTTATTTGGTTTGATTTTAATTTTTGCCTTTTGGTTAAAAAAATAATATATTCTTCAAATGAATAAATATAAAAACGATTCA 434358 33 87.9 0 .......T......T.............T...C | ========== ====== ====== ====== ================================= ===================================================================================================================================================================================================================================== ================== 62 33 98.2 37 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : CACAAGCCCTCTTATTAAATTCTTATCTTAGAGGAGACATAGAGGCCTATCCACCCTTTATGATAGGAGGCTAAAATGCAAGTATTAATTACTTACGATGTAGAAACAGTAACGCCAGCTGGCAAAAAAAGATTAAGACAGGTAGCAAAAGTCTGTCTTGATTATGGACAAAGAGTACAGAACTCAGTCTTTGAACTAAATATTTATCCAGCCGACTTGGTAGAAATAAAAAACAAATTAGAAAAAATAATTGATTCCAAAAAAGATTCCATAAGAATTTATAATTTAGGGAAAAATTGGGAGAGAAGAGTTGAAAGCCTGGGAAGAGACGATACTTATAACCCAGAAAAAGATTTATTGATCTTGTAGGACTTGTGAGATTTGGACCTGGACATAAAAAGCCTAGACCTAACTCATAAAAAACAAGGAAAAAAGAGACAAAACTCTTTAAAAAATGATTAGCTGTATTTTTTAGCAGGAGATAATGGCTAAAAAATACG # Right flank : CATTAAGAAAGGTAAGGTTAGCAAAGGTTGGAAAAAAATTTAAAAGAAAAACTGTTATTTTTAAAAGAAAATTGTAACCCTTATGAAATCAATGAGTATTTTGCTTTCGAGTTTGCAGATGATTATGACGTATTTGCTCAAGATAAAAGCAACATTGAAGTTTTAGATTATCTCAATGATGAATTTATTGTCATCGATGTCGATTATAGTCACACAGATGAATTTGATAGCAAGGTAAGAGGGACAATTGATGAAGCTATTAATATGTTAAGTTGTATGCCTTCCGAGTTGGTGGGTTGAAAATTTTTACTCGCCCAGCGAGTGAAAAATTTAGTAGCAATATTCATAAGTGTGTGGATGGAAATTGAAGTATAAGGTTATTTTTATGAAAGTAAAGTTTATTGGTGAGTCTGATCCTGTTTATATGATTAATGGAAAGGCCTATGATGTTATTAGCATTGAAAAGGGTTGGTACAGGATTGTTGATGAAGAGGGGGAGG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //